Ggra4167.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4167.t1
Unique NameGgra4167.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:444008..444836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4167Ggra4167Gracilaria gracilis GNS1m malegenetig00000853_pilon 444008..444836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4167.t1Ggra4167.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 444008..444836 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4167.t1.stop1Ggra4167.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 444008..444010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4167.t1.CDS1Ggra4167.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 444008..444637 -
Ggra4167.t1.CDS2Ggra4167.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 444756..444836 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4167.t1.exon1Ggra4167.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 444008..444637 -
Ggra4167.t1.exon2Ggra4167.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 444756..444836 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4167.t1.intron1Ggra4167.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 444638..444755 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4167.t1.start1Ggra4167.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 444834..444836 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4167.t1 ID=Ggra4167.t1|Name=Ggra4167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MVGCGDRVGYPLRGIRPHRGLRPLSALCDEVPIEQSGRRDGGSGGSGPGL
GRNTPLAGDLVYFDPWDYQEISREQAEEFRAAPREIPSDHPRGYVDSDNY
YHAYSGGDSMVDNDPDASGETVEDDGDEADAVGNDNQVGNAPAEPGSNTP
ADPNTGQSAAAVTTEQEDGPPPPSASAGSGNPSSGPLNEQEIIARFLRGA
GLSATEASGDVVEMADALANRLGGGAPPSGGSGSNH*
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spliced messenger RNA

>Ggra4167.t1 ID=Ggra4167.t1|Name=Ggra4167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000853_pilon:444008..444836- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGTTGTGGTGACCGAGTGGGCTACCCGCTTCGCGGCATACGTCC
TCACCGAGGCCTACGACCATTATCGGCTTTGTGCGACGAGGTTCCCATCG
AACAGAGTGGCCGTCGAGACGGTGGTAGTGGCGGTTCCGGTCCCGGACTC
GGGCGCAATACTCCGCTCGCGGGCGACTTAGTGTATTTCGACCCGTGGGA
CTACCAGGAAATCAGCCGCGAGCAAGCGGAAGAATTCCGGGCTGCCCCGC
GTGAAATCCCCAGCGACCACCCGCGAGGGTACGTCGACTCGGACAATTAT
TATCACGCTTACAGCGGGGGCGATTCAATGGTGGATAACGACCCCGATGC
ATCGGGTGAGACGGTCGAAGACGACGGTGACGAAGCCGACGCGGTCGGGA
ATGACAACCAAGTTGGTAACGCTCCGGCGGAGCCGGGTTCGAATACTCCC
GCTGATCCCAATACGGGGCAGTCCGCTGCGGCGGTGACGACGGAACAAGA
GGATGGTCCTCCTCCGCCTTCGGCGAGCGCTGGATCAGGCAATCCCAGTT
CTGGGCCGCTGAATGAGCAGGAGATCATTGCTCGCTTCCTGCGTGGTGCA
GGCCTCAGCGCCACCGAAGCTTCGGGTGATGTCGTCGAAATGGCGGATGC
CCTGGCGAACCGCCTCGGCGGGGGTGCTCCACCTAGTGGGGGTAGCGGCT
CGAACCACTAG
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protein sequence of Ggra4167.t1

