Ggra4934.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4934.t1
Unique NameGgra4934.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length579
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:223482..225218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog111780.Sta7437_2143
Preferred namecrtH
PFAMsAmino_oxidase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01960
KEGG koko:K09835
KEGG ReactionR07512
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Evalue6.67e-237
EggNOG OGsCOG1233@1|root,COG1233@2|Bacteria,1G0CP@1117|Cyanobacteria,3VJ3F@52604|Pleurocapsales
EC5.2.1.13
DescriptionPFAM FAD dependent oxidoreductase
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4934Ggra4934Gracilaria gracilis GNS1m malegenetig00000157_pilon 223482..225218 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4934.t1.stop1Ggra4934.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 223482..223484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4934.t1.CDS1Ggra4934.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 223482..225218 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4934.t1.exon1Ggra4934.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 223482..225218 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4934.t1.start1Ggra4934.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 225216..225218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4934.t1Ggra4934.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 223482..225218 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4934.t1 ID=Ggra4934.t1|Name=Ggra4934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp
MSSPAFVSPLPVRPSLNQKASPSKRPKYQLRATAQPVRSPTLPKADTKHV
DVVVIGSGIGALTAAADLASKGASVCVLEKYLIPGGSSGYFARDGYMFDA
GASMIFGFGERGTTNLLTRALETVGRRLETIPDPVQVRYHLPGINIRVHR
EYEVFLDELIKRFPSEEKGIRKFYGECWNVFNSLNAMPLRSLEEPNYLLR
VFFAHPLACLSLLRYIARNAGEIARKHIADKDLLRFIDMECYSWSVVPAD
LTPMINAGMVFSDRHYGGINYPVGGVGRISQELVQGIEGKPGCSVQYKSR
VAKVLFSEGRACGVKLADGSEINAKAVISNATRWDTFGGGGLVDEEHVPA
AEYRFRERYLKSPSFCSMHIAVREADLEVSMHEKDGMDCHHIMLDDWNEL
ETARDGKGTLFVSIPTVLDKSLAPEGMHIFHVFTPSWLDEWDGLSNEDYN
VKKQMMLEVVTERLERTLFPGLKGAIEFAEVGSPKTHRRFLGRIDGSYGP
VAKKKLRGLLSMPFNRTELDGLYCVGDSTFPGQGLNATAFSGFACGHRVA
ADLGLIGKLPEPLDSFLTDLLSKQRLKL*
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spliced messenger RNA

