Ggra4728.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4728.t1
Unique NameGgra4728.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:80104..81597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4728Ggra4728Gracilaria gracilis GNS1m malegenetig00000065_pilon 80104..81597 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4728.t1.stop1Ggra4728.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 80104..80106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4728.t1.CDS1Ggra4728.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 80104..81597 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4728.t1.exon1Ggra4728.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 80104..81597 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4728.t1.start1Ggra4728.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 81595..81597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4728.t1Ggra4728.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 80104..81597 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4728.t1 ID=Ggra4728.t1|Name=Ggra4728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp
MSRNGSMEDPLLAGLSRLSTSHTNQQRASNPPHASASTPAPQVTNRLQLT
EPTSALEHRRSRQPPPSTHSRQGSQLANPNTSGGQAAHELYAERNSTPTL
NQLSRRRTTSESSSRHTSGSFPHRLSSSDQSTNQQSAPTTIAPLNPLHRS
EIYELIERATGLGRPTDGDPAVADQLLHLIKTGSIPPRLICEYVVAGSGP
NEVKVNARALWLMHYLMVEGGPLVLPEVVQAPDGRNPPAVKLVLNVLRSF
GYESDAEGLDVLHDDEKLRTMSFPPDKQIPGDALQQSKGERTYEAAAVET
YAIALGRKAWFHYRYSVVEVNYSLDRFYRAWHVENDCDPMMHAKNEEVVK
LTRSKGALQDMCLLVCAMTAAAHRLQRGKVAFSICLQALADACNAYSYAL
YLRTKVDSRGMEEFDLEIQRDVLAFLLRRWEHKGGKHFERLKRYVDERVY
DLIMNVSSVAVRPESRHRREIEIEVTSFEALHKSFLYLRDRNKFCAS*
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spliced messenger RNA

>Ggra4728.t1 ID=Ggra4728.t1|Name=Ggra4728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000065_pilon:80104..81597- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGAAACGGGTCCATGGAGGACCCACTTCTAGCCGGTTTGAGCCG
CCTGTCCACCTCTCACACAAATCAACAGCGCGCTTCCAATCCGCCGCACG
CCAGCGCTTCTACACCGGCCCCACAAGTTACCAATCGTCTCCAGCTAACT
GAACCAACATCAGCCCTCGAGCATCGCCGATCCAGGCAGCCTCCACCTTC
CACTCACTCGCGACAAGGCAGCCAACTCGCCAACCCAAATACCTCTGGTG
GTCAAGCCGCTCATGAATTGTACGCAGAAAGAAACTCAACCCCGACCCTT
AACCAGCTCTCCCGGAGGCGAACCACGAGCGAATCTTCATCCCGTCATAC
TTCAGGCTCTTTTCCGCACCGCCTGTCCAGCTCTGATCAGTCCACGAATC
AGCAAAGTGCTCCGACAACGATCGCGCCGCTCAACCCTTTACACCGTTCA
GAAATATATGAGTTGATAGAACGAGCTACCGGCTTGGGGCGCCCCACCGA
TGGTGATCCGGCGGTAGCAGACCAACTGTTACACCTCATAAAGACCGGTT
CCATTCCACCTCGGCTCATTTGCGAGTATGTGGTAGCCGGCTCCGGTCCG
AATGAAGTCAAAGTCAATGCTCGCGCCTTGTGGCTCATGCACTATTTGAT
GGTCGAAGGGGGACCGCTCGTGCTTCCAGAAGTTGTGCAAGCACCTGATG
