Ggra4844.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4844.t1
Unique Name	Ggra4844.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	584

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:261861..263612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LG51
Preferred name	GTPBP3
PFAMs	MMR_HSR1,MnmE_helical,TrmE_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00053,RC00209,RC00870
KEGG ko	ko:K03650,ko:K10769
KEGG Reaction	R08701
GOs	GO:0000166,GO:0000959,GO:0000963,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009790,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0070525,GO:0070899,GO:0070900,GO:0071704,GO:0090304,GO:0090646,GO:0097159,GO:0097367,GO:0140053,GO:1900864,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	8.77e-127
EggNOG OGs	COG0486@1\|root,KOG1191@2759\|Eukaryota
Description	GTP binding
COG category	D
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4844	Ggra4844	Gracilaria gracilis GNS1m male	gene	tig00000090_pilon 261861..263612 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4844.t1.start1	Ggra4844.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000090_pilon 261861..261863 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4844.t1.CDS1	Ggra4844.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000090_pilon 261861..263612 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4844.t1.exon1	Ggra4844.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000090_pilon 261861..263612 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4844.t1.stop1	Ggra4844.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000090_pilon 263610..263612 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4844.t1	Ggra4844.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000090_pilon 261861..263612 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000090_pilon:261861..263612+
coding sequence from alignment at tig00000090_pilon:261861..263612+

mRNA sequence

>Ggra4844.t1 ID=Ggra4844.t1|Name=Ggra4844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=584bp
MSERPRLALDFPLRRHRSTSMALLFARSASVSRSGAVTLATFRGTFCRRL
RPPVPVVHRPNRTRLSIRPLSTRDHSPQVNLYTSPLSVPYNDFQEDTIFA
LSSGAGVTAGVAVIRISGPHASACLRRLLRSQSPSAIPPPRYASLRRLYH
PISAELLDEALVLCFPSPKSFTGEDVVELHVHGSRAVISAVVDAIADCAS
PQLVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQF
TGHLKQTLQVWRADIKTCLAHVEAVIDFGDDVDDEVFEQIIPRIRDLRDR
IQTHLHDAHRGEIIRGGARVAIVGEPNAGKSTLLNALAKRPAAIVSPHAG
TTRDVVEVQMDLNGLAVTVSDTAGLRDSTNDPIEMEGMRRARDAASRADV
TVLVHDVTAGDIGAAIRTLPNRLSSTDSDPESKIYSERHLVCVLNKVDLV
DKAEHDILGDAYKVFKTSLLQNEGLTELVDHLESTIRSICEGSDTRGSAE
KEISASSMPIITRARHRHHMKNAVSALDSFLDGRSGSDPSLYLPMDLAAE
DLRIAAKELGAITGKIDCEEVLDLIFQEFCIGK*

