Ggra4600.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4600.t1
Unique NameGgra4600.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:81452..81947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERM98255
PFAMsPAC3
Max annot lvl35493|Streptophyta
KEGG koko:K11877
Evalue3.61e-21
EggNOG OGsKOG4828@1|root,KOG4828@2759|Eukaryota,37VN3@33090|Viridiplantae,3GJEJ@35493|Streptophyta
DescriptionProteasome assembly chaperone
COG categoryS
BRITEko00000,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4600Ggra4600Gracilaria gracilis GNS1m malegenetig00000941_pilon 81452..81947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4600.t1Ggra4600.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 81452..81947 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4600.t1.start1Ggra4600.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 81452..81454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4600.t1.CDS1Ggra4600.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 81452..81649 +
Ggra4600.t1.CDS2Ggra4600.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000941_pilon 81717..81947 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4600.t1.exon1Ggra4600.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 81452..81649 +
Ggra4600.t1.exon2Ggra4600.t1.exon2Gracilaria gracilis GNS1m maleexontig00000941_pilon 81717..81947 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4600.t1.intron1Ggra4600.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000941_pilon 81650..81716 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4600.t1.stop1Ggra4600.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 81945..81947 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4600.t1 ID=Ggra4600.t1|Name=Ggra4600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=143bp
MVGTIVPSARQNAIPVTAPSDDSGHNAHFIKSATVQICDRRTDFLVQPFS
DRIFVLVTQREKMGTTLSASKEVTIAGAESFSVQTLVGIRDIPELELCAR
AIISKISEDGCPKPLLISLALRDHSMRTIRAVIEKVTELRVW*
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spliced messenger RNA

>Ggra4600.t1 ID=Ggra4600.t1|Name=Ggra4600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000941_pilon:81452..81947+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGTACTATCGTCCCTTCTGCGCGGCAAAACGCCATTCCCGTCAC
AGCACCGTCAGATGATAGTGGCCACAATGCGCATTTCATCAAGTCTGCAA
CCGTCCAAATATGCGACCGTCGCACAGATTTCTTGGTTCAACCGTTTTCG
GATCGTATATTTGTGCTTGTTACCCAAAGGGAGAAGATGGGCACAACGCT
ATCCGCAAGTAAAGAAGTCACCATAGCAGGCGCTGAATCTTTCTCGGTTC
AAACTTTGGTTGGAATACGAGACATTCCTGAGTTAGAGCTCTGTGCAAGG
GCAATCATTTCGAAGATATCGGAGGACGGATGTCCGAAGCCTCTTCTCAT
TTCGCTCGCTCTAAGGGACCATTCGATGAGGACGATCCGAGCAGTGATTG
AAAAAGTAACAGAACTGCGTGTATGGTGA
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protein sequence of Ggra4600.t1

>Ggra4600.t1 ID=Ggra4600.t1|Name=Ggra4600.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=143bp
MVGTIVPSARQNAIPVTAPSDDSGHNAHFIKSATVQICDRRTDFLVQPFS
DRIFVLVTQREKMGTTLSASKEVTIAGAESFSVQTLVGIRDIPELELCAR
AIISKISEDGCPKPLLISLALRDHSMRTIRAVIEKVTELRVW*
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mRNA from alignment at tig00000941_pilon:81452..81947+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4600.t1 ID=Ggra4600.t1|Name=Ggra4600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp|location=Sequence derived from alignment at tig00000941_pilon:81452..81947+ (Gracilaria gracilis GNS1m male)
ATGGTTGGTACTATCGTCCCTTCTGCGCGGCAAAACGCCATTCCCGTCAC
AGCACCGTCAGATGATAGTGGCCACAATGCGCATTTCATCAAGTCTGCAA
CCGTCCAAATATGCGACCGTCGCACAGATTTCTTGGTTCAACCGTTTTCG
GATCGTATATTTGTGCTTGTTACCCAAAGGGAGAAGATGGGCACAACGGT
AAGTGTGTCTTTCCTTCCTCACTAATCACTAAGAATGTGACACACAACGC
TAACATCCCAAATAGCTATCCGCAAGTAAAGAAGTCACCATAGCAGGCGC
TGAATCTTTCTCGGTTCAAACTTTGGTTGGAATACGAGACATTCCTGAGT
TAGAGCTCTGTGCAAGGGCAATCATTTCGAAGATATCGGAGGACGGATGT
CCGAAGCCTCTTCTCATTTCGCTCGCTCTAAGGGACCATTCGATGAGGAC
GATCCGAGCAGTGATTGAAAAAGTAACAGAACTGCGTGTATGGTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:81452..81947+

>Ggra4600.t1 ID=Ggra4600.t1|Name=Ggra4600.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=429bp|location=Sequence derived from alignment at tig00000941_pilon:81452..81947+ (Gracilaria gracilis GNS1m male)
ATGGTTGGTACTATCGTCCCTTCTGCGCGGCAAAACGCCATTCCCGTCAC
AGCACCGTCAGATGATAGTGGCCACAATGCGCATTTCATCAAGTCTGCAA
CCGTCCAAATATGCGACCGTCGCACAGATTTCTTGGTTCAACCGTTTTCG
GATCGTATATTTGTGCTTGTTACCCAAAGGGAGAAGATGGGCACAACGCT
ATCCGCAAGTAAAGAAGTCACCATAGCAGGCGCTGAATCTTTCTCGGTTC
AAACTTTGGTTGGAATACGAGACATTCCTGAGTTAGAGCTCTGTGCAAGG
GCAATCATTTCGAAGATATCGGAGGACGGATGTCCGAAGCCTCTTCTCAT
TTCGCTCGCTCTAAGGGACCATTCGATGAGGACGATCCGAGCAGTGATTG
AAAAAGTAACAGAACTGCGTGTATGGTGA
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