Ggra4226.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4226.t1
Unique Name	Ggra4226.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	440

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000880_pilon	contig	tig00000880_pilon:299114..300433 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4226	Ggra4226	Gracilaria gracilis GNS1m male	gene	tig00000880_pilon 299114..300433 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4226.t1.start1	Ggra4226.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000880_pilon 299114..299116 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4226.t1.CDS1	Ggra4226.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000880_pilon 299114..300433 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4226.t1.exon1	Ggra4226.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000880_pilon 299114..300433 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4226.t1.stop1	Ggra4226.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000880_pilon 300431..300433 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4226.t1	Ggra4226.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000880_pilon 299114..300433 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000880_pilon:299114..300433+
coding sequence from alignment at tig00000880_pilon:299114..300433+

mRNA sequence

>Ggra4226.t1 ID=Ggra4226.t1|Name=Ggra4226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
MSPSEAMPQHEQPLVTVKDYRPSCHSSSSSDAPDSTDDEFDFEVEKPCPF
AHLPKKSRLGRLYITRFANGFWSERPIVTTVETPLKLRCWAINGPDDFYD
EQLEREPFSRDDDTIVPMTAMGFLASHRELLRQPPSPKPSVGKISPLQKC
YIKIVRPSPVKHRVATPRAKASLEHDVDDMLSTKGRLVEEPCGLSDSSSD
SKSQLNFTFNPYTNSSNSTSINFCLRSEEDTSSGESHHQIDDAYEAPLLS
VSTGSNLKPPKEQVQTLTHRVEQLMSLANSLQGRITACNREKIQLQQQVQ
VLQAVQSCSEDSTSPRSSASEPSAETKPKRPSSKTKCVAREEERLRMELL
QEKQKTAEVQVENERLLAVILKLKREMDIEHDLHESIKNKAVPEQSGGKW
QRIRQLVRSSSGLWDPKELKKRSTLQRGWSFARSKSRKR*

spliced messenger RNA

>Ggra4226.t1 ID=Ggra4226.t1|Name=Ggra4226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000880_pilon:299114..300433+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGAGTGAAGCCATGCCACAGCATGAACAGCCCCTAGTCACTGT
CAAGGACTATCGCCCGTCGTGCCATAGCTCAAGCAGCAGTGACGCCCCTG
ATAGCACGGATGATGAGTTCGACTTCGAGGTCGAGAAGCCTTGCCCTTTC
GCGCATCTTCCCAAGAAATCGAGGCTTGGGCGGCTGTATATTACTCGCTT
TGCAAACGGTTTTTGGAGTGAGAGACCTATCGTCACAACCGTCGAAACCC
CCCTCAAGCTGCGATGCTGGGCAATCAACGGTCCAGATGACTTTTACGAC
GAACAGTTAGAGCGCGAACCGTTCAGCAGGGATGACGACACCATTGTCCC
AATGACCGCCATGGGCTTTCTCGCTTCTCACCGGGAGCTCCTTCGTCAGC
CACCTTCACCCAAACCCAGTGTTGGCAAAATTTCCCCGCTTCAGAAGTGC
TACATCAAGATTGTTCGTCCTTCCCCTGTCAAACATCGTGTAGCCACACC
CCGAGCTAAGGCATCTTTGGAGCATGATGTCGACGACATGCTGAGCACGA
AGGGCAGACTTGTGGAAGAACCTTGCGGCCTGTCAGACTCTTCTTCAGAC
AGCAAATCACAGCTTAATTTCACTTTCAACCCATACACGAACAGTTCTAA
CTCAACATCCATTAACTTCTGTTTGCGGTCCGAGGAGGATACAAGTTCGG
GAGAATCGCATCATCAAATCGATGACGCGTACGAGGCACCTCTGTTGTCA
GTGTCTACCGGCTCAAATCTGAAACCACCCAAAGAACAGGTGCAGACGCT
GACACATCGTGTCGAGCAGCTCATGAGTCTCGCCAATTCTCTTCAGGGCC
GAATAACTGCTTGCAACAGGGAAAAGATTCAGTTACAACAACAAGTACAA
GTATTGCAAGCAGTGCAGTCCTGCTCCGAAGACTCCACATCACCGCGAAG
CTCTGCTAGTGAACCCAGTGCGGAAACAAAGCCCAAGCGGCCGAGCTCAA
AGACAAAATGTGTTGCCCGGGAAGAAGAGAGGTTGAGAATGGAGCTCTTA
CAGGAGAAGCAGAAAACGGCAGAAGTACAGGTGGAGAATGAGAGGCTGCT
TGCGGTAATCTTGAAGCTGAAACGAGAAATGGATATCGAGCATGACCTTC
ACGAGAGCATCAAAAACAAGGCTGTTCCCGAACAGAGTGGAGGAAAGTGG
CAAAGGATCAGACAGTTAGTGAGATCTTCTAGTGGACTGTGGGATCCCAA
GGAATTGAAGAAAAGGTCGACGCTCCAACGCGGGTGGTCGTTCGCAAGAA
GCAAGAGTCGCAAGCGATAA

