Ggra4296.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4296.t1
Unique NameGgra4296.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:261729..262520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1006004.GBAG_2372
Preferred nameotsB
PFAMsTrehalose_PPase
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00017
KEGG koko:K01087
KEGG ReactionR02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004805,GO:0005488,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0033554,GO:0034637,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0046872,GO:0050896,GO:0051716,GO:0070413,GO:0070415,GO:0070417,GO:0071704,GO:1901576
Evalue5.91e-12
EggNOG OGsCOG1877@1|root,COG1877@2|Bacteria,1RGY2@1224|Proteobacteria,1RNIQ@1236|Gammaproteobacteria
EC3.1.3.12
DescriptionRemoves the phosphate from trehalose 6-phosphate to produce free trehalose
COG categoryG
BiGG ReactioniE2348C_1286.E2348C_2018,iECED1_1282.ECED1_2163,iECIAI39_1322.ECIAI39_1155,iECS88_1305.ECS88_1952,iLF82_1304.LF82_1582,iNRG857_1313.NRG857_09495
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4296Ggra4296Gracilaria gracilis GNS1m malegenetig00000022_pilon 261729..262520 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4296.t1.start1Ggra4296.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 261729..261731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4296.t1.CDS1Ggra4296.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 261729..262520 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4296.t1.exon1Ggra4296.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 261729..262520 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4296.t1.stop1Ggra4296.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 262518..262520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4296.t1Ggra4296.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 261729..262520 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4296.t1 ID=Ggra4296.t1|Name=Ggra4296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MASITAARPPPKPAPPTLLRTLAARHRSLALLFDVDKTTCDTRQFQGGTP
KIRAGIQTACQTLYAGGHAIAFISGRTEHRLRNATGDSFPLAARHGRTLV
LSSREVVRLGPPVDLSAEIRAAEAFAHSLNVTCWNDGDTVEIGFQGRECL
KPVVEIFMRHLVQRRPQELQLLPLKKVTEIIPCGVGKGVALDYFMDNDPR
FSDSFVMYFGDDLNDIPAGRAAQRRGGLLVWVGDVAAAVDAAADYYVADP
AAVEHLLVQLCND*
back to top

spliced messenger RNA

>Ggra4296.t1 ID=Ggra4296.t1|Name=Ggra4296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000022_pilon:261729..262520+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCATCACCGCCGCGCGCCCGCCCCCGAAGCCGGCGCCCCCCAC
CCTCCTTCGAACCCTCGCGGCTCGCCATCGCTCTCTCGCGCTCCTCTTCG
ACGTCGACAAGACCACGTGCGACACGCGCCAATTCCAAGGCGGCACCCCG
AAGATCCGCGCCGGCATCCAAACCGCGTGCCAAACGCTGTACGCCGGCGG
CCACGCAATCGCCTTCATCTCCGGCCGCACCGAGCACCGCCTGCGAAACG
CCACCGGCGACAGCTTCCCGCTCGCGGCGCGGCACGGCCGCACGTTGGTG
CTGTCGTCGCGCGAGGTGGTGCGCCTGGGCCCGCCCGTCGATCTCAGCGC
GGAGATCCGCGCCGCGGAGGCGTTTGCACACTCGCTCAATGTGACGTGCT
GGAATGACGGCGACACCGTGGAGATTGGCTTTCAGGGACGCGAGTGTTTG
AAACCGGTGGTGGAGATTTTCATGCGCCATTTGGTGCAACGGCGCCCGCA
GGAGCTGCAGTTGCTGCCGTTGAAGAAGGTCACGGAGATTATCCCTTGTG
GCGTGGGAAAAGGCGTGGCGTTGGATTACTTCATGGACAATGACCCTAGG
TTTAGTGATAGTTTTGTAATGTACTTTGGCGATGATTTGAATGATATTCC
GGCGGGCAGGGCGGCGCAGAGGCGCGGAGGGCTGCTGGTTTGGGTTGGTG
ATGTTGCTGCCGCTGTTGATGCGGCGGCCGACTACTACGTTGCCGACCCT
GCTGCTGTGGAACACTTGCTAGTACAGCTGTGCAATGATTGA
back to top

