Ggra4344.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4344.t1
Unique NameGgra4344.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:10827..11765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4344Ggra4344Gracilaria gracilis GNS1m malegenetig00000898_pilon 10827..11765 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4344.t1.stop1Ggra4344.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 10827..10829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4344.t1.CDS1Ggra4344.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 10827..11765 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4344.t1.exon1Ggra4344.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 10827..11765 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4344.t1.start1Ggra4344.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 11763..11765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4344.t1Ggra4344.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 10827..11765 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4344.t1 ID=Ggra4344.t1|Name=Ggra4344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MVLVVLSILEIIDLPTNVCTARKEAHQKLISSLSYAEDLHLLQSDSSQYL
RIAWLPESRNCRPLSIPYSRIEFGTAASPLQNVLLYVTSVIGATKKVFIE
IDSSRASGQMLAGNILTQRGWSGIVMHERWSAYESCRTHYEQVQKSLSSI
EARVEVVDAGPIEDIERLNSLLNTAEGAGIVDIMMIFTGGGRDINILSKM
QSSIARPRILALFYQAYWGMMDRSRIGDGVADESGRERLFTGASLPALVR
LAAKSRYRLIWCLRTEPIAIFIREEEQHGIRTIPPNSCMSLSPEWRRDAE
AMWDLAQQYEWT*
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spliced messenger RNA

>Ggra4344.t1 ID=Ggra4344.t1|Name=Ggra4344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000898_pilon:10827..11765- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTTGTTGTGCTTTCAATCTTGGAAATTATTGATCTTCCTACGAA
CGTTTGCACGGCGCGGAAGGAAGCTCATCAGAAGTTAATTTCTAGCTTAA
GCTACGCCGAAGATCTTCACCTACTTCAGTCAGACTCTTCCCAGTATCTC
AGAATCGCATGGCTACCAGAAAGTCGGAATTGCAGACCTCTGAGCATTCC
ATACTCTCGTATAGAGTTTGGCACGGCAGCGTCCCCGCTACAGAATGTAC
TGCTCTACGTCACTTCCGTTATTGGCGCGACGAAGAAGGTCTTTATCGAA
ATTGACTCTTCAAGAGCGAGCGGCCAAATGCTCGCTGGCAACATTTTGAC
GCAGCGTGGATGGTCAGGTATTGTGATGCACGAAAGATGGAGTGCCTATG
AATCATGCCGTACGCATTATGAACAAGTTCAGAAGTCACTGTCAAGCATT
GAAGCACGAGTGGAAGTAGTTGATGCTGGACCTATAGAGGACATTGAACG
TTTGAATTCTCTTCTAAATACTGCGGAAGGAGCCGGCATCGTAGATATAA
TGATGATCTTTACGGGCGGTGGGAGAGATATCAATATACTTTCAAAAATG
CAGTCATCTATCGCACGCCCAAGAATTCTGGCACTGTTCTATCAAGCTTA
CTGGGGCATGATGGATAGGAGCCGTATTGGAGACGGAGTTGCGGATGAAA
GCGGACGTGAACGGCTGTTCACCGGCGCAAGCCTTCCAGCTCTTGTTCGT
CTTGCTGCCAAAAGTCGATATAGATTAATATGGTGTTTACGTACTGAACC
GATAGCCATCTTCATTCGGGAGGAAGAGCAACACGGGATTCGCACTATTC
CCCCCAACTCATGTATGTCACTATCCCCGGAATGGAGACGTGACGCAGAA
GCTATGTGGGATCTCGCGCAACAATACGAATGGACGTGA
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protein sequence of Ggra4344.t1