protein sequence of Ggra4226.t1

>Ggra4226.t1 ID=Ggra4226.t1|Name=Ggra4226.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
MSPSEAMPQHEQPLVTVKDYRPSCHSSSSSDAPDSTDDEFDFEVEKPCPF
AHLPKKSRLGRLYITRFANGFWSERPIVTTVETPLKLRCWAINGPDDFYD
EQLEREPFSRDDDTIVPMTAMGFLASHRELLRQPPSPKPSVGKISPLQKC
YIKIVRPSPVKHRVATPRAKASLEHDVDDMLSTKGRLVEEPCGLSDSSSD
SKSQLNFTFNPYTNSSNSTSINFCLRSEEDTSSGESHHQIDDAYEAPLLS
VSTGSNLKPPKEQVQTLTHRVEQLMSLANSLQGRITACNREKIQLQQQVQ
VLQAVQSCSEDSTSPRSSASEPSAETKPKRPSSKTKCVAREEERLRMELL
QEKQKTAEVQVENERLLAVILKLKREMDIEHDLHESIKNKAVPEQSGGKW
QRIRQLVRSSSGLWDPKELKKRSTLQRGWSFARSKSRKR*

mRNA from alignment at tig00000880_pilon:299114..300433+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4226.t1 ID=Ggra4226.t1|Name=Ggra4226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000880_pilon:299114..300433+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGAGTGAAGCCATGCCACAGCATGAACAGCCCCTAGTCACTGT
CAAGGACTATCGCCCGTCGTGCCATAGCTCAAGCAGCAGTGACGCCCCTG
ATAGCACGGATGATGAGTTCGACTTCGAGGTCGAGAAGCCTTGCCCTTTC
GCGCATCTTCCCAAGAAATCGAGGCTTGGGCGGCTGTATATTACTCGCTT
TGCAAACGGTTTTTGGAGTGAGAGACCTATCGTCACAACCGTCGAAACCC
CCCTCAAGCTGCGATGCTGGGCAATCAACGGTCCAGATGACTTTTACGAC
GAACAGTTAGAGCGCGAACCGTTCAGCAGGGATGACGACACCATTGTCCC
AATGACCGCCATGGGCTTTCTCGCTTCTCACCGGGAGCTCCTTCGTCAGC
CACCTTCACCCAAACCCAGTGTTGGCAAAATTTCCCCGCTTCAGAAGTGC
TACATCAAGATTGTTCGTCCTTCCCCTGTCAAACATCGTGTAGCCACACC
CCGAGCTAAGGCATCTTTGGAGCATGATGTCGACGACATGCTGAGCACGA
AGGGCAGACTTGTGGAAGAACCTTGCGGCCTGTCAGACTCTTCTTCAGAC
AGCAAATCACAGCTTAATTTCACTTTCAACCCATACACGAACAGTTCTAA
CTCAACATCCATTAACTTCTGTTTGCGGTCCGAGGAGGATACAAGTTCGG
GAGAATCGCATCATCAAATCGATGACGCGTACGAGGCACCTCTGTTGTCA
GTGTCTACCGGCTCAAATCTGAAACCACCCAAAGAACAGGTGCAGACGCT
GACACATCGTGTCGAGCAGCTCATGAGTCTCGCCAATTCTCTTCAGGGCC
GAATAACTGCTTGCAACAGGGAAAAGATTCAGTTACAACAACAAGTACAA
GTATTGCAAGCAGTGCAGTCCTGCTCCGAAGACTCCACATCACCGCGAAG
CTCTGCTAGTGAACCCAGTGCGGAAACAAAGCCCAAGCGGCCGAGCTCAA
AGACAAAATGTGTTGCCCGGGAAGAAGAGAGGTTGAGAATGGAGCTCTTA
CAGGAGAAGCAGAAAACGGCAGAAGTACAGGTGGAGAATGAGAGGCTGCT
TGCGGTAATCTTGAAGCTGAAACGAGAAATGGATATCGAGCATGACCTTC
ACGAGAGCATCAAAAACAAGGCTGTTCCCGAACAGAGTGGAGGAAAGTGG
CAAAGGATCAGACAGTTAGTGAGATCTTCTAGTGGACTGTGGGATCCCAA
GGAATTGAAGAAAAGGTCGACGCTCCAACGCGGGTGGTCGTTCGCAAGAA
GCAAGAGTCGCAAGCGATAA

