Ggra4199.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4199.t1
Unique NameGgra4199.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:56035..57070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1408424.JHYI01000021_gene42
PFAMsCBM_4_9,CBM_6,Cadherin-like,F5_F8_type_C,FIVAR,Glyco_hydro_16,Gram_pos_anchor,SLH
Max annot lvl91061|Bacilli
Evalue6.05e-46
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,1TR5U@1239|Firmicutes,4HB9D@91061|Bacilli,1ZFAG@1386|Bacillus
DescriptionGlycoside hydrolase family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4199Ggra4199Gracilaria gracilis GNS1m malegenetig00000880_pilon 56035..57070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4199.t1Ggra4199.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 56035..57070 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4199.t1.start1Ggra4199.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 56035..56037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4199.t1.CDS1Ggra4199.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 56035..56040 +
Ggra4199.t1.CDS2Ggra4199.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000880_pilon 56121..56149 +
Ggra4199.t1.CDS3Ggra4199.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000880_pilon 56371..57070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4199.t1.exon1Ggra4199.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 56035..56040 +
Ggra4199.t1.exon2Ggra4199.t1.exon2Gracilaria gracilis GNS1m maleexontig00000880_pilon 56121..56149 +
Ggra4199.t1.exon3Ggra4199.t1.exon3Gracilaria gracilis GNS1m maleexontig00000880_pilon 56371..57070 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4199.t1.intron1Ggra4199.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000880_pilon 56041..56120 +
Ggra4199.t1.intron2Ggra4199.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000880_pilon 56150..56370 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4199.t1.stop1Ggra4199.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 57068..57070 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4199.t1 ID=Ggra4199.t1|Name=Ggra4199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MEHHLPELREAPFVDTFKFLKHSRWKVSDGYANGVPFNCWWSKTATAIDE
NNGQLKLTISKQHNHGKPYKSGQLMSKDWYGYGCYEVRMRPVAQPGVITT
FFSYTGPWDAAPGKSKAHNEVDIEFVWKEGKLSLQANYFKNGQGGNEHKI
PINFNPAESMNNYGFKWTSNSITWFVNGKKMYETSKNIPKVHEAPHKIMM
SLWPVSWEGAQWGGTFVYKGHRTAAYDGVRFTKGQNCKIMNWFP*
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spliced messenger RNA

>Ggra4199.t1 ID=Ggra4199.t1|Name=Ggra4199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000880_pilon:56035..57070+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACATCATCTACCCGAACTGCGCGAAGCCCCTTTTGTGGACACCTT
CAAGTTCTTGAAACATTCCCGTTGGAAAGTGTCAGATGGATACGCTAACG
GGGTTCCGTTTAATTGCTGGTGGTCCAAGACCGCGACCGCAATCGACGAG
AACAACGGACAACTCAAACTGACAATTTCAAAGCAACATAACCATGGAAA
GCCTTACAAAAGCGGGCAGCTCATGTCAAAGGACTGGTACGGATACGGAT
GTTACGAAGTTCGCATGCGCCCTGTAGCACAACCTGGGGTGATCACGACG
TTCTTCTCGTACACCGGACCATGGGATGCGGCGCCTGGTAAGAGCAAAGC
GCACAACGAGGTTGACATTGAGTTCGTGTGGAAGGAGGGAAAGCTTTCTT
TGCAGGCGAATTACTTCAAAAACGGTCAGGGGGGTAACGAACATAAGATT
CCGATAAACTTCAATCCCGCAGAGTCGATGAATAACTACGGATTCAAGTG
GACTAGCAATTCGATCACATGGTTTGTGAACGGAAAGAAGATGTACGAGA
CTTCAAAGAACATTCCAAAGGTTCATGAAGCACCGCACAAGATCATGATG
AGCCTGTGGCCTGTGAGCTGGGAGGGGGCTCAATGGGGAGGTACTTTCGT
TTACAAAGGCCATCGCACGGCGGCTTATGACGGCGTGCGGTTCACAAAAG
GGCAGAATTGCAAGATCATGAACTGGTTCCCATGA
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protein sequence of Ggra4199.t1