>Ggra4344.t1 ID=Ggra4344.t1|Name=Ggra4344.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MVLVVLSILEIIDLPTNVCTARKEAHQKLISSLSYAEDLHLLQSDSSQYL
RIAWLPESRNCRPLSIPYSRIEFGTAASPLQNVLLYVTSVIGATKKVFIE
IDSSRASGQMLAGNILTQRGWSGIVMHERWSAYESCRTHYEQVQKSLSSI
EARVEVVDAGPIEDIERLNSLLNTAEGAGIVDIMMIFTGGGRDINILSKM
QSSIARPRILALFYQAYWGMMDRSRIGDGVADESGRERLFTGASLPALVR
LAAKSRYRLIWCLRTEPIAIFIREEEQHGIRTIPPNSCMSLSPEWRRDAE
AMWDLAQQYEWT*
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mRNA from alignment at tig00000898_pilon:10827..11765-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4344.t1 ID=Ggra4344.t1|Name=Ggra4344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000898_pilon:10827..11765- (Gracilaria gracilis GNS1m male)
ATGGTTCTTGTTGTGCTTTCAATCTTGGAAATTATTGATCTTCCTACGAA
CGTTTGCACGGCGCGGAAGGAAGCTCATCAGAAGTTAATTTCTAGCTTAA
GCTACGCCGAAGATCTTCACCTACTTCAGTCAGACTCTTCCCAGTATCTC
AGAATCGCATGGCTACCAGAAAGTCGGAATTGCAGACCTCTGAGCATTCC
ATACTCTCGTATAGAGTTTGGCACGGCAGCGTCCCCGCTACAGAATGTAC
TGCTCTACGTCACTTCCGTTATTGGCGCGACGAAGAAGGTCTTTATCGAA
ATTGACTCTTCAAGAGCGAGCGGCCAAATGCTCGCTGGCAACATTTTGAC
GCAGCGTGGATGGTCAGGTATTGTGATGCACGAAAGATGGAGTGCCTATG
AATCATGCCGTACGCATTATGAACAAGTTCAGAAGTCACTGTCAAGCATT
GAAGCACGAGTGGAAGTAGTTGATGCTGGACCTATAGAGGACATTGAACG
TTTGAATTCTCTTCTAAATACTGCGGAAGGAGCCGGCATCGTAGATATAA
TGATGATCTTTACGGGCGGTGGGAGAGATATCAATATACTTTCAAAAATG
CAGTCATCTATCGCACGCCCAAGAATTCTGGCACTGTTCTATCAAGCTTA
CTGGGGCATGATGGATAGGAGCCGTATTGGAGACGGAGTTGCGGATGAAA
GCGGACGTGAACGGCTGTTCACCGGCGCAAGCCTTCCAGCTCTTGTTCGT
CTTGCTGCCAAAAGTCGATATAGATTAATATGGTGTTTACGTACTGAACC
GATAGCCATCTTCATTCGGGAGGAAGAGCAACACGGGATTCGCACTATTC
CCCCCAACTCATGTATGTCACTATCCCCGGAATGGAGACGTGACGCAGAA
GCTATGTGGGATCTCGCGCAACAATACGAATGGACGTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:10827..11765-

>Ggra4344.t1 ID=Ggra4344.t1|Name=Ggra4344.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000898_pilon:10827..11765- (Gracilaria gracilis GNS1m male)
ATGGTTCTTGTTGTGCTTTCAATCTTGGAAATTATTGATCTTCCTACGAA
CGTTTGCACGGCGCGGAAGGAAGCTCATCAGAAGTTAATTTCTAGCTTAA
GCTACGCCGAAGATCTTCACCTACTTCAGTCAGACTCTTCCCAGTATCTC
AGAATCGCATGGCTACCAGAAAGTCGGAATTGCAGACCTCTGAGCATTCC
ATACTCTCGTATAGAGTTTGGCACGGCAGCGTCCCCGCTACAGAATGTAC
TGCTCTACGTCACTTCCGTTATTGGCGCGACGAAGAAGGTCTTTATCGAA
ATTGACTCTTCAAGAGCGAGCGGCCAAATGCTCGCTGGCAACATTTTGAC
GCAGCGTGGATGGTCAGGTATTGTGATGCACGAAAGATGGAGTGCCTATG
AATCATGCCGTACGCATTATGAACAAGTTCAGAAGTCACTGTCAAGCATT
GAAGCACGAGTGGAAGTAGTTGATGCTGGACCTATAGAGGACATTGAACG
TTTGAATTCTCTTCTAAATACTGCGGAAGGAGCCGGCATCGTAGATATAA
TGATGATCTTTACGGGCGGTGGGAGAGATATCAATATACTTTCAAAAATG
CAGTCATCTATCGCACGCCCAAGAATTCTGGCACTGTTCTATCAAGCTTA
CTGGGGCATGATGGATAGGAGCCGTATTGGAGACGGAGTTGCGGATGAAA
GCGGACGTGAACGGCTGTTCACCGGCGCAAGCCTTCCAGCTCTTGTTCGT
CTTGCTGCCAAAAGTCGATATAGATTAATATGGTGTTTACGTACTGAACC
GATAGCCATCTTCATTCGGGAGGAAGAGCAACACGGGATTCGCACTATTC
CCCCCAACTCATGTATGTCACTATCCCCGGAATGGAGACGTGACGCAGAA
GCTATGTGGGATCTCGCGCAACAATACGAATGGACGTGA
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