Ggra4929.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4929.t1
Unique NameGgra4929.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:207947..209161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4929Ggra4929Gracilaria gracilis GNS1m malegenetig00000157_pilon 207947..209161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4929.t1.start1Ggra4929.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 207947..207949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4929.t1.CDS1Ggra4929.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 207947..209161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4929.t1.exon1Ggra4929.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 207947..209161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4929.t1.stop1Ggra4929.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 209159..209161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4929.t1Ggra4929.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 207947..209161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4929.t1 ID=Ggra4929.t1|Name=Ggra4929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp
MLRPLVFLLVFTVLMLFQNASLPQKGHTQHLSSFNFDYVATVFPSYRTPR
CVLLRCGPSRQPQTTIITSCDTLQATVVKTKTNLTARHCVSDFLLTHWDT
LEGTYKHGVSYATHSILLATDARDLPFSMNSISLSLNEQRKLISTQWLSF
RPSNQTRNLLRAWLNNAKNHPTNENLALTQIRGCAGRDIACHSRYGVIGA
ICHKPLRCGNGNSFFMGAARAVIILAFVQASILTAKQTRIPMEFIAILLL
CVSLFSMKWTNAACTIARSLFCRCKTSLVGAAEVDGTLFTGDLRGWYEGR
AYFLRDGVYEARVTGGMQPLFPPLFGLYMFFKRVLGDWFLFSGAMAVLVS
AGVSRLLLFVSSWRKGDDHVKDEYVKSFDDIKALGLRKKGYGRRFLAPRL
STSP*
back to top

spliced messenger RNA

>Ggra4929.t1 ID=Ggra4929.t1|Name=Ggra4929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000157_pilon:207947..209161+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGGCCCTTGGTCTTTTTGCTGGTGTTCACCGTGCTTATGTTGTT
TCAGAATGCTTCACTTCCTCAGAAAGGACACACCCAACATTTGTCTTCTT
TCAACTTTGATTATGTTGCTACCGTGTTCCCAAGTTATCGCACTCCACGT
TGTGTGCTTCTCCGATGTGGACCCTCTAGACAACCTCAAACCACAATCAT
TACAAGTTGCGACACGCTGCAAGCTACTGTCGTCAAGACCAAGACCAACC
TTACAGCACGTCATTGCGTTTCGGACTTTCTCCTCACACATTGGGATACG
CTGGAGGGCACGTATAAGCATGGTGTTTCGTATGCCACACATAGCATTCT
ACTGGCGACAGATGCCAGAGACCTTCCGTTTAGCATGAATTCCATATCGC
TGTCGCTAAACGAGCAGAGGAAGCTTATCAGCACGCAGTGGCTTTCATTC
CGCCCTTCGAATCAGACGCGTAACTTGCTGCGAGCCTGGCTCAACAACGC
GAAGAATCACCCCACCAACGAGAACCTAGCTCTCACACAGATACGCGGTT
GTGCCGGTAGAGACATAGCGTGTCACTCTCGATACGGTGTGATTGGCGCC
ATTTGCCACAAACCGCTTCGATGCGGAAATGGAAATTCATTCTTCATGGG
CGCTGCAAGAGCCGTCATTATTCTAGCCTTTGTACAGGCGTCCATACTTA
CTGCAAAGCAAACGAGAATACCTATGGAATTCATCGCTATTTTGTTGCTT
TGCGTTTCTCTTTTTTCCATGAAGTGGACAAATGCTGCTTGCACTATTGC
TAGATCTCTGTTTTGTCGTTGTAAGACCAGTTTAGTAGGTGCGGCAGAAG
TGGACGGTACGCTCTTTACTGGCGATTTGAGAGGGTGGTACGAAGGTCGG
GCATATTTTCTTCGCGATGGAGTGTACGAAGCACGGGTGACAGGCGGGAT
GCAACCCCTCTTCCCTCCGCTTTTCGGGCTTTACATGTTCTTCAAACGCG
TGCTGGGCGACTGGTTTTTGTTCTCAGGAGCAATGGCTGTTTTGGTTTCG
GCGGGAGTATCTAGACTCTTGCTGTTTGTTTCTTCTTGGCGAAAGGGAGA
TGATCATGTAAAGGATGAGTATGTGAAAAGTTTCGATGACATTAAGGCTC
TTGGTTTGAGAAAGAAAGGATATGGAAGACGATTTCTGGCTCCGAGACTT
AGCACCTCGCCGTAG
back to top

protein sequence of Ggra4929.t1

>Ggra4929.t1 ID=Ggra4929.t1|Name=Ggra4929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=405bp
MLRPLVFLLVFTVLMLFQNASLPQKGHTQHLSSFNFDYVATVFPSYRTPR
CVLLRCGPSRQPQTTIITSCDTLQATVVKTKTNLTARHCVSDFLLTHWDT
LEGTYKHGVSYATHSILLATDARDLPFSMNSISLSLNEQRKLISTQWLSF
RPSNQTRNLLRAWLNNAKNHPTNENLALTQIRGCAGRDIACHSRYGVIGA
ICHKPLRCGNGNSFFMGAARAVIILAFVQASILTAKQTRIPMEFIAILLL
CVSLFSMKWTNAACTIARSLFCRCKTSLVGAAEVDGTLFTGDLRGWYEGR
AYFLRDGVYEARVTGGMQPLFPPLFGLYMFFKRVLGDWFLFSGAMAVLVS
AGVSRLLLFVSSWRKGDDHVKDEYVKSFDDIKALGLRKKGYGRRFLAPRL
STSP*
back to top

