Ggra4658.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4658.t1
Unique NameGgra4658.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:576028..576435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38654.XP_006015901.1
Preferred nameTMEM53
PFAMsDUF829
Max annot lvl33208|Metazoa
Evalue6.11e-06
EggNOG OGsKOG2521@1|root,KOG2521@2759|Eukaryota,39R86@33154|Opisthokonta,3BARH@33208|Metazoa,3D3M9@33213|Bilateria,482I6@7711|Chordata,494FC@7742|Vertebrata
DescriptionEukaryotic protein of unknown function (DUF829)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4658Ggra4658Gracilaria gracilis GNS1m malegenetig00000061_pilon 576028..576435 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4658.t1.stop1Ggra4658.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000061_pilon 576028..576030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4658.t1.CDS1Ggra4658.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000061_pilon 576028..576435 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4658.t1.exon1Ggra4658.t1.exon1Gracilaria gracilis GNS1m maleexontig00000061_pilon 576028..576435 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4658.t1.start1Ggra4658.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000061_pilon 576433..576435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4658.t1Ggra4658.t1Gracilaria gracilis GNS1m malepolypeptidetig00000061_pilon 576028..576435 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4658.t1 ID=Ggra4658.t1|Name=Ggra4658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=136bp
MPAVEQYTKKTNTGNAVLERILTPRPSAAPPPPAVLFGWGGASMPHLAKY
AQLYEVMRYNCVQLVTPPSVIFAMRPVANAKFPLSVLRILPAHARLTDGG
LVLHKFSNAGATLSPHLSHSFGATNRSHVVGPPSS*
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spliced messenger RNA

>Ggra4658.t1 ID=Ggra4658.t1|Name=Ggra4658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000061_pilon:576028..576435- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCGTCGAGCAGTACACGAAAAAGACCAACACCGGCAACGCCGT
GCTGGAACGCATCCTCACCCCACGCCCGAGTGCGGCCCCGCCGCCCCCCG
CCGTGCTCTTCGGCTGGGGCGGGGCGTCCATGCCGCACCTCGCAAAGTAC
GCCCAGCTGTACGAGGTCATGCGCTACAACTGCGTGCAGCTCGTCACCCC
GCCCTCTGTCATCTTCGCCATGCGTCCCGTCGCCAACGCCAAGTTTCCGC
TCTCCGTGCTGCGCATCCTCCCCGCCCACGCGCGCCTCACCGACGGCGGC
CTCGTGCTACACAAGTTCTCCAACGCCGGCGCCACTCTGTCGCCGCACCT
GTCCCACTCTTTCGGCGCCACCAATCGCTCGCACGTCGTGGGCCCCCCAA
GTTCCTGA
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protein sequence of Ggra4658.t1

>Ggra4658.t1 ID=Ggra4658.t1|Name=Ggra4658.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MPAVEQYTKKTNTGNAVLERILTPRPSAAPPPPAVLFGWGGASMPHLAKY
AQLYEVMRYNCVQLVTPPSVIFAMRPVANAKFPLSVLRILPAHARLTDGG
LVLHKFSNAGATLSPHLSHSFGATNRSHVVGPPSS*
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mRNA from alignment at tig00000061_pilon:576028..576435-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4658.t1 ID=Ggra4658.t1|Name=Ggra4658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000061_pilon:576028..576435- (Gracilaria gracilis GNS1m male)
ATGCCCGCCGTCGAGCAGTACACGAAAAAGACCAACACCGGCAACGCCGT
GCTGGAACGCATCCTCACCCCACGCCCGAGTGCGGCCCCGCCGCCCCCCG
CCGTGCTCTTCGGCTGGGGCGGGGCGTCCATGCCGCACCTCGCAAAGTAC
GCCCAGCTGTACGAGGTCATGCGCTACAACTGCGTGCAGCTCGTCACCCC
GCCCTCTGTCATCTTCGCCATGCGTCCCGTCGCCAACGCCAAGTTTCCGC
TCTCCGTGCTGCGCATCCTCCCCGCCCACGCGCGCCTCACCGACGGCGGC
CTCGTGCTACACAAGTTCTCCAACGCCGGCGCCACTCTGTCGCCGCACCT
GTCCCACTCTTTCGGCGCCACCAATCGCTCGCACGTCGTGGGCCCCCCAA
GTTCCTGA
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Coding sequence (CDS) from alignment at tig00000061_pilon:576028..576435-

>Ggra4658.t1 ID=Ggra4658.t1|Name=Ggra4658.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000061_pilon:576028..576435- (Gracilaria gracilis GNS1m male)
ATGCCCGCCGTCGAGCAGTACACGAAAAAGACCAACACCGGCAACGCCGT
GCTGGAACGCATCCTCACCCCACGCCCGAGTGCGGCCCCGCCGCCCCCCG
CCGTGCTCTTCGGCTGGGGCGGGGCGTCCATGCCGCACCTCGCAAAGTAC
GCCCAGCTGTACGAGGTCATGCGCTACAACTGCGTGCAGCTCGTCACCCC
GCCCTCTGTCATCTTCGCCATGCGTCCCGTCGCCAACGCCAAGTTTCCGC
TCTCCGTGCTGCGCATCCTCCCCGCCCACGCGCGCCTCACCGACGGCGGC
CTCGTGCTACACAAGTTCTCCAACGCCGGCGCCACTCTGTCGCCGCACCT
GTCCCACTCTTTCGGCGCCACCAATCGCTCGCACGTCGTGGGCCCCCCAA
GTTCCTGA
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