Ggra4515.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4515.t1
Unique NameGgra4515.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:795148..796382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6238.CBG10835
PFAMsHomeobox_KN,PBC
Max annot lvl33208|Metazoa
Evalue8.54e-09
EggNOG OGsKOG0774@1|root,KOG0774@2759|Eukaryota,39CMA@33154|Opisthokonta,3CGMP@33208|Metazoa,3DY3H@33213|Bilateria,40JCZ@6231|Nematoda,1M2Q7@119089|Chromadorea,40XUE@6236|Rhabditida
DescriptionHomeobox KN domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4515Ggra4515Gracilaria gracilis GNS1m malegenetig00000898_pilon 795148..796382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4515.t1Ggra4515.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 795148..796382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4515.t1.start1Ggra4515.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 795148..795150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4515.t1.CDS1Ggra4515.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 795148..795669 +
Ggra4515.t1.CDS2Ggra4515.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 796020..796382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4515.t1.exon1Ggra4515.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 795148..795669 +
Ggra4515.t1.exon2Ggra4515.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 796020..796382 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4515.t1.intron1Ggra4515.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 795670..796019 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4515.t1.stop1Ggra4515.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 796380..796382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4515.t1 ID=Ggra4515.t1|Name=Ggra4515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
LSCHLPPPAAVHYARERALPDFPPPHALQPYQPPPHMRVHLIHGLPHSLP
PAEHEPPLSHAMAQLFAVGDGTPHHVGGLKSHHALPSSGDLSAHGVGAPT
APSLFQPTVESALGAEYNSFALLATSIARHPSLVVVLKRVFAASGMYQFD
ADMQLAETLLSAERKCGSVGHCAEGVRGGLGLMGSSALRQALDTVCNRQR
MGVCGGAVGGGVGGHHNVWRDERHIQKGVGSERTPLSEKAKAALERWLHE
NLENPYPTIEQKLELARECSMSLNSVNNWFGNKRMKMFDSYCFV*
back to top

spliced messenger RNA

>Ggra4515.t1 ID=Ggra4515.t1|Name=Ggra4515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000898_pilon:795148..796382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAGCTGCCACCTCCCGCCGCCCGCCGCCGTGCACTACGCCAGAGAGCG
TGCGCTGCCCGACTTCCCGCCGCCGCATGCTCTACAGCCGTATCAGCCGC
CGCCGCATATGAGAGTGCACCTAATTCACGGACTGCCACACTCGTTGCCC
CCCGCTGAGCATGAGCCGCCGTTGTCCCATGCTATGGCGCAGCTTTTCGC
TGTGGGCGATGGCACCCCGCACCATGTTGGCGGCCTGAAGTCGCATCATG
CGCTGCCCAGCTCAGGTGATCTGTCAGCGCATGGCGTGGGCGCACCCACG
GCGCCGTCGTTGTTCCAACCGACGGTGGAGAGCGCGCTGGGCGCAGAGTA
CAACAGCTTCGCGTTGCTGGCTACCTCGATTGCAAGACACCCGAGTCTGG
TTGTGGTGTTGAAGCGGGTGTTTGCGGCCAGCGGCATGTATCAGTTTGAT
GCGGACATGCAGCTGGCCGAGACGCTGCTGAGTGCAGAGAGAAAGTGTGG
GTCGGTGGGACACTGCGCCGAAggCGTGCGCGGTGGTTTGGGGCTGATGG
GAAGCTCTGCACTGAGGCAGGCGTTGGATACGGTGTGCAATCGGCAGCGC
ATGGGAGTTTGCGGTGGCGCAGTGGGCGGTGGCGTCGGAGGCCACCACAA
TGTGTGGCGCGATGAGCGACACATTCAGAAAGGGGTGGGGTCTGAACGCA
CGCCGTTGTCTGAGAAGGCGAAGGCGGCGCTGGAACGATGGCTCCACGAG
AATCTGGAGAACCCGTACCCTACGATTGAGCAGAAGCTGGAGCTGGCGCG
CGAGTGCTCGATGAGTCTCAACTCGGTGAACAACTGGTTTGGGAACAAGA
GAATGAAAATGTTTGACTCATATTGCTTCGTTTAG
back to top

protein sequence of Ggra4515.t1

>Ggra4515.t1 ID=Ggra4515.t1|Name=Ggra4515.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
LSCHLPPPAAVHYARERALPDFPPPHALQPYQPPPHMRVHLIHGLPHSLP
PAEHEPPLSHAMAQLFAVGDGTPHHVGGLKSHHALPSSGDLSAHGVGAPT
APSLFQPTVESALGAEYNSFALLATSIARHPSLVVVLKRVFAASGMYQFD
ADMQLAETLLSAERKCGSVGHCAEGVRGGLGLMGSSALRQALDTVCNRQR
MGVCGGAVGGGVGGHHNVWRDERHIQKGVGSERTPLSEKAKAALERWLHE
NLENPYPTIEQKLELARECSMSLNSVNNWFGNKRMKMFDSYCFV*
back to top