>Ggra4167.t1 ID=Ggra4167.t1|Name=Ggra4167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MVGCGDRVGYPLRGIRPHRGLRPLSALCDEVPIEQSGRRDGGSGGSGPGL
GRNTPLAGDLVYFDPWDYQEISREQAEEFRAAPREIPSDHPRGYVDSDNY
YHAYSGGDSMVDNDPDASGETVEDDGDEADAVGNDNQVGNAPAEPGSNTP
ADPNTGQSAAAVTTEQEDGPPPPSASAGSGNPSSGPLNEQEIIARFLRGA
GLSATEASGDVVEMADALANRLGGGAPPSGGSGSNH*
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mRNA from alignment at tig00000853_pilon:444008..444836-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4167.t1 ID=Ggra4167.t1|Name=Ggra4167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=829bp|location=Sequence derived from alignment at tig00000853_pilon:444008..444836- (Gracilaria gracilis GNS1m male)
ATGGTCGGTTGTGGTGACCGAGTGGGCTACCCGCTTCGCGGCATACGTCC
TCACCGAGGCCTACGACCATTATCGGCTTTGGTACGTACAACCCCGCCGG
CGGGCAGCCATCCGTAGCCTGGACTTGCGAATCCCCCTTGGGGGTACTGC
CAACGAGGAAGAAATGCTGGGGCTACTCGATTACATCTAGAACGTTCAGT
GCGACGAGGTTCCCATCGAACAGAGTGGCCGTCGAGACGGTGGTAGTGGC
GGTTCCGGTCCCGGACTCGGGCGCAATACTCCGCTCGCGGGCGACTTAGT
GTATTTCGACCCGTGGGACTACCAGGAAATCAGCCGCGAGCAAGCGGAAG
AATTCCGGGCTGCCCCGCGTGAAATCCCCAGCGACCACCCGCGAGGGTAC
GTCGACTCGGACAATTATTATCACGCTTACAGCGGGGGCGATTCAATGGT
GGATAACGACCCCGATGCATCGGGTGAGACGGTCGAAGACGACGGTGACG
AAGCCGACGCGGTCGGGAATGACAACCAAGTTGGTAACGCTCCGGCGGAG
CCGGGTTCGAATACTCCCGCTGATCCCAATACGGGGCAGTCCGCTGCGGC
GGTGACGACGGAACAAGAGGATGGTCCTCCTCCGCCTTCGGCGAGCGCTG
GATCAGGCAATCCCAGTTCTGGGCCGCTGAATGAGCAGGAGATCATTGCT
CGCTTCCTGCGTGGTGCAGGCCTCAGCGCCACCGAAGCTTCGGGTGATGT
CGTCGAAATGGCGGATGCCCTGGCGAACCGCCTCGGCGGGGGTGCTCCAC
CTAGTGGGGGTAGCGGCTCGAACCACTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:444008..444836-

>Ggra4167.t1 ID=Ggra4167.t1|Name=Ggra4167.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000853_pilon:444008..444836- (Gracilaria gracilis GNS1m male)
ATGGTCGGTTGTGGTGACCGAGTGGGCTACCCGCTTCGCGGCATACGTCC
TCACCGAGGCCTACGACCATTATCGGCTTTGTGCGACGAGGTTCCCATCG
AACAGAGTGGCCGTCGAGACGGTGGTAGTGGCGGTTCCGGTCCCGGACTC
GGGCGCAATACTCCGCTCGCGGGCGACTTAGTGTATTTCGACCCGTGGGA
CTACCAGGAAATCAGCCGCGAGCAAGCGGAAGAATTCCGGGCTGCCCCGC
GTGAAATCCCCAGCGACCACCCGCGAGGGTACGTCGACTCGGACAATTAT
TATCACGCTTACAGCGGGGGCGATTCAATGGTGGATAACGACCCCGATGC
ATCGGGTGAGACGGTCGAAGACGACGGTGACGAAGCCGACGCGGTCGGGA
ATGACAACCAAGTTGGTAACGCTCCGGCGGAGCCGGGTTCGAATACTCCC
GCTGATCCCAATACGGGGCAGTCCGCTGCGGCGGTGACGACGGAACAAGA
GGATGGTCCTCCTCCGCCTTCGGCGAGCGCTGGATCAGGCAATCCCAGTT
CTGGGCCGCTGAATGAGCAGGAGATCATTGCTCGCTTCCTGCGTGGTGCA
GGCCTCAGCGCCACCGAAGCTTCGGGTGATGTCGTCGAAATGGCGGATGC
CCTGGCGAACCGCCTCGGCGGGGGTGCTCCACCTAGTGGGGGTAGCGGCT
CGAACCACTAG
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