Ggra4830.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4830.t1
Unique NameGgra4830.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:236604..236937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002501864.1
PFAMsPet100
Max annot lvl33090|Viridiplantae
KEGG koko:K18187
Evalue4.49e-09
EggNOG OGs2CYCQ@1|root,2S3KV@2759|Eukaryota,37W49@33090|Viridiplantae
DescriptionPet100
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4830Ggra4830Gracilaria gracilis GNS1m malegenetig00000090_pilon 236604..236937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4830.t1Ggra4830.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 236604..236937 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4830.t1.start1Ggra4830.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 236604..236606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4830.t1.CDS1Ggra4830.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 236604..236735 +
Ggra4830.t1.CDS2Ggra4830.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 236800..236937 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4830.t1.exon1Ggra4830.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 236604..236735 +
Ggra4830.t1.exon2Ggra4830.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 236800..236937 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4830.t1.intron1Ggra4830.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 236736..236799 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4830.t1.stop1Ggra4830.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 236935..236937 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4830.t1 ID=Ggra4830.t1|Name=Ggra4830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=90bp
MASGHAGRQWLEILKFSVYVGTPIAATIYLGTGAYPYLEKIIHNTSYIVY
PPEGEAPPTSANEIKIAREERRAKYRRHSSESQMNEKME*
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spliced messenger RNA

>Ggra4830.t1 ID=Ggra4830.t1|Name=Ggra4830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp|location=Sequence derived from alignment at tig00000090_pilon:236604..236937+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCGGACATGCGGGGAGGCAATGGCTAGAGATCTTGAAGTTCAG
CGTTTATGTCGGTACTCCCATTGCTGCAACCATTTACCTTGGAACGGGGG
CGTACCCGTACTTGGAGAAGATCATTCACAACACATCATATATTGTTTAT
CCACCTGAGGGAGAAGCACCCCCAACATCTGCCAATGAGATAAAGATTGC
CAGGGAGGAAAGAAGAGCGAAGTACAGACGGCATTCGTCCGAGTCGCAGA
TGAATGAAAAGATGGAGTAA
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protein sequence of Ggra4830.t1

>Ggra4830.t1 ID=Ggra4830.t1|Name=Ggra4830.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=90bp
MASGHAGRQWLEILKFSVYVGTPIAATIYLGTGAYPYLEKIIHNTSYIVY
PPEGEAPPTSANEIKIAREERRAKYRRHSSESQMNEKME*
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mRNA from alignment at tig00000090_pilon:236604..236937+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4830.t1 ID=Ggra4830.t1|Name=Ggra4830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp|location=Sequence derived from alignment at tig00000090_pilon:236604..236937+ (Gracilaria gracilis GNS1m male)
ATGGCCAGCGGACATGCGGGGAGGCAATGGCTAGAGATCTTGAAGTTCAG
CGTTTATGTCGGTACTCCCATTGCTGCAACCATTTACCTTGGAACGGGGG
CGTACCCGTACTTGGAGAAGATCATTCACAACGTAAGCTTCAATTTGTTC
TTTACAACGCGCACTTCAGAATGCTGACCTGTACCTCTTACGGTAGACAT
CATATATTGTTTATCCACCTGAGGGAGAAGCACCCCCAACATCTGCCAAT
GAGATAAAGATTGCCAGGGAGGAAAGAAGAGCGAAGTACAGACGGCATTC
GTCCGAGTCGCAGATGAATGAAAAGATGGAGTAA
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Coding sequence (CDS) from alignment at tig00000090_pilon:236604..236937+

>Ggra4830.t1 ID=Ggra4830.t1|Name=Ggra4830.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=270bp|location=Sequence derived from alignment at tig00000090_pilon:236604..236937+ (Gracilaria gracilis GNS1m male)
ATGGCCAGCGGACATGCGGGGAGGCAATGGCTAGAGATCTTGAAGTTCAG
CGTTTATGTCGGTACTCCCATTGCTGCAACCATTTACCTTGGAACGGGGG
CGTACCCGTACTTGGAGAAGATCATTCACAACACATCATATATTGTTTAT
CCACCTGAGGGAGAAGCACCCCCAACATCTGCCAATGAGATAAAGATTGC
CAGGGAGGAAAGAAGAGCGAAGTACAGACGGCATTCGTCCGAGTCGCAGA
TGAATGAAAAGATGGAGTAA
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