>Ggra4934.t1 ID=Ggra4934.t1|Name=Ggra4934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000157_pilon:223482..225218- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCACCTGCCTTTGTATCACCTTTACCAGTTCGTCCTTCGCTGAA
TCAGAAAGCCTCGCCTTCAAAGCGTCCGAAATACCAATTGCGGGCAACGG
CTCAGCCTGTTCGTTCCCCTACACTTCCCAAAGCGGACACAAAGCATGTA
GACGTCGTCGTCATAGGCTCTGGGATTGGAGCTCTCACTGCCGCTGCAGA
CCTTGCTTCCAAAGGAGCATCAGTTTGTGTTCTTGAGAAATACCTGATTC
CAGGAGGCTCATCGGGTTACTTCGCTCGCGATGGATACATGTTCGATGCA
GGGGCTTCAATGATTTTCGGTTTTGGGGAACGAGGCACAACGAACCTGTT
AACTCGCGCACTCGAAACTGTTGGACGCAGACTGGAGACAATTCCAGACC
CTGTGCAGGTGAGGTATCATTTACCGGGCATCAACATTCGCGTTCATCGC
GAGTATGAGGTCTTTCTCGATGAGCTTATCAAACGTTTTCCTTCTGAAGA
GAAGGGGATCAGGAAATTTTACGGAGAATGTTGGAACGTGTTCAACTCAC
TGAATGCGATGCCATTGCGTTCATTGGAGGAGCCGAACTACCTACTACGC
GTGTTCTTCGCACATCCGCTGGCCTGTTTGTCTCTTCTACGATACATCGC
CAGGAACGCTGGAGAAATAGCGAGAAAACACATCGCGGATAAAGATCTCT
TGCGCTTTATTGACATGGAATGCTATTCCTGGAGCGTAGTACCAGCAGAT
TTAACGCCAATGATTAACGCTGGCATGGTTTTTTCAGATCGACATTACGG
CGGCATAAACTATCCTGTGGGTGGCGTTGGTAGAATTTCACAAGAGCTTG
TCCAAGGCATTGAAGGTAAACCGGGTTGCAGTGTGCAATACAAATCTCGA
GTGGCAAAAGTTCTGTTTTCGGAAGGGCGTGCATGTGGGGTGAAACTTGC
CGATGGGAGCGAGATCAATGCAAAAGCCGTGATAAGCAACGCAACGAGAT
GGGATACGTTCGGTGGTGGGGGTTTGGTCGACGAGGAACACGTTCCAGCA
GCAGAGTATCGTTTTCGGGAGCGATATTTAAAAAGTCCAAGCTTCTGCTC
CATGCACATCGCAGTGAGAGAGGCTGACCTCGAAGTCAGTATGCACGAAA
AGGATGGAATGGATTGCCATCATATCATGCTTGATGACTGGAATGAATTG
GAGACTGCTCGCGATGGAAAAGGCACCCTGTTTGTTTCGATTCCAACCGT
GCTTGACAAGTCGCTCGCACCAGAAGGCATGCACATATTTCACGTGTTTA
CTCCAAGTTGGCTGGACGAGTGGGACGGGCTTTCCAACGAAGACTACAAC
GTAAAGAAACAAATGATGCTAGAAGTTGTAACTGAAAGGTTGGAGCGAAC
ACTATTCCCTGGGTTGAAGGGAGCCATAGAGTTTGCGGAAGTTGGTTCGC
CAAAAACCCATCGTCGCTTCTTAGGAAGAATCGACGGGTCGTACGGGCCG
GTCGCCAAAAAGAAGCTGCGAGGTCTGCTTAGTATGCCGTTCAATCGGAC
AGAATTGGACGGATTGTATTGTGTGGGTGACTCCACTTTCCCGGGTCAGG
GTTTGAACGCCACTGCTTTTTCTGGATTTGCCTGTGGGCATCGAGTTGCA
GCTGATTTAGGACTAATAGGCAAACTCCCGGAACCTTTGGATTCATTCTT
GACAGACTTGCTTTCGAAACAAAGATTGAAGTTATAA
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protein sequence of Ggra4934.t1

>Ggra4934.t1 ID=Ggra4934.t1|Name=Ggra4934.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=579bp
MSSPAFVSPLPVRPSLNQKASPSKRPKYQLRATAQPVRSPTLPKADTKHV
DVVVIGSGIGALTAAADLASKGASVCVLEKYLIPGGSSGYFARDGYMFDA
GASMIFGFGERGTTNLLTRALETVGRRLETIPDPVQVRYHLPGINIRVHR