spliced messenger RNA

>Ggra4844.t1 ID=Ggra4844.t1|Name=Ggra4844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000090_pilon:261861..263612+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAACGACCTCGACTCGCTCTCGATTTCCCCCTGCGGCGTCATCG
AAGCACATCAATGGCGCTACTGTTTGCGCGAAGTGCCTCTGTATCGCGCT
CAGGGGCCGTCACCCTCGCAACGTTTCGCGGCACTTTCTGCCGCCGATTA
CGCCCGCCAGTTCCTGTGGTACATCGACCCAATCGCACGCGACTCAGCAT
TCGTCCGCTTTCCACGCGAGACCATTCGCCACAGGTGAACCTCTACACGT
CCCCGCTCAGCGTTCCTTATAACGACTTTCAAGAAGACACCATCTTTGCC
TTATCGTCTGGCGCGGGTGTTACAGCTGGTGTGGCCGTTATTCGAATATC
CGGACCGCACGCCAGCGCTTGCCTTCGGAGACTTCTTCGCTCTCAATCAC
CGTCAGCTATTCCACCCCCGCGATACGCTTCATTGCGCAGATTGTATCAT
CCCATATCAGCAGAGCTACTTGACGAGGCGCTTGTTCTCTGCTTCCCAAG
TCCGAAGAGCTTCACTGGCGAGGACGTGGTTGAGTTGCATGTGCACGGGT
CAAGAGCAGTTATCAGTGCTGTGGTTGACGCAATCGCGGACTGCGCTTCT
CCGCAGCTTGTAGTACGCCCCGCTGAACGCGGCGAATTTACAAGGAGAGC
ATTCGAAAATGGACAGATGGATCTCACAGCCGTCGAGGGTCTGGCAGACC
TCATAGCGGCCGAAACTGCAATGCAACGAAAACAAGCCTTGCGACAATTC
ACGGGTCATCTCAAACAAACCCTACAAGTATGGCGCGCCGATATCAAAAC
CTGCTTGGCTCACGTTGAAGCTGTGATCGACTTTGGAGATGATGTTGATG
ACGAAGTATTTGAGCAAATTATTCCCCGCATCCGCGACCTGCGCGATCGA
ATCCAAACTCATCTTCATGATGCTCATAGAGGCGAAATCATTCGCGGCGG
CGCTCGAGTTGCAATTGTTGGCGAACCGAATGCTGGAAAGAGTACATTGC
TAAATGCGCTTGCGAAGAGACCTGCGGCAATTGTTTCTCCTCACGCGGGT
ACTACTCGAGACGTTGTCGAAGTTCAAATGGACCTTAATGGACTTGCTGT
CACCGTGAGCGATACGGCAGGGCTACGGGATAGCACAAACGACCCCATTG
AAATGGAAGGTATGCGACGGGCCCGAGACGCTGCGTCGAGAGCGGACGTC
ACTGTTCTGGTTCACGATGTCACAGCAGGAGACATAGGTGCAGCAATACG
AACGTTACCAAATCGACTGTCGTCAACTGATTCCGATCCAGAGTCAAAGA
TCTACTCAGAAAGACACTTAGTTTGTGTTTTGAACAAGGTAGATTTGGTC
GACAAAGCCGAACACGACATTCTTGGCGACGCTTACAAAGTTTTCAAAAC
CAGCTTGTTGCAAAATGAAGGGCTGACGGAATTAGTCGATCACCTGGAAT
CGACGATTCGAAGCATATGCGAAGGGAGTGACACAAGAGGTTCTGCCGAG
AAAGAAATATCTGCTAGCAGTATGCCTATTATTACAAGAGCACGACACAG
ACATCACATGAAAAACGCCGTTTCTGCTTTGGACTCGTTTTTGGATGGCA
GAAGCGGTTCAGACCCATCTCTTTATCTGCCCATGGATCTCGCAGCCGAA
GACCTTCGTATTGCCGCCAAAGAACTTGGTGCCATCACCGGAAAGATTGA
CTGCGAAGAAGTTCTAGATTTGATCTTCCAAGAGTTTTGCATAGGAAAGT
AA

protein sequence of Ggra4844.t1

>Ggra4844.t1 ID=Ggra4844.t1|Name=Ggra4844.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=584bp
MSERPRLALDFPLRRHRSTSMALLFARSASVSRSGAVTLATFRGTFCRRL
RPPVPVVHRPNRTRLSIRPLSTRDHSPQVNLYTSPLSVPYNDFQEDTIFA
LSSGAGVTAGVAVIRISGPHASACLRRLLRSQSPSAIPPPRYASLRRLYH
PISAELLDEALVLCFPSPKSFTGEDVVELHVHGSRAVISAVVDAIADCAS
PQLVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQF
TGHLKQTLQVWRADIKTCLAHVEAVIDFGDDVDDEVFEQIIPRIRDLRDR
IQTHLHDAHRGEIIRGGARVAIVGEPNAGKSTLLNALAKRPAAIVSPHAG
TTRDVVEVQMDLNGLAVTVSDTAGLRDSTNDPIEMEGMRRARDAASRADV
TVLVHDVTAGDIGAAIRTLPNRLSSTDSDPESKIYSERHLVCVLNKVDLV
DKAEHDILGDAYKVFKTSLLQNEGLTELVDHLESTIRSICEGSDTRGSAE
KEISASSMPIITRARHRHHMKNAVSALDSFLDGRSGSDPSLYLPMDLAAE
DLRIAAKELGAITGKIDCEEVLDLIFQEFCIGK*

