Ggra4411.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4411.t1
Unique NameGgra4411.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:340156..341295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708391.1
Preferred nameTIMM50
PFAMsNIF
Max annot lvl2759|Eukaryota
KEGG koko:K17496
KEGG TC3.A.8.1
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
Evalue1.75e-68
EggNOG OGsCOG5190@1|root,KOG2832@2759|Eukaryota
Descriptionprotein import into mitochondrial matrix
COG categoryK
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4411Ggra4411Gracilaria gracilis GNS1m malegenetig00000898_pilon 340156..341295 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4411.t1.start1Ggra4411.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 340156..340158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4411.t1.CDS1Ggra4411.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 340156..341295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4411.t1.exon1Ggra4411.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 340156..341295 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4411.t1.stop1Ggra4411.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 341293..341295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4411.t1Ggra4411.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 340156..341295 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4411.t1 ID=Ggra4411.t1|Name=Ggra4411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MQRASSRSLRSTPLVLTRVSHSLLKRRAQQAAAQHRQQRAHTTHEHTPQQ
QQQQQQQQQQQQQQQHSSRWTLRNVVLASGIAAMVGVSAAPQTRSDVADA
LQRTKHDVEQRINFFTKPSRDKLLPDLPKHAAHVRTLVIDLEHTLVHCSY
SRARGWRIAKRPGAEAFLAYMASFYEVVVFTSNLHSFADPILDKLDPNGY
INHRLYRHETHYQHGVHIKDVSALNRDLSRVIVIDHDEKHTSLQPDNAII
IPKWTGDTSDTTLLDLIPMLESLVRSDVADVREHIAILKGKPVAEGVAEY
RAMENVNVNTPRSTAGSLFGRSCGADAPLPLPPQDGGGGDGDGELAHDGA
KRPSGTVWGSLSGSGMFSRSSHSAGDDKR*
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spliced messenger RNA

>Ggra4411.t1 ID=Ggra4411.t1|Name=Ggra4411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000898_pilon:340156..341295+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCGCAAGCAGCCGCTCGCTGCGGTCCACGCCGCTGGTGCTCAC
GCGCGTCTCGCACTCGCTGCTGAAGCGGCGCGCGCAGCAGGCGGCCGCAC
AGCACCGCCAACAGCGCGCGCACACCACGCACGAGCACACCCCgcagcag
cagcagcagcaacagcagcagcaacagcagcaacagcagcagcagcaCTC
GTCCAGATGGACGCTGCGTAACGTCGTGCTGGCGTCGGGTATCGCCGCCA
TGGTGGGCGTGAGCGCCGCGCCGCAGACGCGATCGGACGTTGCAGACGCG
CTGCAGCGCACCAAGCACGATGTTGAGCAGCGCATCAACTTCTTCACCAA
GCCGTCGCGCGACAAGCTGCTGCCGGACCTGCCCAAGCACGCCGCGCACG
TTCGTACCTTGGTCATTGACTTGGAGCATACTCTGGTGCACTGTTCGTAC
TCAAGGGCGCGCGGGTGGCGCATTGCAAAGCGGCCGGGCGCGGAGGCGTT
CCTGGCGTATATGGCGTCGTTCTATGAGGTGGTGGTGTTCACCAGTAACT
TGCATTCGTTTGCAGATCCCATCTTGGACAAGCTCGATCCCAACGGCTAC
ATAAACCACCGCTTGTACCGACACGAGACACACTACCAACACGGCGTGCA
CATCAAGGACGTGAGCGCGTTGAACCGTGACTTGTCGCGCGTGATCGTCA
TCGACCACGATGAAAAACACACCAGTCTGCAGCCGGACAACGCCATCATC
ATCCCGAAATGGACGGGCGACACATCTGATACCACGCTGCTCGACCTCAT
CCCCATGCTGGAGAGCCTGGTGCGCAGTGACGTGGCGGATGTGAGGGAGC
ACATAGCCATTCTGAAGGGAAAGCCCGTCGCGGAGGGCGTTGCCGAGTAT
AGAGCGATGGAAAACGTGAATGTGAATACACCCAGATCCACGGCGGGCTC
GCTGTTCGGGCGCTCGTGTggcgcggatgcgccgctgccgctgccgccgc
aggatggcggcggcggcgacggcgacggcgagctggcgCATGACGGCGCC
AAGCGGCCGTCCGGCACCGTGTGGGGCTCTCTTTCCGGCAGTGGTATGTT
CTCACGCTCCTCGCATTCTGCGGGTGACGATAAACGATGA
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protein sequence of Ggra4411.t1

