Ggra417.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra417.t1
Unique Name	Ggra417.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	712

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000928_pilon	contig	tig00000928_pilon:119105..121240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	56110.Oscil6304_5927
Preferred name	rpoB
PFAMs	RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC02795
KEGG ko	ko:K03043
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG Module	M00183
GOs	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234
Evalue	0.0
EggNOG OGs	COG0085@1\|root,COG0085@2\|Bacteria,1G14Y@1117\|Cyanobacteria,1H8TE@1150\|Oscillatoriales
EC	2.7.7.6
Description	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra417	Ggra417	Gracilaria gracilis GNS1m male	gene	tig00000928_pilon 119105..121240 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra417.t1.start1	Ggra417.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000928_pilon 119105..119107 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra417.t1.CDS1	Ggra417.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000928_pilon 119105..121240 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra417.t1.exon1	Ggra417.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000928_pilon 119105..121240 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra417.t1.stop1	Ggra417.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000928_pilon 121238..121240 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra417.t1	Ggra417.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000928_pilon 119105..121240 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000928_pilon:119105..121240+
coding sequence from alignment at tig00000928_pilon:119105..121240+

mRNA sequence

>Ggra417.t1 ID=Ggra417.t1|Name=Ggra417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=712bp
MDQTNPLSELTHKRRISALGPGGLNKDRAGFAVRDLHPSHYGRICPIETP
EGPNAGLIGSLSIYAKVNRYGFIETPCYKVINGQVLKNNNLYYITADQED
YLRIAPADITLDNNDFIKDNVIAVRYKQEFITANINQVDYIAVSPIQFIS
AATSLIPFLEHDDANRALMGSNMQRQAVPLLFPEKSIVGTGLEAKIAKDS
GMIITSRTNGIVSYVSGTKVGIQNKEGYTIHYRLKKYYRSNQDTCINQRP
IVWPGENICVGQTIADGASTDGGEIALGRNIIVAYMPWEGYNYEDAFLIS
ERLVYDDLYTSIHIERYELECRQTKLGSEEITRDIPNVSESSVSLLDKNG
VIAIGSWVDSGDILVGKVTPKGESDQLPEGKLLRAIFGEKARDVRDTSLR
LPNATKGRVVNIKIFKRQKGDELPPGTNEIIRVYVAQKRKIQVGDKMAGR
HGNKGIISRILAVQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGL
AGSYLGKRFKIIPFDEMYGSEASRALVNNKLQQASLITNQSWLFNSLHPG
KVMLIDGRTGEFFDNPVTVGKAYILKLVHLVDDKIHARSTGPYSLVTQQP
LGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNDALNSI
VKGKPIPKPGTPESFKVLMRELQSLALDIAVHKIESLDDGHKTSIEVDLM
SDEQVEQMSSI*

