Ggra4352.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4352.t1
Unique NameGgra4352.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:24254..25099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog331113.SNE_A18750
Preferred nameCP_0176
PFAMsTranscrip_reg
Max annot lvl204428|Chlamydiae
Evalue3.38e-51
EggNOG OGsCOG0217@1|root,COG0217@2|Bacteria,2JFMK@204428|Chlamydiae
DescriptionTranscriptional Regulatory Protein
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4352Ggra4352Gracilaria gracilis GNS1m malegenetig00000898_pilon 24254..25099 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4352.t1.start1Ggra4352.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 24254..24256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4352.t1.CDS1Ggra4352.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 24254..25099 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4352.t1.exon1Ggra4352.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 24254..25099 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4352.t1.stop1Ggra4352.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 25097..25099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4352.t1Ggra4352.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 24254..25099 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4352.t1 ID=Ggra4352.t1|Name=Ggra4352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MEATRGNSTAFAPSALSAFTRPCQSRFARKCSRTPPKHVYMGRRSEKIKG
RKDAQSQAKAKVFARVGKMITMAAKQGGPDVVANRALADAIEAAKRVSFP
KDTMEKAIARATSPDQADYKRSSFEAYGHGGAAIYIDVLTDNPNRAAADI
RTAINKSKFKIASPGSVAFNFERMGKIHVPKNSVPDEDELFMAAVDAGAE
ECEVDPDDESMYRILTDAASLFDAQKGLEGAGVHIELAQLAMVPKTVVSV
SEEDMEKNMDGIDMIQAVEDVDDVFINATLE*
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spliced messenger RNA

>Ggra4352.t1 ID=Ggra4352.t1|Name=Ggra4352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000898_pilon:24254..25099+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAACTCGAGGCAACTCCACCGCTTTCGCGCCGTCCGCGCTGTC
CGCATTCACTCGCCCATGTCAATCACGTTTTGCGCGCAAGTGCTCTCGCA
CGCCACCCAAACATGTATACATGGGGCGCCGCAGCGAGAAAATTAAGGGT
CGTAAAGATGCTCAGTCACAAGCAAAGGCAAAGGTGTTTGCCAGAGTGGG
AAAGATGATTACAATGGCTGCCAAGCAGGGGGGTCCAGATGTCGTTGCAA
ACAGAGCTCTTGCAGACGCGATAGAAGCCGCCAAAAGAGTAAGCTTTCCG
AAGGACACAATGGAAAAGGCTATTGCTCGAGCCACCAGCCCTGATCAAGC
GGACTACAAAAGAAGTTCTTTCGAAGCGTATGGTCACGGTGGAGCTGCCA
TTTACATTGATGTTCTAACTGATAACCCAAATCGCGCCGCCGCCGATATT
CGAACCGCGATTAACAAAAGCAAGTTCAAGATAGCTTCTCCAGGAAGCGT
AGCATTCAATTTTGAGCGTATGGGAAAGATTCATGTGCCGAAGAATTCCG
TTCCAGATGAAGATGAGCTTTTCATGGCTGCAGTGGATGCGGGCGCTGAG
GAATGCGAGGTAGATCCAGATGATGAGTCTATGTATCGTATTCTCACCGA
TGCTGCCTCTCTATTTGACGCTCAGAAAGGATTAGAGGGGGCCGGTGTTC
ATATTGAACTAGCACAGCTTGCTATGGTACCAAAGACCGTAGTAAGTGTG
TCAGAAGAGGATATGGAGAAGAACATGGACGGTATTGATATGATTCAAGC
TGTAGAAGACGTTGACGATGTGTTTATTAATGCCACTCTGGAGTAG
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protein sequence of Ggra4352.t1