mRNA from alignment at tig00000090_pilon:261861..263612+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4844.t1 ID=Ggra4844.t1|Name=Ggra4844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000090_pilon:261861..263612+ (Gracilaria gracilis GNS1m male)
ATGAGCGAACGACCTCGACTCGCTCTCGATTTCCCCCTGCGGCGTCATCG
AAGCACATCAATGGCGCTACTGTTTGCGCGAAGTGCCTCTGTATCGCGCT
CAGGGGCCGTCACCCTCGCAACGTTTCGCGGCACTTTCTGCCGCCGATTA
CGCCCGCCAGTTCCTGTGGTACATCGACCCAATCGCACGCGACTCAGCAT
TCGTCCGCTTTCCACGCGAGACCATTCGCCACAGGTGAACCTCTACACGT
CCCCGCTCAGCGTTCCTTATAACGACTTTCAAGAAGACACCATCTTTGCC
TTATCGTCTGGCGCGGGTGTTACAGCTGGTGTGGCCGTTATTCGAATATC
CGGACCGCACGCCAGCGCTTGCCTTCGGAGACTTCTTCGCTCTCAATCAC
CGTCAGCTATTCCACCCCCGCGATACGCTTCATTGCGCAGATTGTATCAT
CCCATATCAGCAGAGCTACTTGACGAGGCGCTTGTTCTCTGCTTCCCAAG
TCCGAAGAGCTTCACTGGCGAGGACGTGGTTGAGTTGCATGTGCACGGGT
CAAGAGCAGTTATCAGTGCTGTGGTTGACGCAATCGCGGACTGCGCTTCT
CCGCAGCTTGTAGTACGCCCCGCTGAACGCGGCGAATTTACAAGGAGAGC
ATTCGAAAATGGACAGATGGATCTCACAGCCGTCGAGGGTCTGGCAGACC
TCATAGCGGCCGAAACTGCAATGCAACGAAAACAAGCCTTGCGACAATTC
ACGGGTCATCTCAAACAAACCCTACAAGTATGGCGCGCCGATATCAAAAC
CTGCTTGGCTCACGTTGAAGCTGTGATCGACTTTGGAGATGATGTTGATG
ACGAAGTATTTGAGCAAATTATTCCCCGCATCCGCGACCTGCGCGATCGA
ATCCAAACTCATCTTCATGATGCTCATAGAGGCGAAATCATTCGCGGCGG
CGCTCGAGTTGCAATTGTTGGCGAACCGAATGCTGGAAAGAGTACATTGC
TAAATGCGCTTGCGAAGAGACCTGCGGCAATTGTTTCTCCTCACGCGGGT
ACTACTCGAGACGTTGTCGAAGTTCAAATGGACCTTAATGGACTTGCTGT
CACCGTGAGCGATACGGCAGGGCTACGGGATAGCACAAACGACCCCATTG
AAATGGAAGGTATGCGACGGGCCCGAGACGCTGCGTCGAGAGCGGACGTC
ACTGTTCTGGTTCACGATGTCACAGCAGGAGACATAGGTGCAGCAATACG
AACGTTACCAAATCGACTGTCGTCAACTGATTCCGATCCAGAGTCAAAGA
TCTACTCAGAAAGACACTTAGTTTGTGTTTTGAACAAGGTAGATTTGGTC
GACAAAGCCGAACACGACATTCTTGGCGACGCTTACAAAGTTTTCAAAAC
CAGCTTGTTGCAAAATGAAGGGCTGACGGAATTAGTCGATCACCTGGAAT
CGACGATTCGAAGCATATGCGAAGGGAGTGACACAAGAGGTTCTGCCGAG
AAAGAAATATCTGCTAGCAGTATGCCTATTATTACAAGAGCACGACACAG
ACATCACATGAAAAACGCCGTTTCTGCTTTGGACTCGTTTTTGGATGGCA
GAAGCGGTTCAGACCCATCTCTTTATCTGCCCATGGATCTCGCAGCCGAA
GACCTTCGTATTGCCGCCAAAGAACTTGGTGCCATCACCGGAAAGATTGA
CTGCGAAGAAGTTCTAGATTTGATCTTCCAAGAGTTTTGCATAGGAAAGT
AA