spliced messenger RNA

>Ggra417.t1 ID=Ggra417.t1|Name=Ggra417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2136bp|location=Sequence derived from alignment at tig00000928_pilon:119105..121240+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAAACAAATCCTCTATCAGAGTTAACTCATAAGAGGAGAATTAG
TGCTTTAGGTCCTGGAGGTCTTAATAAGGATAGAGCAGGCTTTGCTGTTA
GAGATTTACATCCTAGTCATTATGGACGTATATGTCCAATAGAGACACCA
GAAGGGCCAAATGCTGGTTTAATAGGTTCTTTAAGTATATATGCTAAAGT
AAATCGATATGGCTTTATAGAAACTCCATGCTATAAAGTTATTAATGGCC
AAGTATTAAAAAATAATAACCTGTACTATATAACTGCTGATCAAGAAGAT
TACTTGCGTATAGCTCCAGCAGATATTACCTTGGATAATAATGATTTTAT
AAAAGATAATGTTATTGCTGTAAGGTATAAGCAAGAGTTTATTACCGCTA
ATATTAATCAAGTCGATTATATCGCTGTGTCTCCAATTCAGTTTATATCT
GCTGCTACTTCTTTAATTCCTTTTTTAGAGCATGATGATGCAAATAGAGC
TTTAATGGGATCGAATATGCAGAGGCAAGCGGTACCTTTACTTTTTCCAG
AAAAGTCTATCGTTGGTACAGGTTTAGAAGCTAAGATAGCTAAGGATTCA
GGTATGATTATAACGAGTCGTACTAATGGTATTGTTAGTTATGTATCCGG
TACAAAAGTTGGTATACAGAATAAAGAAGGTTATACGATTCATTACAGAT
TGAAAAAGTATTATCGCTCTAATCAGGACACCTGTATTAATCAAAGGCCT
ATAGTATGGCCAGGAGAAAATATTTGTGTAGGTCAAACTATTGCAGATGG
TGCTTCAACAGATGGTGGTGAAATAGCTTTGGGCAGGAATATTATAGTTG
CTTATATGCCTTGGGAAGGCTATAATTATGAAGACGCTTTTTTGATTAGT
GAACGTCTTGTATATGATGATTTATATACTTCTATACATATTGAAAGATA
TGAATTAGAATGTCGACAAACAAAGTTAGGCTCAGAAGAAATTACACGAG
ATATTCCTAATGTTAGCGAATCCTCTGTTAGTTTATTAGATAAAAATGGT
GTAATTGCTATTGGATCTTGGGTAGATTCTGGCGATATATTAGTAGGTAA
AGTTACACCTAAAGGAGAATCAGATCAGTTGCCAGAGGGAAAATTACTAC
GAGCTATATTTGGTGAAAAAGCAAGAGATGTGCGTGATACTTCTTTAAGG
TTACCTAATGCCACGAAAGGAAGAGTTGTTAATATAAAAATTTTCAAGCG
TCAAAAAGGAGATGAACTTCCACCAGGAACTAATGAAATAATAAGAGTTT
ATGTAGCTCAGAAAAGGAAAATTCAAGTAGGCGACAAGATGGCTGGTCGT
CATGGGAATAAAGGTATTATTTCACGTATTTTAGCTGTTCAAGATATGCC
TTTTTTACCAGATGGTACACCTGTAGATATCATTTTAAATCCTTTAGGCG
TACCTTCAAGAATGAATGTGGGCCAATTATTTGAGTGCTTACTTGGTTTG
GCAGGTTCATATTTGGGTAAACGTTTCAAGATAATACCTTTTGATGAGAT
GTATGGATCAGAAGCTTCTCGTGCTTTAGTTAATAATAAGTTACAACAAG
CTAGTTTAATTACTAATCAATCTTGGTTATTTAATTCTTTACATCCTGGT
AAAGTTATGCTTATTGATGGTAGAACAGGAGAATTTTTTGATAACCCTGT
AACAGTTGGTAAAGCGTATATTTTAAAGCTTGTTCATTTAGTTGATGATA
AAATTCATGCACGTTCTACAGGCCCTTACTCTTTAGTAACACAACAGCCT
TTAGGAGGGCGTGCTCAGCATGGAGGTCAAAGATTAGGAGAAATGGAAGT
ATGGGCTTTAGAAGCATTTGGTGCAGCATATACTTTGCAAGAGTTATTGA
CAGTTAAGTCAGATGATATGCAAGGAAGAAATGATGCTTTAAATTCCATA
GTTAAAGGGAAGCCTATACCTAAACCAGGAACTCCCGAATCTTTTAAGGT
TCTTATGAGAGAGTTACAGTCTTTGGCACTTGATATTGCTGTACATAAAA
TAGAGTCACTTGATGATGGACATAAGACTAGTATAGAAGTTGATCTAATG
TCTGATGAACAAGTAGAACAAATGAGCTCTATTTAA