>Ggra4199.t1 ID=Ggra4199.t1|Name=Ggra4199.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MEHHLPELREAPFVDTFKFLKHSRWKVSDGYANGVPFNCWWSKTATAIDE
NNGQLKLTISKQHNHGKPYKSGQLMSKDWYGYGCYEVRMRPVAQPGVITT
FFSYTGPWDAAPGKSKAHNEVDIEFVWKEGKLSLQANYFKNGQGGNEHKI
PINFNPAESMNNYGFKWTSNSITWFVNGKKMYETSKNIPKVHEAPHKIMM
SLWPVSWEGAQWGGTFVYKGHRTAAYDGVRFTKGQNCKIMNWFP*
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mRNA from alignment at tig00000880_pilon:56035..57070+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4199.t1 ID=Ggra4199.t1|Name=Ggra4199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1036bp|location=Sequence derived from alignment at tig00000880_pilon:56035..57070+ (Gracilaria gracilis GNS1m male)
ATGGAAGTAAGTTGGCCTCTATCTGCGAGGGATCACCAAACGGACGCGAT
CTAACAACATTTCCTCTCAACGCGGGTGTCACAAAGCATCATCTACCCGA
ACTGCGCGAAGCCCCGTGAGCTCTGCCTCGGCATTGAAATTCATCTACGA
AGCACGCAACGCGCGTAACGCACACGCGCTGTTCACGGCCATTCGCaaca
agaagaacaaaaagccgaacaacaaggtcgccgtcacgaacaagaacaag
aacaaaaagaaacaaacgaacaaccgcaacaagaaGCCAAAATGGCAGAG
GCAACAAGGAGGATGCCCGAAAGCGGATCAATGCAGTTTTGTGGACACCT
TCAAGTTCTTGAAACATTCCCGTTGGAAAGTGTCAGATGGATACGCTAAC
GGGGTTCCGTTTAATTGCTGGTGGTCCAAGACCGCGACCGCAATCGACGA
GAACAACGGACAACTCAAACTGACAATTTCAAAGCAACATAACCATGGAA
AGCCTTACAAAAGCGGGCAGCTCATGTCAAAGGACTGGTACGGATACGGA
TGTTACGAAGTTCGCATGCGCCCTGTAGCACAACCTGGGGTGATCACGAC
GTTCTTCTCGTACACCGGACCATGGGATGCGGCGCCTGGTAAGAGCAAAG
CGCACAACGAGGTTGACATTGAGTTCGTGTGGAAGGAGGGAAAGCTTTCT
TTGCAGGCGAATTACTTCAAAAACGGTCAGGGGGGTAACGAACATAAGAT
TCCGATAAACTTCAATCCCGCAGAGTCGATGAATAACTACGGATTCAAGT
GGACTAGCAATTCGATCACATGGTTTGTGAACGGAAAGAAGATGTACGAG
ACTTCAAAGAACATTCCAAAGGTTCATGAAGCACCGCACAAGATCATGAT
GAGCCTGTGGCCTGTGAGCTGGGAGGGGGCTCAATGGGGAGGTACTTTCG
TTTACAAAGGCCATCGCACGGCGGCTTATGACGGCGTGCGGTTCACAAAA
GGGCAGAATTGCAAGATCATGAACTGGTTCCCATGA
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Coding sequence (CDS) from alignment at tig00000880_pilon:56035..57070+

>Ggra4199.t1 ID=Ggra4199.t1|Name=Ggra4199.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000880_pilon:56035..57070+ (Gracilaria gracilis GNS1m male)
ATGGAACATCATCTACCCGAACTGCGCGAAGCCCCTTTTGTGGACACCTT
CAAGTTCTTGAAACATTCCCGTTGGAAAGTGTCAGATGGATACGCTAACG
GGGTTCCGTTTAATTGCTGGTGGTCCAAGACCGCGACCGCAATCGACGAG
AACAACGGACAACTCAAACTGACAATTTCAAAGCAACATAACCATGGAAA
GCCTTACAAAAGCGGGCAGCTCATGTCAAAGGACTGGTACGGATACGGAT
GTTACGAAGTTCGCATGCGCCCTGTAGCACAACCTGGGGTGATCACGACG
TTCTTCTCGTACACCGGACCATGGGATGCGGCGCCTGGTAAGAGCAAAGC
GCACAACGAGGTTGACATTGAGTTCGTGTGGAAGGAGGGAAAGCTTTCTT
TGCAGGCGAATTACTTCAAAAACGGTCAGGGGGGTAACGAACATAAGATT
CCGATAAACTTCAATCCCGCAGAGTCGATGAATAACTACGGATTCAAGTG
GACTAGCAATTCGATCACATGGTTTGTGAACGGAAAGAAGATGTACGAGA
CTTCAAAGAACATTCCAAAGGTTCATGAAGCACCGCACAAGATCATGATG
AGCCTGTGGCCTGTGAGCTGGGAGGGGGCTCAATGGGGAGGTACTTTCGT
TTACAAAGGCCATCGCACGGCGGCTTATGACGGCGTGCGGTTCACAAAAG
GGCAGAATTGCAAGATCATGAACTGGTTCCCATGA
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