Coding sequence (CDS) from alignment at tig00000090_pilon:261861..263612+

>Ggra4844.t1 ID=Ggra4844.t1|Name=Ggra4844.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00000090_pilon:261861..263612+ (Gracilaria gracilis GNS1m male)
ATGAGCGAACGACCTCGACTCGCTCTCGATTTCCCCCTGCGGCGTCATCG
AAGCACATCAATGGCGCTACTGTTTGCGCGAAGTGCCTCTGTATCGCGCT
CAGGGGCCGTCACCCTCGCAACGTTTCGCGGCACTTTCTGCCGCCGATTA
CGCCCGCCAGTTCCTGTGGTACATCGACCCAATCGCACGCGACTCAGCAT
TCGTCCGCTTTCCACGCGAGACCATTCGCCACAGGTGAACCTCTACACGT
CCCCGCTCAGCGTTCCTTATAACGACTTTCAAGAAGACACCATCTTTGCC
TTATCGTCTGGCGCGGGTGTTACAGCTGGTGTGGCCGTTATTCGAATATC
CGGACCGCACGCCAGCGCTTGCCTTCGGAGACTTCTTCGCTCTCAATCAC
CGTCAGCTATTCCACCCCCGCGATACGCTTCATTGCGCAGATTGTATCAT
CCCATATCAGCAGAGCTACTTGACGAGGCGCTTGTTCTCTGCTTCCCAAG
TCCGAAGAGCTTCACTGGCGAGGACGTGGTTGAGTTGCATGTGCACGGGT
CAAGAGCAGTTATCAGTGCTGTGGTTGACGCAATCGCGGACTGCGCTTCT
CCGCAGCTTGTAGTACGCCCCGCTGAACGCGGCGAATTTACAAGGAGAGC
ATTCGAAAATGGACAGATGGATCTCACAGCCGTCGAGGGTCTGGCAGACC
TCATAGCGGCCGAAACTGCAATGCAACGAAAACAAGCCTTGCGACAATTC
ACGGGTCATCTCAAACAAACCCTACAAGTATGGCGCGCCGATATCAAAAC
CTGCTTGGCTCACGTTGAAGCTGTGATCGACTTTGGAGATGATGTTGATG
ACGAAGTATTTGAGCAAATTATTCCCCGCATCCGCGACCTGCGCGATCGA
ATCCAAACTCATCTTCATGATGCTCATAGAGGCGAAATCATTCGCGGCGG
CGCTCGAGTTGCAATTGTTGGCGAACCGAATGCTGGAAAGAGTACATTGC
TAAATGCGCTTGCGAAGAGACCTGCGGCAATTGTTTCTCCTCACGCGGGT
ACTACTCGAGACGTTGTCGAAGTTCAAATGGACCTTAATGGACTTGCTGT
CACCGTGAGCGATACGGCAGGGCTACGGGATAGCACAAACGACCCCATTG
AAATGGAAGGTATGCGACGGGCCCGAGACGCTGCGTCGAGAGCGGACGTC
ACTGTTCTGGTTCACGATGTCACAGCAGGAGACATAGGTGCAGCAATACG
AACGTTACCAAATCGACTGTCGTCAACTGATTCCGATCCAGAGTCAAAGA
TCTACTCAGAAAGACACTTAGTTTGTGTTTTGAACAAGGTAGATTTGGTC
GACAAAGCCGAACACGACATTCTTGGCGACGCTTACAAAGTTTTCAAAAC
CAGCTTGTTGCAAAATGAAGGGCTGACGGAATTAGTCGATCACCTGGAAT
CGACGATTCGAAGCATATGCGAAGGGAGTGACACAAGAGGTTCTGCCGAG
AAAGAAATATCTGCTAGCAGTATGCCTATTATTACAAGAGCACGACACAG
ACATCACATGAAAAACGCCGTTTCTGCTTTGGACTCGTTTTTGGATGGCA
GAAGCGGTTCAGACCCATCTCTTTATCTGCCCATGGATCTCGCAGCCGAA
GACCTTCGTATTGCCGCCAAAGAACTTGGTGCCATCACCGGAAAGATTGA
CTGCGAAGAAGTTCTAGATTTGATCTTCCAAGAGTTTTGCATAGGAAAGT
AA