mRNA from alignment at tig00000157_pilon:207947..209161+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4929.t1 ID=Ggra4929.t1|Name=Ggra4929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000157_pilon:207947..209161+ (Gracilaria gracilis GNS1m male)
ATGCTTCGGCCCTTGGTCTTTTTGCTGGTGTTCACCGTGCTTATGTTGTT
TCAGAATGCTTCACTTCCTCAGAAAGGACACACCCAACATTTGTCTTCTT
TCAACTTTGATTATGTTGCTACCGTGTTCCCAAGTTATCGCACTCCACGT
TGTGTGCTTCTCCGATGTGGACCCTCTAGACAACCTCAAACCACAATCAT
TACAAGTTGCGACACGCTGCAAGCTACTGTCGTCAAGACCAAGACCAACC
TTACAGCACGTCATTGCGTTTCGGACTTTCTCCTCACACATTGGGATACG
CTGGAGGGCACGTATAAGCATGGTGTTTCGTATGCCACACATAGCATTCT
ACTGGCGACAGATGCCAGAGACCTTCCGTTTAGCATGAATTCCATATCGC
TGTCGCTAAACGAGCAGAGGAAGCTTATCAGCACGCAGTGGCTTTCATTC
CGCCCTTCGAATCAGACGCGTAACTTGCTGCGAGCCTGGCTCAACAACGC
GAAGAATCACCCCACCAACGAGAACCTAGCTCTCACACAGATACGCGGTT
GTGCCGGTAGAGACATAGCGTGTCACTCTCGATACGGTGTGATTGGCGCC
ATTTGCCACAAACCGCTTCGATGCGGAAATGGAAATTCATTCTTCATGGG
CGCTGCAAGAGCCGTCATTATTCTAGCCTTTGTACAGGCGTCCATACTTA
CTGCAAAGCAAACGAGAATACCTATGGAATTCATCGCTATTTTGTTGCTT
TGCGTTTCTCTTTTTTCCATGAAGTGGACAAATGCTGCTTGCACTATTGC
TAGATCTCTGTTTTGTCGTTGTAAGACCAGTTTAGTAGGTGCGGCAGAAG
TGGACGGTACGCTCTTTACTGGCGATTTGAGAGGGTGGTACGAAGGTCGG
GCATATTTTCTTCGCGATGGAGTGTACGAAGCACGGGTGACAGGCGGGAT
GCAACCCCTCTTCCCTCCGCTTTTCGGGCTTTACATGTTCTTCAAACGCG
TGCTGGGCGACTGGTTTTTGTTCTCAGGAGCAATGGCTGTTTTGGTTTCG
GCGGGAGTATCTAGACTCTTGCTGTTTGTTTCTTCTTGGCGAAAGGGAGA
TGATCATGTAAAGGATGAGTATGTGAAAAGTTTCGATGACATTAAGGCTC
TTGGTTTGAGAAAGAAAGGATATGGAAGACGATTTCTGGCTCCGAGACTT
AGCACCTCGCCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000157_pilon:207947..209161+

>Ggra4929.t1 ID=Ggra4929.t1|Name=Ggra4929.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00000157_pilon:207947..209161+ (Gracilaria gracilis GNS1m male)
ATGCTTCGGCCCTTGGTCTTTTTGCTGGTGTTCACCGTGCTTATGTTGTT
TCAGAATGCTTCACTTCCTCAGAAAGGACACACCCAACATTTGTCTTCTT
TCAACTTTGATTATGTTGCTACCGTGTTCCCAAGTTATCGCACTCCACGT
TGTGTGCTTCTCCGATGTGGACCCTCTAGACAACCTCAAACCACAATCAT
TACAAGTTGCGACACGCTGCAAGCTACTGTCGTCAAGACCAAGACCAACC
TTACAGCACGTCATTGCGTTTCGGACTTTCTCCTCACACATTGGGATACG
CTGGAGGGCACGTATAAGCATGGTGTTTCGTATGCCACACATAGCATTCT
ACTGGCGACAGATGCCAGAGACCTTCCGTTTAGCATGAATTCCATATCGC
TGTCGCTAAACGAGCAGAGGAAGCTTATCAGCACGCAGTGGCTTTCATTC
CGCCCTTCGAATCAGACGCGTAACTTGCTGCGAGCCTGGCTCAACAACGC
GAAGAATCACCCCACCAACGAGAACCTAGCTCTCACACAGATACGCGGTT
GTGCCGGTAGAGACATAGCGTGTCACTCTCGATACGGTGTGATTGGCGCC
ATTTGCCACAAACCGCTTCGATGCGGAAATGGAAATTCATTCTTCATGGG
CGCTGCAAGAGCCGTCATTATTCTAGCCTTTGTACAGGCGTCCATACTTA
CTGCAAAGCAAACGAGAATACCTATGGAATTCATCGCTATTTTGTTGCTT
TGCGTTTCTCTTTTTTCCATGAAGTGGACAAATGCTGCTTGCACTATTGC
TAGATCTCTGTTTTGTCGTTGTAAGACCAGTTTAGTAGGTGCGGCAGAAG
TGGACGGTACGCTCTTTACTGGCGATTTGAGAGGGTGGTACGAAGGTCGG
GCATATTTTCTTCGCGATGGAGTGTACGAAGCACGGGTGACAGGCGGGAT
GCAACCCCTCTTCCCTCCGCTTTTCGGGCTTTACATGTTCTTCAAACGCG
TGCTGGGCGACTGGTTTTTGTTCTCAGGAGCAATGGCTGTTTTGGTTTCG
GCGGGAGTATCTAGACTCTTGCTGTTTGTTTCTTCTTGGCGAAAGGGAGA
TGATCATGTAAAGGATGAGTATGTGAAAAGTTTCGATGACATTAAGGCTC
TTGGTTTGAGAAAGAAAGGATATGGAAGACGATTTCTGGCTCCGAGACTT
AGCACCTCGCCGTAG
back to top