>Ggra4352.t1 ID=Ggra4352.t1|Name=Ggra4352.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MEATRGNSTAFAPSALSAFTRPCQSRFARKCSRTPPKHVYMGRRSEKIKG
RKDAQSQAKAKVFARVGKMITMAAKQGGPDVVANRALADAIEAAKRVSFP
KDTMEKAIARATSPDQADYKRSSFEAYGHGGAAIYIDVLTDNPNRAAADI
RTAINKSKFKIASPGSVAFNFERMGKIHVPKNSVPDEDELFMAAVDAGAE
ECEVDPDDESMYRILTDAASLFDAQKGLEGAGVHIELAQLAMVPKTVVSV
SEEDMEKNMDGIDMIQAVEDVDDVFINATLE*
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mRNA from alignment at tig00000898_pilon:24254..25099+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4352.t1 ID=Ggra4352.t1|Name=Ggra4352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000898_pilon:24254..25099+ (Gracilaria gracilis GNS1m male)
ATGGAAGCAACTCGAGGCAACTCCACCGCTTTCGCGCCGTCCGCGCTGTC
CGCATTCACTCGCCCATGTCAATCACGTTTTGCGCGCAAGTGCTCTCGCA
CGCCACCCAAACATGTATACATGGGGCGCCGCAGCGAGAAAATTAAGGGT
CGTAAAGATGCTCAGTCACAAGCAAAGGCAAAGGTGTTTGCCAGAGTGGG
AAAGATGATTACAATGGCTGCCAAGCAGGGGGGTCCAGATGTCGTTGCAA
ACAGAGCTCTTGCAGACGCGATAGAAGCCGCCAAAAGAGTAAGCTTTCCG
AAGGACACAATGGAAAAGGCTATTGCTCGAGCCACCAGCCCTGATCAAGC
GGACTACAAAAGAAGTTCTTTCGAAGCGTATGGTCACGGTGGAGCTGCCA
TTTACATTGATGTTCTAACTGATAACCCAAATCGCGCCGCCGCCGATATT
CGAACCGCGATTAACAAAAGCAAGTTCAAGATAGCTTCTCCAGGAAGCGT
AGCATTCAATTTTGAGCGTATGGGAAAGATTCATGTGCCGAAGAATTCCG
TTCCAGATGAAGATGAGCTTTTCATGGCTGCAGTGGATGCGGGCGCTGAG
GAATGCGAGGTAGATCCAGATGATGAGTCTATGTATCGTATTCTCACCGA
TGCTGCCTCTCTATTTGACGCTCAGAAAGGATTAGAGGGGGCCGGTGTTC
ATATTGAACTAGCACAGCTTGCTATGGTACCAAAGACCGTAGTAAGTGTG
TCAGAAGAGGATATGGAGAAGAACATGGACGGTATTGATATGATTCAAGC
TGTAGAAGACGTTGACGATGTGTTTATTAATGCCACTCTGGAGTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:24254..25099+

>Ggra4352.t1 ID=Ggra4352.t1|Name=Ggra4352.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000898_pilon:24254..25099+ (Gracilaria gracilis GNS1m male)
ATGGAAGCAACTCGAGGCAACTCCACCGCTTTCGCGCCGTCCGCGCTGTC
CGCATTCACTCGCCCATGTCAATCACGTTTTGCGCGCAAGTGCTCTCGCA
CGCCACCCAAACATGTATACATGGGGCGCCGCAGCGAGAAAATTAAGGGT
CGTAAAGATGCTCAGTCACAAGCAAAGGCAAAGGTGTTTGCCAGAGTGGG
AAAGATGATTACAATGGCTGCCAAGCAGGGGGGTCCAGATGTCGTTGCAA
ACAGAGCTCTTGCAGACGCGATAGAAGCCGCCAAAAGAGTAAGCTTTCCG
AAGGACACAATGGAAAAGGCTATTGCTCGAGCCACCAGCCCTGATCAAGC
GGACTACAAAAGAAGTTCTTTCGAAGCGTATGGTCACGGTGGAGCTGCCA
TTTACATTGATGTTCTAACTGATAACCCAAATCGCGCCGCCGCCGATATT
CGAACCGCGATTAACAAAAGCAAGTTCAAGATAGCTTCTCCAGGAAGCGT
AGCATTCAATTTTGAGCGTATGGGAAAGATTCATGTGCCGAAGAATTCCG
TTCCAGATGAAGATGAGCTTTTCATGGCTGCAGTGGATGCGGGCGCTGAG
GAATGCGAGGTAGATCCAGATGATGAGTCTATGTATCGTATTCTCACCGA
TGCTGCCTCTCTATTTGACGCTCAGAAAGGATTAGAGGGGGCCGGTGTTC
ATATTGAACTAGCACAGCTTGCTATGGTACCAAAGACCGTAGTAAGTGTG
TCAGAAGAGGATATGGAGAAGAACATGGACGGTATTGATATGATTCAAGC
TGTAGAAGACGTTGACGATGTGTTTATTAATGCCACTCTGGAGTAG
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