EYEVFLDELIKRFPSEEKGIRKFYGECWNVFNSLNAMPLRSLEEPNYLLR
VFFAHPLACLSLLRYIARNAGEIARKHIADKDLLRFIDMECYSWSVVPAD
LTPMINAGMVFSDRHYGGINYPVGGVGRISQELVQGIEGKPGCSVQYKSR
VAKVLFSEGRACGVKLADGSEINAKAVISNATRWDTFGGGGLVDEEHVPA
AEYRFRERYLKSPSFCSMHIAVREADLEVSMHEKDGMDCHHIMLDDWNEL
ETARDGKGTLFVSIPTVLDKSLAPEGMHIFHVFTPSWLDEWDGLSNEDYN
VKKQMMLEVVTERLERTLFPGLKGAIEFAEVGSPKTHRRFLGRIDGSYGP
VAKKKLRGLLSMPFNRTELDGLYCVGDSTFPGQGLNATAFSGFACGHRVA
ADLGLIGKLPEPLDSFLTDLLSKQRLKL*
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mRNA from alignment at tig00000157_pilon:223482..225218-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4934.t1 ID=Ggra4934.t1|Name=Ggra4934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000157_pilon:223482..225218- (Gracilaria gracilis GNS1m male)
ATGAGTTCACCTGCCTTTGTATCACCTTTACCAGTTCGTCCTTCGCTGAA
TCAGAAAGCCTCGCCTTCAAAGCGTCCGAAATACCAATTGCGGGCAACGG
CTCAGCCTGTTCGTTCCCCTACACTTCCCAAAGCGGACACAAAGCATGTA
GACGTCGTCGTCATAGGCTCTGGGATTGGAGCTCTCACTGCCGCTGCAGA
CCTTGCTTCCAAAGGAGCATCAGTTTGTGTTCTTGAGAAATACCTGATTC
CAGGAGGCTCATCGGGTTACTTCGCTCGCGATGGATACATGTTCGATGCA
GGGGCTTCAATGATTTTCGGTTTTGGGGAACGAGGCACAACGAACCTGTT
AACTCGCGCACTCGAAACTGTTGGACGCAGACTGGAGACAATTCCAGACC
CTGTGCAGGTGAGGTATCATTTACCGGGCATCAACATTCGCGTTCATCGC
GAGTATGAGGTCTTTCTCGATGAGCTTATCAAACGTTTTCCTTCTGAAGA
GAAGGGGATCAGGAAATTTTACGGAGAATGTTGGAACGTGTTCAACTCAC
TGAATGCGATGCCATTGCGTTCATTGGAGGAGCCGAACTACCTACTACGC
GTGTTCTTCGCACATCCGCTGGCCTGTTTGTCTCTTCTACGATACATCGC
CAGGAACGCTGGAGAAATAGCGAGAAAACACATCGCGGATAAAGATCTCT
TGCGCTTTATTGACATGGAATGCTATTCCTGGAGCGTAGTACCAGCAGAT
TTAACGCCAATGATTAACGCTGGCATGGTTTTTTCAGATCGACATTACGG
CGGCATAAACTATCCTGTGGGTGGCGTTGGTAGAATTTCACAAGAGCTTG
TCCAAGGCATTGAAGGTAAACCGGGTTGCAGTGTGCAATACAAATCTCGA
GTGGCAAAAGTTCTGTTTTCGGAAGGGCGTGCATGTGGGGTGAAACTTGC
CGATGGGAGCGAGATCAATGCAAAAGCCGTGATAAGCAACGCAACGAGAT
GGGATACGTTCGGTGGTGGGGGTTTGGTCGACGAGGAACACGTTCCAGCA
GCAGAGTATCGTTTTCGGGAGCGATATTTAAAAAGTCCAAGCTTCTGCTC
CATGCACATCGCAGTGAGAGAGGCTGACCTCGAAGTCAGTATGCACGAAA
AGGATGGAATGGATTGCCATCATATCATGCTTGATGACTGGAATGAATTG
GAGACTGCTCGCGATGGAAAAGGCACCCTGTTTGTTTCGATTCCAACCGT
GCTTGACAAGTCGCTCGCACCAGAAGGCATGCACATATTTCACGTGTTTA
CTCCAAGTTGGCTGGACGAGTGGGACGGGCTTTCCAACGAAGACTACAAC
GTAAAGAAACAAATGATGCTAGAAGTTGTAACTGAAAGGTTGGAGCGAAC
ACTATTCCCTGGGTTGAAGGGAGCCATAGAGTTTGCGGAAGTTGGTTCGC
CAAAAACCCATCGTCGCTTCTTAGGAAGAATCGACGGGTCGTACGGGCCG
GTCGCCAAAAAGAAGCTGCGAGGTCTGCTTAGTATGCCGTTCAATCGGAC