GACGAAACCCACCCGCCGTTAAACTTGTGCTCAATGTTCTCCGCAGCTTT
GGGTACGAGAGTGATGCGGAAGGATTGGATGTACTACACGATGACGAGAA
ACTAAGAACCATGTCATTTCCTCCTGACAAACAGATCCCAGGCGACGCTT
TGCAACAGTCTAAGGGGGAGAGAACGTACGAAGCTGCCGCCGTGGAAACT
TATGCAATTGCGCTAGGTCGCAAAGCGTGGTTTCACTACCGATACTCCGT
TGTGGAGGTGAACTATTCGCTCGATAGGTTTTACCGCGCCTGGCACGTTG
AGAACGACTGTGATCCGATGATGCACGCAAAGAACGAAGAAGTTGTGAAG
CTCACGCGGTCAAAGGGGGCGTTGCAGGATATGTGCCTATTGGTATGTGC
CATGACGGCCGCAGCTCATCGACTACAGCGGGGTAAGGTTGCCTTTTCTA
TCTGCCTTCAAGCACTTGCGGACGCTTGCAATGCGTATAGTTACGCTCTT
TACCTAAGGACAAAAGTGGACAGCAGGGGTATGGAGGAGTTTGACTTGGA
GATACAGCGAGATGTTCTAGCTTTTTTGTTGAGAAGATGGGAACACAAAG
GTGGAAAACACTTCGAACGCCTTAAGCGATACGTTGATGAACGTGTGTAT
GACTTGATAATGAATGTAAGTTCGGTTGCGGTGAGACCAGAAAGTCGACA
TCGAAGGGAGATAGAAATCGAAGTCACTTCGTTCGAAGCGTTGCACAAAT
CGTTTCTGTATCTACGAGACCGTAATAAATTTTGCGCAAGCTAG
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protein sequence of Ggra4728.t1

>Ggra4728.t1 ID=Ggra4728.t1|Name=Ggra4728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=498bp
MSRNGSMEDPLLAGLSRLSTSHTNQQRASNPPHASASTPAPQVTNRLQLT
EPTSALEHRRSRQPPPSTHSRQGSQLANPNTSGGQAAHELYAERNSTPTL
NQLSRRRTTSESSSRHTSGSFPHRLSSSDQSTNQQSAPTTIAPLNPLHRS
EIYELIERATGLGRPTDGDPAVADQLLHLIKTGSIPPRLICEYVVAGSGP
NEVKVNARALWLMHYLMVEGGPLVLPEVVQAPDGRNPPAVKLVLNVLRSF
GYESDAEGLDVLHDDEKLRTMSFPPDKQIPGDALQQSKGERTYEAAAVET
YAIALGRKAWFHYRYSVVEVNYSLDRFYRAWHVENDCDPMMHAKNEEVVK
LTRSKGALQDMCLLVCAMTAAAHRLQRGKVAFSICLQALADACNAYSYAL
YLRTKVDSRGMEEFDLEIQRDVLAFLLRRWEHKGGKHFERLKRYVDERVY
DLIMNVSSVAVRPESRHRREIEIEVTSFEALHKSFLYLRDRNKFCAS*
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mRNA from alignment at tig00000065_pilon:80104..81597-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4728.t1 ID=Ggra4728.t1|Name=Ggra4728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000065_pilon:80104..81597- (Gracilaria gracilis GNS1m male)
ATGAGCAGAAACGGGTCCATGGAGGACCCACTTCTAGCCGGTTTGAGCCG
CCTGTCCACCTCTCACACAAATCAACAGCGCGCTTCCAATCCGCCGCACG
CCAGCGCTTCTACACCGGCCCCACAAGTTACCAATCGTCTCCAGCTAACT
GAACCAACATCAGCCCTCGAGCATCGCCGATCCAGGCAGCCTCCACCTTC
CACTCACTCGCGACAAGGCAGCCAACTCGCCAACCCAAATACCTCTGGTG
GTCAAGCCGCTCATGAATTGTACGCAGAAAGAAACTCAACCCCGACCCTT
AACCAGCTCTCCCGGAGGCGAACCACGAGCGAATCTTCATCCCGTCATAC
TTCAGGCTCTTTTCCGCACCGCCTGTCCAGCTCTGATCAGTCCACGAATC
AGCAAAGTGCTCCGACAACGATCGCGCCGCTCAACCCTTTACACCGTTCA
GAAATATATGAGTTGATAGAACGAGCTACCGGCTTGGGGCGCCCCACCGA
TGGTGATCCGGCGGTAGCAGACCAACTGTTACACCTCATAAAGACCGGTT
CCATTCCACCTCGGCTCATTTGCGAGTATGTGGTAGCCGGCTCCGGTCCG
AATGAAGTCAAAGTCAATGCTCGCGCCTTGTGGCTCATGCACTATTTGAT
GGTCGAAGGGGGACCGCTCGTGCTTCCAGAAGTTGTGCAAGCACCTGATG
GACGAAACCCACCCGCCGTTAAACTTGTGCTCAATGTTCTCCGCAGCTTT