protein sequence of Ggra417.t1

>Ggra417.t1 ID=Ggra417.t1|Name=Ggra417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=712bp
MDQTNPLSELTHKRRISALGPGGLNKDRAGFAVRDLHPSHYGRICPIETP
EGPNAGLIGSLSIYAKVNRYGFIETPCYKVINGQVLKNNNLYYITADQED
YLRIAPADITLDNNDFIKDNVIAVRYKQEFITANINQVDYIAVSPIQFIS
AATSLIPFLEHDDANRALMGSNMQRQAVPLLFPEKSIVGTGLEAKIAKDS
GMIITSRTNGIVSYVSGTKVGIQNKEGYTIHYRLKKYYRSNQDTCINQRP
IVWPGENICVGQTIADGASTDGGEIALGRNIIVAYMPWEGYNYEDAFLIS
ERLVYDDLYTSIHIERYELECRQTKLGSEEITRDIPNVSESSVSLLDKNG
VIAIGSWVDSGDILVGKVTPKGESDQLPEGKLLRAIFGEKARDVRDTSLR
LPNATKGRVVNIKIFKRQKGDELPPGTNEIIRVYVAQKRKIQVGDKMAGR
HGNKGIISRILAVQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGL
AGSYLGKRFKIIPFDEMYGSEASRALVNNKLQQASLITNQSWLFNSLHPG
KVMLIDGRTGEFFDNPVTVGKAYILKLVHLVDDKIHARSTGPYSLVTQQP
LGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNDALNSI
VKGKPIPKPGTPESFKVLMRELQSLALDIAVHKIESLDDGHKTSIEVDLM
SDEQVEQMSSI*

