Ggra4460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4460.t1
Unique NameGgra4460.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length85
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:560804..561160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4460Ggra4460Gracilaria gracilis GNS1m malegenetig00000898_pilon 560804..561160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4460.t1Ggra4460.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 560804..561160 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4460.t1.start1Ggra4460.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 560804..560806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4460.t1.CDS1Ggra4460.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 560804..560962 +
Ggra4460.t1.CDS2Ggra4460.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 561065..561160 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4460.t1.exon1Ggra4460.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 560804..560962 +
Ggra4460.t1.exon2Ggra4460.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 561065..561160 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4460.t1.intron1Ggra4460.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 560963..561064 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4460.t1.stop1Ggra4460.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 561158..561160 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4460.t1 ID=Ggra4460.t1|Name=Ggra4460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=85bp
MSPVAVVQHFAPETLLLTQNITLRIFLGGMGIVASGVIGVVFVGYFVSRN
FDEVEREFQNRDRAVERLKALEELRERKERERQS*
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spliced messenger RNA

>Ggra4460.t1 ID=Ggra4460.t1|Name=Ggra4460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp|location=Sequence derived from alignment at tig00000898_pilon:560804..561160+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGGTAGCCGTTGTCCAACATTTTGCTCCTGAGACACTGTTGCT
AACGCAGAACATTACTTTGAGGATTTTCCTTGGCGGAATGGGCATTGTAG
CATCGGGTGTCATCGGTGTGGTTTTCGTTGGATATTTCGTATCCAGAAAC
TTTGATGAAGTGGAAAGAGAGTTTCAGAATCGTGATAGAGCTGTGGAAAG
ATTGAAAGCTCTAGAGGAGCTTAGAGAAAGGAAGGAAAGGGAGAGACAAT
CCTGA
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protein sequence of Ggra4460.t1

>Ggra4460.t1 ID=Ggra4460.t1|Name=Ggra4460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=85bp
MSPVAVVQHFAPETLLLTQNITLRIFLGGMGIVASGVIGVVFVGYFVSRN
FDEVEREFQNRDRAVERLKALEELRERKERERQS*
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mRNA from alignment at tig00000898_pilon:560804..561160+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4460.t1 ID=Ggra4460.t1|Name=Ggra4460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000898_pilon:560804..561160+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGGTAGCCGTTGTCCAACATTTTGCTCCTGAGACACTGTTGCT
AACGCAGAACATTACTTTGAGGATTTTCCTTGGCGGAATGGGCATTGTAG
CATCGGGTGTCATCGGTGTGGTTTTCGTTGGATATTTCGTATCCAGAAAC
TTTGATGAAGTAGGTTAACATAGAGACCCTCATATTCTGGAGTCCACATT
TTACTGACTGGTTTGTTCGCTTTCCTGCATGTCTTTGGGACTAATTGTTC
GTTTCACATAGGTGGAAAGAGAGTTTCAGAATCGTGATAGAGCTGTGGAA
AGATTGAAAGCTCTAGAGGAGCTTAGAGAAAGGAAGGAAAGGGAGAGACA
ATCCTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:560804..561160+

>Ggra4460.t1 ID=Ggra4460.t1|Name=Ggra4460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=255bp|location=Sequence derived from alignment at tig00000898_pilon:560804..561160+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGGTAGCCGTTGTCCAACATTTTGCTCCTGAGACACTGTTGCT
AACGCAGAACATTACTTTGAGGATTTTCCTTGGCGGAATGGGCATTGTAG
CATCGGGTGTCATCGGTGTGGTTTTCGTTGGATATTTCGTATCCAGAAAC
TTTGATGAAGTGGAAAGAGAGTTTCAGAATCGTGATAGAGCTGTGGAAAG
ATTGAAAGCTCTAGAGGAGCTTAGAGAAAGGAAGGAAAGGGAGAGACAAT
CCTGA
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