GGGTACGAGAGTGATGCGGAAGGATTGGATGTACTACACGATGACGAGAA
ACTAAGAACCATGTCATTTCCTCCTGACAAACAGATCCCAGGCGACGCTT
TGCAACAGTCTAAGGGGGAGAGAACGTACGAAGCTGCCGCCGTGGAAACT
TATGCAATTGCGCTAGGTCGCAAAGCGTGGTTTCACTACCGATACTCCGT
TGTGGAGGTGAACTATTCGCTCGATAGGTTTTACCGCGCCTGGCACGTTG
AGAACGACTGTGATCCGATGATGCACGCAAAGAACGAAGAAGTTGTGAAG
CTCACGCGGTCAAAGGGGGCGTTGCAGGATATGTGCCTATTGGTATGTGC
CATGACGGCCGCAGCTCATCGACTACAGCGGGGTAAGGTTGCCTTTTCTA
TCTGCCTTCAAGCACTTGCGGACGCTTGCAATGCGTATAGTTACGCTCTT
TACCTAAGGACAAAAGTGGACAGCAGGGGTATGGAGGAGTTTGACTTGGA
GATACAGCGAGATGTTCTAGCTTTTTTGTTGAGAAGATGGGAACACAAAG
GTGGAAAACACTTCGAACGCCTTAAGCGATACGTTGATGAACGTGTGTAT
GACTTGATAATGAATGTAAGTTCGGTTGCGGTGAGACCAGAAAGTCGACA
TCGAAGGGAGATAGAAATCGAAGTCACTTCGTTCGAAGCGTTGCACAAAT
CGTTTCTGTATCTACGAGACCGTAATAAATTTTGCGCAAGCTAG
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Coding sequence (CDS) from alignment at tig00000065_pilon:80104..81597-

>Ggra4728.t1 ID=Ggra4728.t1|Name=Ggra4728.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000065_pilon:80104..81597- (Gracilaria gracilis GNS1m male)
ATGAGCAGAAACGGGTCCATGGAGGACCCACTTCTAGCCGGTTTGAGCCG
CCTGTCCACCTCTCACACAAATCAACAGCGCGCTTCCAATCCGCCGCACG
CCAGCGCTTCTACACCGGCCCCACAAGTTACCAATCGTCTCCAGCTAACT
GAACCAACATCAGCCCTCGAGCATCGCCGATCCAGGCAGCCTCCACCTTC
CACTCACTCGCGACAAGGCAGCCAACTCGCCAACCCAAATACCTCTGGTG
GTCAAGCCGCTCATGAATTGTACGCAGAAAGAAACTCAACCCCGACCCTT
AACCAGCTCTCCCGGAGGCGAACCACGAGCGAATCTTCATCCCGTCATAC
TTCAGGCTCTTTTCCGCACCGCCTGTCCAGCTCTGATCAGTCCACGAATC
AGCAAAGTGCTCCGACAACGATCGCGCCGCTCAACCCTTTACACCGTTCA
GAAATATATGAGTTGATAGAACGAGCTACCGGCTTGGGGCGCCCCACCGA
TGGTGATCCGGCGGTAGCAGACCAACTGTTACACCTCATAAAGACCGGTT
CCATTCCACCTCGGCTCATTTGCGAGTATGTGGTAGCCGGCTCCGGTCCG
AATGAAGTCAAAGTCAATGCTCGCGCCTTGTGGCTCATGCACTATTTGAT
GGTCGAAGGGGGACCGCTCGTGCTTCCAGAAGTTGTGCAAGCACCTGATG
GACGAAACCCACCCGCCGTTAAACTTGTGCTCAATGTTCTCCGCAGCTTT
GGGTACGAGAGTGATGCGGAAGGATTGGATGTACTACACGATGACGAGAA
ACTAAGAACCATGTCATTTCCTCCTGACAAACAGATCCCAGGCGACGCTT
TGCAACAGTCTAAGGGGGAGAGAACGTACGAAGCTGCCGCCGTGGAAACT
TATGCAATTGCGCTAGGTCGCAAAGCGTGGTTTCACTACCGATACTCCGT
TGTGGAGGTGAACTATTCGCTCGATAGGTTTTACCGCGCCTGGCACGTTG
AGAACGACTGTGATCCGATGATGCACGCAAAGAACGAAGAAGTTGTGAAG
CTCACGCGGTCAAAGGGGGCGTTGCAGGATATGTGCCTATTGGTATGTGC
CATGACGGCCGCAGCTCATCGACTACAGCGGGGTAAGGTTGCCTTTTCTA
TCTGCCTTCAAGCACTTGCGGACGCTTGCAATGCGTATAGTTACGCTCTT
TACCTAAGGACAAAAGTGGACAGCAGGGGTATGGAGGAGTTTGACTTGGA
GATACAGCGAGATGTTCTAGCTTTTTTGTTGAGAAGATGGGAACACAAAG
GTGGAAAACACTTCGAACGCCTTAAGCGATACGTTGATGAACGTGTGTAT
GACTTGATAATGAATGTAAGTTCGGTTGCGGTGAGACCAGAAAGTCGACA
TCGAAGGGAGATAGAAATCGAAGTCACTTCGTTCGAAGCGTTGCACAAAT
CGTTTCTGTATCTACGAGACCGTAATAAATTTTGCGCAAGCTAG
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