mRNA from alignment at tig00000928_pilon:119105..121240+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra417.t1 ID=Ggra417.t1|Name=Ggra417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2136bp|location=Sequence derived from alignment at tig00000928_pilon:119105..121240+ (Gracilaria gracilis GNS1m male)
ATGGATCAAACAAATCCTCTATCAGAGTTAACTCATAAGAGGAGAATTAG
TGCTTTAGGTCCTGGAGGTCTTAATAAGGATAGAGCAGGCTTTGCTGTTA
GAGATTTACATCCTAGTCATTATGGACGTATATGTCCAATAGAGACACCA
GAAGGGCCAAATGCTGGTTTAATAGGTTCTTTAAGTATATATGCTAAAGT
AAATCGATATGGCTTTATAGAAACTCCATGCTATAAAGTTATTAATGGCC
AAGTATTAAAAAATAATAACCTGTACTATATAACTGCTGATCAAGAAGAT
TACTTGCGTATAGCTCCAGCAGATATTACCTTGGATAATAATGATTTTAT
AAAAGATAATGTTATTGCTGTAAGGTATAAGCAAGAGTTTATTACCGCTA
ATATTAATCAAGTCGATTATATCGCTGTGTCTCCAATTCAGTTTATATCT
GCTGCTACTTCTTTAATTCCTTTTTTAGAGCATGATGATGCAAATAGAGC
TTTAATGGGATCGAATATGCAGAGGCAAGCGGTACCTTTACTTTTTCCAG
AAAAGTCTATCGTTGGTACAGGTTTAGAAGCTAAGATAGCTAAGGATTCA
GGTATGATTATAACGAGTCGTACTAATGGTATTGTTAGTTATGTATCCGG
TACAAAAGTTGGTATACAGAATAAAGAAGGTTATACGATTCATTACAGAT
TGAAAAAGTATTATCGCTCTAATCAGGACACCTGTATTAATCAAAGGCCT
ATAGTATGGCCAGGAGAAAATATTTGTGTAGGTCAAACTATTGCAGATGG
TGCTTCAACAGATGGTGGTGAAATAGCTTTGGGCAGGAATATTATAGTTG
CTTATATGCCTTGGGAAGGCTATAATTATGAAGACGCTTTTTTGATTAGT
GAACGTCTTGTATATGATGATTTATATACTTCTATACATATTGAAAGATA
TGAATTAGAATGTCGACAAACAAAGTTAGGCTCAGAAGAAATTACACGAG
ATATTCCTAATGTTAGCGAATCCTCTGTTAGTTTATTAGATAAAAATGGT
GTAATTGCTATTGGATCTTGGGTAGATTCTGGCGATATATTAGTAGGTAA
AGTTACACCTAAAGGAGAATCAGATCAGTTGCCAGAGGGAAAATTACTAC
GAGCTATATTTGGTGAAAAAGCAAGAGATGTGCGTGATACTTCTTTAAGG
TTACCTAATGCCACGAAAGGAAGAGTTGTTAATATAAAAATTTTCAAGCG
TCAAAAAGGAGATGAACTTCCACCAGGAACTAATGAAATAATAAGAGTTT
ATGTAGCTCAGAAAAGGAAAATTCAAGTAGGCGACAAGATGGCTGGTCGT
CATGGGAATAAAGGTATTATTTCACGTATTTTAGCTGTTCAAGATATGCC
TTTTTTACCAGATGGTACACCTGTAGATATCATTTTAAATCCTTTAGGCG
TACCTTCAAGAATGAATGTGGGCCAATTATTTGAGTGCTTACTTGGTTTG
GCAGGTTCATATTTGGGTAAACGTTTCAAGATAATACCTTTTGATGAGAT
GTATGGATCAGAAGCTTCTCGTGCTTTAGTTAATAATAAGTTACAACAAG
CTAGTTTAATTACTAATCAATCTTGGTTATTTAATTCTTTACATCCTGGT
AAAGTTATGCTTATTGATGGTAGAACAGGAGAATTTTTTGATAACCCTGT
AACAGTTGGTAAAGCGTATATTTTAAAGCTTGTTCATTTAGTTGATGATA
AAATTCATGCACGTTCTACAGGCCCTTACTCTTTAGTAACACAACAGCCT
TTAGGAGGGCGTGCTCAGCATGGAGGTCAAAGATTAGGAGAAATGGAAGT
ATGGGCTTTAGAAGCATTTGGTGCAGCATATACTTTGCAAGAGTTATTGA
CAGTTAAGTCAGATGATATGCAAGGAAGAAATGATGCTTTAAATTCCATA
GTTAAAGGGAAGCCTATACCTAAACCAGGAACTCCCGAATCTTTTAAGGT
TCTTATGAGAGAGTTACAGTCTTTGGCACTTGATATTGCTGTACATAAAA
TAGAGTCACTTGATGATGGACATAAGACTAGTATAGAAGTTGATCTAATG
TCTGATGAACAAGTAGAACAAATGAGCTCTATTTAA