protein sequence of Ggra4296.t1

>Ggra4296.t1 ID=Ggra4296.t1|Name=Ggra4296.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MASITAARPPPKPAPPTLLRTLAARHRSLALLFDVDKTTCDTRQFQGGTP
KIRAGIQTACQTLYAGGHAIAFISGRTEHRLRNATGDSFPLAARHGRTLV
LSSREVVRLGPPVDLSAEIRAAEAFAHSLNVTCWNDGDTVEIGFQGRECL
KPVVEIFMRHLVQRRPQELQLLPLKKVTEIIPCGVGKGVALDYFMDNDPR
FSDSFVMYFGDDLNDIPAGRAAQRRGGLLVWVGDVAAAVDAAADYYVADP
AAVEHLLVQLCND*
back to top

mRNA from alignment at tig00000022_pilon:261729..262520+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4296.t1 ID=Ggra4296.t1|Name=Ggra4296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000022_pilon:261729..262520+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCATCACCGCCGCGCGCCCGCCCCCGAAGCCGGCGCCCCCCAC
CCTCCTTCGAACCCTCGCGGCTCGCCATCGCTCTCTCGCGCTCCTCTTCG
ACGTCGACAAGACCACGTGCGACACGCGCCAATTCCAAGGCGGCACCCCG
AAGATCCGCGCCGGCATCCAAACCGCGTGCCAAACGCTGTACGCCGGCGG
CCACGCAATCGCCTTCATCTCCGGCCGCACCGAGCACCGCCTGCGAAACG
CCACCGGCGACAGCTTCCCGCTCGCGGCGCGGCACGGCCGCACGTTGGTG
CTGTCGTCGCGCGAGGTGGTGCGCCTGGGCCCGCCCGTCGATCTCAGCGC
GGAGATCCGCGCCGCGGAGGCGTTTGCACACTCGCTCAATGTGACGTGCT
GGAATGACGGCGACACCGTGGAGATTGGCTTTCAGGGACGCGAGTGTTTG
AAACCGGTGGTGGAGATTTTCATGCGCCATTTGGTGCAACGGCGCCCGCA
GGAGCTGCAGTTGCTGCCGTTGAAGAAGGTCACGGAGATTATCCCTTGTG
GCGTGGGAAAAGGCGTGGCGTTGGATTACTTCATGGACAATGACCCTAGG
TTTAGTGATAGTTTTGTAATGTACTTTGGCGATGATTTGAATGATATTCC
GGCGGGCAGGGCGGCGCAGAGGCGCGGAGGGCTGCTGGTTTGGGTTGGTG
ATGTTGCTGCCGCTGTTGATGCGGCGGCCGACTACTACGTTGCCGACCCT
GCTGCTGTGGAACACTTGCTAGTACAGCTGTGCAATGATTGA
back to top

Coding sequence (CDS) from alignment at tig00000022_pilon:261729..262520+

>Ggra4296.t1 ID=Ggra4296.t1|Name=Ggra4296.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000022_pilon:261729..262520+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCATCACCGCCGCGCGCCCGCCCCCGAAGCCGGCGCCCCCCAC
CCTCCTTCGAACCCTCGCGGCTCGCCATCGCTCTCTCGCGCTCCTCTTCG
ACGTCGACAAGACCACGTGCGACACGCGCCAATTCCAAGGCGGCACCCCG
AAGATCCGCGCCGGCATCCAAACCGCGTGCCAAACGCTGTACGCCGGCGG
CCACGCAATCGCCTTCATCTCCGGCCGCACCGAGCACCGCCTGCGAAACG
CCACCGGCGACAGCTTCCCGCTCGCGGCGCGGCACGGCCGCACGTTGGTG
CTGTCGTCGCGCGAGGTGGTGCGCCTGGGCCCGCCCGTCGATCTCAGCGC
GGAGATCCGCGCCGCGGAGGCGTTTGCACACTCGCTCAATGTGACGTGCT
GGAATGACGGCGACACCGTGGAGATTGGCTTTCAGGGACGCGAGTGTTTG
AAACCGGTGGTGGAGATTTTCATGCGCCATTTGGTGCAACGGCGCCCGCA
GGAGCTGCAGTTGCTGCCGTTGAAGAAGGTCACGGAGATTATCCCTTGTG
GCGTGGGAAAAGGCGTGGCGTTGGATTACTTCATGGACAATGACCCTAGG
TTTAGTGATAGTTTTGTAATGTACTTTGGCGATGATTTGAATGATATTCC
GGCGGGCAGGGCGGCGCAGAGGCGCGGAGGGCTGCTGGTTTGGGTTGGTG
ATGTTGCTGCCGCTGTTGATGCGGCGGCCGACTACTACGTTGCCGACCCT
GCTGCTGTGGAACACTTGCTAGTACAGCTGTGCAATGATTGA
back to top