mRNA from alignment at tig00000898_pilon:795148..796382+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4515.t1 ID=Ggra4515.t1|Name=Ggra4515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1235bp|location=Sequence derived from alignment at tig00000898_pilon:795148..796382+ (Gracilaria gracilis GNS1m male)
TTGAGCTGCCACCTCCCGCCGCCCGCCGCCGTGCACTACGCCAGAGAGCG
TGCGCTGCCCGACTTCCCGCCGCCGCATGCTCTACAGCCGTATCAGCCGC
CGCCGCATATGAGAGTGCACCTAATTCACGGACTGCCACACTCGTTGCCC
CCCGCTGAGCATGAGCCGCCGTTGTCCCATGCTATGGCGCAGCTTTTCGC
TGTGGGCGATGGCACCCCGCACCATGTTGGCGGCCTGAAGTCGCATCATG
CGCTGCCCAGCTCAGGTGATCTGTCAGCGCATGGCGTGGGCGCACCCACG
GCGCCGTCGTTGTTCCAACCGACGGTGGAGAGCGCGCTGGGCGCAGAGTA
CAACAGCTTCGCGTTGCTGGCTACCTCGATTGCAAGACACCCGAGTCTGG
TTGTGGTGTTGAAGCGGGTGTTTGCGGCCAGCGGCATGTATCAGTTTGAT
GCGGACATGCAGCTGGCCGAGACGCTGCTGAGTGCAGAGAGAAAGTGTGG
GTCGGTGGGACACTGCGCCGAAGTGAGTGGGCTACAACGCGCCGTAGCTC
AGTTCTCGGGCGTAAAGGTGTTTATGTTGGCGCTGGTGGCGGCGCTGTCG
AACGTctctatgaacatcgaatacggcccaaatatggccgagatatagcc
gaaatgtggccgtttaactcgaaaagttgtgagaacgtttagaaagcgga
tataaacaagtttcatttttcttcatatggcctaaatatggccgaagtgt
acacgtgtcagttggctaaagtacttattctccgtagttacacgttctct
gaaaatttcaagctaaacggccacatttcggccatatctcggccatattt
gggccatattcgaggtttatagggCGTGCGCGGTGGTTTGGGGCTGATGG
GAAGCTCTGCACTGAGGCAGGCGTTGGATACGGTGTGCAATCGGCAGCGC
ATGGGAGTTTGCGGTGGCGCAGTGGGCGGTGGCGTCGGAGGCCACCACAA
TGTGTGGCGCGATGAGCGACACATTCAGAAAGGGGTGGGGTCTGAACGCA
CGCCGTTGTCTGAGAAGGCGAAGGCGGCGCTGGAACGATGGCTCCACGAG
AATCTGGAGAACCCGTACCCTACGATTGAGCAGAAGCTGGAGCTGGCGCG
CGAGTGCTCGATGAGTCTCAACTCGGTGAACAACTGGTTTGGGAACAAGA
GAATGAAAATGTTTGACTCATATTGCTTCGTTTAG
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:795148..796382+

>Ggra4515.t1 ID=Ggra4515.t1|Name=Ggra4515.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000898_pilon:795148..796382+ (Gracilaria gracilis GNS1m male)
TTGAGCTGCCACCTCCCGCCGCCCGCCGCCGTGCACTACGCCAGAGAGCG
TGCGCTGCCCGACTTCCCGCCGCCGCATGCTCTACAGCCGTATCAGCCGC
CGCCGCATATGAGAGTGCACCTAATTCACGGACTGCCACACTCGTTGCCC
CCCGCTGAGCATGAGCCGCCGTTGTCCCATGCTATGGCGCAGCTTTTCGC
TGTGGGCGATGGCACCCCGCACCATGTTGGCGGCCTGAAGTCGCATCATG
CGCTGCCCAGCTCAGGTGATCTGTCAGCGCATGGCGTGGGCGCACCCACG
GCGCCGTCGTTGTTCCAACCGACGGTGGAGAGCGCGCTGGGCGCAGAGTA
CAACAGCTTCGCGTTGCTGGCTACCTCGATTGCAAGACACCCGAGTCTGG
TTGTGGTGTTGAAGCGGGTGTTTGCGGCCAGCGGCATGTATCAGTTTGAT
GCGGACATGCAGCTGGCCGAGACGCTGCTGAGTGCAGAGAGAAAGTGTGG
GTCGGTGGGACACTGCGCCGAAggCGTGCGCGGTGGTTTGGGGCTGATGG
GAAGCTCTGCACTGAGGCAGGCGTTGGATACGGTGTGCAATCGGCAGCGC
ATGGGAGTTTGCGGTGGCGCAGTGGGCGGTGGCGTCGGAGGCCACCACAA
TGTGTGGCGCGATGAGCGACACATTCAGAAAGGGGTGGGGTCTGAACGCA
CGCCGTTGTCTGAGAAGGCGAAGGCGGCGCTGGAACGATGGCTCCACGAG
AATCTGGAGAACCCGTACCCTACGATTGAGCAGAAGCTGGAGCTGGCGCG
CGAGTGCTCGATGAGTCTCAACTCGGTGAACAACTGGTTTGGGAACAAGA
GAATGAAAATGTTTGACTCATATTGCTTCGTTTAG
back to top