Coding sequence (CDS) from alignment at tig00000928_pilon:119105..121240+

>Ggra417.t1 ID=Ggra417.t1|Name=Ggra417.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2136bp|location=Sequence derived from alignment at tig00000928_pilon:119105..121240+ (Gracilaria gracilis GNS1m male)
ATGGATCAAACAAATCCTCTATCAGAGTTAACTCATAAGAGGAGAATTAG
TGCTTTAGGTCCTGGAGGTCTTAATAAGGATAGAGCAGGCTTTGCTGTTA
GAGATTTACATCCTAGTCATTATGGACGTATATGTCCAATAGAGACACCA
GAAGGGCCAAATGCTGGTTTAATAGGTTCTTTAAGTATATATGCTAAAGT
AAATCGATATGGCTTTATAGAAACTCCATGCTATAAAGTTATTAATGGCC
AAGTATTAAAAAATAATAACCTGTACTATATAACTGCTGATCAAGAAGAT
TACTTGCGTATAGCTCCAGCAGATATTACCTTGGATAATAATGATTTTAT
AAAAGATAATGTTATTGCTGTAAGGTATAAGCAAGAGTTTATTACCGCTA
ATATTAATCAAGTCGATTATATCGCTGTGTCTCCAATTCAGTTTATATCT
GCTGCTACTTCTTTAATTCCTTTTTTAGAGCATGATGATGCAAATAGAGC
TTTAATGGGATCGAATATGCAGAGGCAAGCGGTACCTTTACTTTTTCCAG
AAAAGTCTATCGTTGGTACAGGTTTAGAAGCTAAGATAGCTAAGGATTCA
GGTATGATTATAACGAGTCGTACTAATGGTATTGTTAGTTATGTATCCGG
TACAAAAGTTGGTATACAGAATAAAGAAGGTTATACGATTCATTACAGAT
TGAAAAAGTATTATCGCTCTAATCAGGACACCTGTATTAATCAAAGGCCT
ATAGTATGGCCAGGAGAAAATATTTGTGTAGGTCAAACTATTGCAGATGG
TGCTTCAACAGATGGTGGTGAAATAGCTTTGGGCAGGAATATTATAGTTG
CTTATATGCCTTGGGAAGGCTATAATTATGAAGACGCTTTTTTGATTAGT
GAACGTCTTGTATATGATGATTTATATACTTCTATACATATTGAAAGATA
TGAATTAGAATGTCGACAAACAAAGTTAGGCTCAGAAGAAATTACACGAG
ATATTCCTAATGTTAGCGAATCCTCTGTTAGTTTATTAGATAAAAATGGT
GTAATTGCTATTGGATCTTGGGTAGATTCTGGCGATATATTAGTAGGTAA
AGTTACACCTAAAGGAGAATCAGATCAGTTGCCAGAGGGAAAATTACTAC
GAGCTATATTTGGTGAAAAAGCAAGAGATGTGCGTGATACTTCTTTAAGG
TTACCTAATGCCACGAAAGGAAGAGTTGTTAATATAAAAATTTTCAAGCG
TCAAAAAGGAGATGAACTTCCACCAGGAACTAATGAAATAATAAGAGTTT
ATGTAGCTCAGAAAAGGAAAATTCAAGTAGGCGACAAGATGGCTGGTCGT
CATGGGAATAAAGGTATTATTTCACGTATTTTAGCTGTTCAAGATATGCC
TTTTTTACCAGATGGTACACCTGTAGATATCATTTTAAATCCTTTAGGCG
TACCTTCAAGAATGAATGTGGGCCAATTATTTGAGTGCTTACTTGGTTTG
GCAGGTTCATATTTGGGTAAACGTTTCAAGATAATACCTTTTGATGAGAT
GTATGGATCAGAAGCTTCTCGTGCTTTAGTTAATAATAAGTTACAACAAG
CTAGTTTAATTACTAATCAATCTTGGTTATTTAATTCTTTACATCCTGGT
AAAGTTATGCTTATTGATGGTAGAACAGGAGAATTTTTTGATAACCCTGT
AACAGTTGGTAAAGCGTATATTTTAAAGCTTGTTCATTTAGTTGATGATA
AAATTCATGCACGTTCTACAGGCCCTTACTCTTTAGTAACACAACAGCCT
TTAGGAGGGCGTGCTCAGCATGGAGGTCAAAGATTAGGAGAAATGGAAGT
ATGGGCTTTAGAAGCATTTGGTGCAGCATATACTTTGCAAGAGTTATTGA
CAGTTAAGTCAGATGATATGCAAGGAAGAAATGATGCTTTAAATTCCATA
GTTAAAGGGAAGCCTATACCTAAACCAGGAACTCCCGAATCTTTTAAGGT
TCTTATGAGAGAGTTACAGTCTTTGGCACTTGATATTGCTGTACATAAAA
TAGAGTCACTTGATGATGGACATAAGACTAGTATAGAAGTTGATCTAATG
TCTGATGAACAAGTAGAACAAATGAGCTCTATTTAA