AGAATTGGACGGATTGTATTGTGTGGGTGACTCCACTTTCCCGGGTCAGG
GTTTGAACGCCACTGCTTTTTCTGGATTTGCCTGTGGGCATCGAGTTGCA
GCTGATTTAGGACTAATAGGCAAACTCCCGGAACCTTTGGATTCATTCTT
GACAGACTTGCTTTCGAAACAAAGATTGAAGTTATAA
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Coding sequence (CDS) from alignment at tig00000157_pilon:223482..225218-

>Ggra4934.t1 ID=Ggra4934.t1|Name=Ggra4934.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00000157_pilon:223482..225218- (Gracilaria gracilis GNS1m male)
ATGAGTTCACCTGCCTTTGTATCACCTTTACCAGTTCGTCCTTCGCTGAA
TCAGAAAGCCTCGCCTTCAAAGCGTCCGAAATACCAATTGCGGGCAACGG
CTCAGCCTGTTCGTTCCCCTACACTTCCCAAAGCGGACACAAAGCATGTA
GACGTCGTCGTCATAGGCTCTGGGATTGGAGCTCTCACTGCCGCTGCAGA
CCTTGCTTCCAAAGGAGCATCAGTTTGTGTTCTTGAGAAATACCTGATTC
CAGGAGGCTCATCGGGTTACTTCGCTCGCGATGGATACATGTTCGATGCA
GGGGCTTCAATGATTTTCGGTTTTGGGGAACGAGGCACAACGAACCTGTT
AACTCGCGCACTCGAAACTGTTGGACGCAGACTGGAGACAATTCCAGACC
CTGTGCAGGTGAGGTATCATTTACCGGGCATCAACATTCGCGTTCATCGC
GAGTATGAGGTCTTTCTCGATGAGCTTATCAAACGTTTTCCTTCTGAAGA
GAAGGGGATCAGGAAATTTTACGGAGAATGTTGGAACGTGTTCAACTCAC
TGAATGCGATGCCATTGCGTTCATTGGAGGAGCCGAACTACCTACTACGC
GTGTTCTTCGCACATCCGCTGGCCTGTTTGTCTCTTCTACGATACATCGC
CAGGAACGCTGGAGAAATAGCGAGAAAACACATCGCGGATAAAGATCTCT
TGCGCTTTATTGACATGGAATGCTATTCCTGGAGCGTAGTACCAGCAGAT
TTAACGCCAATGATTAACGCTGGCATGGTTTTTTCAGATCGACATTACGG
CGGCATAAACTATCCTGTGGGTGGCGTTGGTAGAATTTCACAAGAGCTTG
TCCAAGGCATTGAAGGTAAACCGGGTTGCAGTGTGCAATACAAATCTCGA
GTGGCAAAAGTTCTGTTTTCGGAAGGGCGTGCATGTGGGGTGAAACTTGC
CGATGGGAGCGAGATCAATGCAAAAGCCGTGATAAGCAACGCAACGAGAT
GGGATACGTTCGGTGGTGGGGGTTTGGTCGACGAGGAACACGTTCCAGCA
GCAGAGTATCGTTTTCGGGAGCGATATTTAAAAAGTCCAAGCTTCTGCTC
CATGCACATCGCAGTGAGAGAGGCTGACCTCGAAGTCAGTATGCACGAAA
AGGATGGAATGGATTGCCATCATATCATGCTTGATGACTGGAATGAATTG
GAGACTGCTCGCGATGGAAAAGGCACCCTGTTTGTTTCGATTCCAACCGT
GCTTGACAAGTCGCTCGCACCAGAAGGCATGCACATATTTCACGTGTTTA
CTCCAAGTTGGCTGGACGAGTGGGACGGGCTTTCCAACGAAGACTACAAC
GTAAAGAAACAAATGATGCTAGAAGTTGTAACTGAAAGGTTGGAGCGAAC
ACTATTCCCTGGGTTGAAGGGAGCCATAGAGTTTGCGGAAGTTGGTTCGC
CAAAAACCCATCGTCGCTTCTTAGGAAGAATCGACGGGTCGTACGGGCCG
GTCGCCAAAAAGAAGCTGCGAGGTCTGCTTAGTATGCCGTTCAATCGGAC
AGAATTGGACGGATTGTATTGTGTGGGTGACTCCACTTTCCCGGGTCAGG
GTTTGAACGCCACTGCTTTTTCTGGATTTGCCTGTGGGCATCGAGTTGCA
GCTGATTTAGGACTAATAGGCAAACTCCCGGAACCTTTGGATTCATTCTT
GACAGACTTGCTTTCGAAACAAAGATTGAAGTTATAA
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