Coding sequence (CDS) from alignment at tig00000880_pilon:299114..300433+

>Ggra4226.t1 ID=Ggra4226.t1|Name=Ggra4226.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000880_pilon:299114..300433+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGAGTGAAGCCATGCCACAGCATGAACAGCCCCTAGTCACTGT
CAAGGACTATCGCCCGTCGTGCCATAGCTCAAGCAGCAGTGACGCCCCTG
ATAGCACGGATGATGAGTTCGACTTCGAGGTCGAGAAGCCTTGCCCTTTC
GCGCATCTTCCCAAGAAATCGAGGCTTGGGCGGCTGTATATTACTCGCTT
TGCAAACGGTTTTTGGAGTGAGAGACCTATCGTCACAACCGTCGAAACCC
CCCTCAAGCTGCGATGCTGGGCAATCAACGGTCCAGATGACTTTTACGAC
GAACAGTTAGAGCGCGAACCGTTCAGCAGGGATGACGACACCATTGTCCC
AATGACCGCCATGGGCTTTCTCGCTTCTCACCGGGAGCTCCTTCGTCAGC
CACCTTCACCCAAACCCAGTGTTGGCAAAATTTCCCCGCTTCAGAAGTGC
TACATCAAGATTGTTCGTCCTTCCCCTGTCAAACATCGTGTAGCCACACC
CCGAGCTAAGGCATCTTTGGAGCATGATGTCGACGACATGCTGAGCACGA
AGGGCAGACTTGTGGAAGAACCTTGCGGCCTGTCAGACTCTTCTTCAGAC
AGCAAATCACAGCTTAATTTCACTTTCAACCCATACACGAACAGTTCTAA
CTCAACATCCATTAACTTCTGTTTGCGGTCCGAGGAGGATACAAGTTCGG
GAGAATCGCATCATCAAATCGATGACGCGTACGAGGCACCTCTGTTGTCA
GTGTCTACCGGCTCAAATCTGAAACCACCCAAAGAACAGGTGCAGACGCT
GACACATCGTGTCGAGCAGCTCATGAGTCTCGCCAATTCTCTTCAGGGCC
GAATAACTGCTTGCAACAGGGAAAAGATTCAGTTACAACAACAAGTACAA
GTATTGCAAGCAGTGCAGTCCTGCTCCGAAGACTCCACATCACCGCGAAG
CTCTGCTAGTGAACCCAGTGCGGAAACAAAGCCCAAGCGGCCGAGCTCAA
AGACAAAATGTGTTGCCCGGGAAGAAGAGAGGTTGAGAATGGAGCTCTTA
CAGGAGAAGCAGAAAACGGCAGAAGTACAGGTGGAGAATGAGAGGCTGCT
TGCGGTAATCTTGAAGCTGAAACGAGAAATGGATATCGAGCATGACCTTC
ACGAGAGCATCAAAAACAAGGCTGTTCCCGAACAGAGTGGAGGAAAGTGG
CAAAGGATCAGACAGTTAGTGAGATCTTCTAGTGGACTGTGGGATCCCAA
GGAATTGAAGAAAAGGTCGACGCTCCAACGCGGGTGGTCGTTCGCAAGAA
GCAAGAGTCGCAAGCGATAA