>Ggra4411.t1 ID=Ggra4411.t1|Name=Ggra4411.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MQRASSRSLRSTPLVLTRVSHSLLKRRAQQAAAQHRQQRAHTTHEHTPQQ
QQQQQQQQQQQQQQQHSSRWTLRNVVLASGIAAMVGVSAAPQTRSDVADA
LQRTKHDVEQRINFFTKPSRDKLLPDLPKHAAHVRTLVIDLEHTLVHCSY
SRARGWRIAKRPGAEAFLAYMASFYEVVVFTSNLHSFADPILDKLDPNGY
INHRLYRHETHYQHGVHIKDVSALNRDLSRVIVIDHDEKHTSLQPDNAII
IPKWTGDTSDTTLLDLIPMLESLVRSDVADVREHIAILKGKPVAEGVAEY
RAMENVNVNTPRSTAGSLFGRSCGADAPLPLPPQDGGGGDGDGELAHDGA
KRPSGTVWGSLSGSGMFSRSSHSAGDDKR*
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mRNA from alignment at tig00000898_pilon:340156..341295+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4411.t1 ID=Ggra4411.t1|Name=Ggra4411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000898_pilon:340156..341295+ (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCAAGCAGCCGCTCGCTGCGGTCCACGCCGCTGGTGCTCAC
GCGCGTCTCGCACTCGCTGCTGAAGCGGCGCGCGCAGCAGGCGGCCGCAC
AGCACCGCCAACAGCGCGCGCACACCACGCACGAGCACACCCCgcagcag
cagcagcagcaacagcagcagcaacagcagcaacagcagcagcagcaCTC
GTCCAGATGGACGCTGCGTAACGTCGTGCTGGCGTCGGGTATCGCCGCCA
TGGTGGGCGTGAGCGCCGCGCCGCAGACGCGATCGGACGTTGCAGACGCG
CTGCAGCGCACCAAGCACGATGTTGAGCAGCGCATCAACTTCTTCACCAA
GCCGTCGCGCGACAAGCTGCTGCCGGACCTGCCCAAGCACGCCGCGCACG
TTCGTACCTTGGTCATTGACTTGGAGCATACTCTGGTGCACTGTTCGTAC
TCAAGGGCGCGCGGGTGGCGCATTGCAAAGCGGCCGGGCGCGGAGGCGTT
CCTGGCGTATATGGCGTCGTTCTATGAGGTGGTGGTGTTCACCAGTAACT
TGCATTCGTTTGCAGATCCCATCTTGGACAAGCTCGATCCCAACGGCTAC
ATAAACCACCGCTTGTACCGACACGAGACACACTACCAACACGGCGTGCA
CATCAAGGACGTGAGCGCGTTGAACCGTGACTTGTCGCGCGTGATCGTCA
TCGACCACGATGAAAAACACACCAGTCTGCAGCCGGACAACGCCATCATC
ATCCCGAAATGGACGGGCGACACATCTGATACCACGCTGCTCGACCTCAT
CCCCATGCTGGAGAGCCTGGTGCGCAGTGACGTGGCGGATGTGAGGGAGC
ACATAGCCATTCTGAAGGGAAAGCCCGTCGCGGAGGGCGTTGCCGAGTAT
AGAGCGATGGAAAACGTGAATGTGAATACACCCAGATCCACGGCGGGCTC
GCTGTTCGGGCGCTCGTGTggcgcggatgcgccgctgccgctgccgccgc
aggatggcggcggcggcgacggcgacggcgagctggcgCATGACGGCGCC
AAGCGGCCGTCCGGCACCGTGTGGGGCTCTCTTTCCGGCAGTGGTATGTT
CTCACGCTCCTCGCATTCTGCGGGTGACGATAAACGATGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:340156..341295+

>Ggra4411.t1 ID=Ggra4411.t1|Name=Ggra4411.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000898_pilon:340156..341295+ (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCAAGCAGCCGCTCGCTGCGGTCCACGCCGCTGGTGCTCAC
GCGCGTCTCGCACTCGCTGCTGAAGCGGCGCGCGCAGCAGGCGGCCGCAC
AGCACCGCCAACAGCGCGCGCACACCACGCACGAGCACACCCCgcagcag
cagcagcagcaacagcagcagcaacagcagcaacagcagcagcagcaCTC
GTCCAGATGGACGCTGCGTAACGTCGTGCTGGCGTCGGGTATCGCCGCCA
TGGTGGGCGTGAGCGCCGCGCCGCAGACGCGATCGGACGTTGCAGACGCG
CTGCAGCGCACCAAGCACGATGTTGAGCAGCGCATCAACTTCTTCACCAA
GCCGTCGCGCGACAAGCTGCTGCCGGACCTGCCCAAGCACGCCGCGCACG
TTCGTACCTTGGTCATTGACTTGGAGCATACTCTGGTGCACTGTTCGTAC
TCAAGGGCGCGCGGGTGGCGCATTGCAAAGCGGCCGGGCGCGGAGGCGTT
CCTGGCGTATATGGCGTCGTTCTATGAGGTGGTGGTGTTCACCAGTAACT
TGCATTCGTTTGCAGATCCCATCTTGGACAAGCTCGATCCCAACGGCTAC
ATAAACCACCGCTTGTACCGACACGAGACACACTACCAACACGGCGTGCA
CATCAAGGACGTGAGCGCGTTGAACCGTGACTTGTCGCGCGTGATCGTCA
TCGACCACGATGAAAAACACACCAGTCTGCAGCCGGACAACGCCATCATC
ATCCCGAAATGGACGGGCGACACATCTGATACCACGCTGCTCGACCTCAT
CCCCATGCTGGAGAGCCTGGTGCGCAGTGACGTGGCGGATGTGAGGGAGC
ACATAGCCATTCTGAAGGGAAAGCCCGTCGCGGAGGGCGTTGCCGAGTAT
AGAGCGATGGAAAACGTGAATGTGAATACACCCAGATCCACGGCGGGCTC
GCTGTTCGGGCGCTCGTGTggcgcggatgcgccgctgccgctgccgccgc
aggatggcggcggcggcgacggcgacggcgagctggcgCATGACGGCGCC
AAGCGGCCGTCCGGCACCGTGTGGGGCTCTCTTTCCGGCAGTGGTATGTT
CTCACGCTCCTCGCATTCTGCGGGTGACGATAAACGATGA
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