Ggra4007.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4007.t1
Unique NameGgra4007.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:327634..328617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4007Ggra4007Gracilaria gracilis GNS1m malegenetig00000908_pilon 327634..328617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4007.t1.stop1Ggra4007.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 327634..327636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4007.t1.CDS1Ggra4007.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 327634..328617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4007.t1.exon1Ggra4007.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 327634..328617 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4007.t1.start1Ggra4007.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 328615..328617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4007.t1Ggra4007.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 327634..328617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4007.t1 ID=Ggra4007.t1|Name=Ggra4007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=328bp
MPKGMAIRRPRSLEMHATIVDIPEGADVFKSLNDAADEAGYVPTIVLSGV
GLLSRAVLYVPNDEAIPEAMDIEQSLGVKLDLDGTKYPELHDLPRIRVDE
ARASGINVPEETRDFRSKPHWYSKQSFDKPLSLLYARGGRTYNRKRYRYH
MILSGSEERTFGRANSFVGEMLPGCVAKNPLQFVIGVSANMFKTNVQAWG
ITIEPGYDVIERMTCFLNARQNVGECFIVSADGLVSEAVLANICEAGEEE
QYYVRDESKPYHIEDISGIVNHVFGTSRIHATIVLNCEEPPCEAVGGRLI
KAIASLEKPVEIVLGEITDEKDMIHSE*
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spliced messenger RNA

>Ggra4007.t1 ID=Ggra4007.t1|Name=Ggra4007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000908_pilon:327634..328617- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAGGGAATGGCAATCAGGCGGCCCCGAAGTTTAGAAATGCATGC
TACGATTGTGGATATACCCGAAGGAGCTGATGTTTTCAAGTCTCTCAACG
ACGCTGCCGATGAAGCCGGTTACGTTCCAACTATTGTTCTCTCCGGAGTA
GGTCTCTTGTCTCGAGCAGTGCTATACGTACCGAACGATGAAGCGATCCC
TGAAGCAATGGATATCGAGCAATCACTTGGTGTCAAACTTGATCTTGATG
GCACAAAATATCCAGAGCTGCATGACCTACCAAGAATAAGAGTAGACGAA
GCTAGAGCGAGTGGAATCAATGTACCTGAAGAGACCCGAGATTTTCGCTC
TAAGCCACATTGGTACTCTAAACAGTCATTCGATAAACCACTGAGTCTCT
TGTATGCCCGAGGAGGAAGAACATATAACAGGAAACGCTATCGTTACCAT
ATGATTCTTTCGGGATCAGAAGAACGAACTTTCGGGAGGGCCAATAGCTT
TGTAGGCGAAATGTTGCCCGGTTGCGTTGCTAAAAACCCGCTGCAGTTTG
TAATCGGCGTATCTGCGAACATGTTTAAGACAAACGTTCAGGCATGGGGC
ATAACGATTGAACCAGGGTACGATGTTATCGAAAGGATGACATGCTTTTT
GAATGCAAGACAAAACGTTGGAGAATGTTTCATAGTCAGCGCAGACGGCC
TTGTATCAGAAGCTGTATTAGCAAATATTTGTGAAGCGGGAGAAGAAGAG
CAGTACTACGTTCGAGACGAAAGCAAGCCGTACCATATTGAGGATATATC
AGGCATTGTCAATCACGTATTTGGAACATCGAGAATACATGCCACGATTG
TTCTCAATTGCGAAGAACCGCCTTGTGAAGCAGTTGGGGGACGCTTGATT
AAAGCCATTGCTTCGTTGGAGAAGCCAGTTGAAATTGTTCTCGGTGAGAT
TACAGATGAAAAGGACATGATACATTCCGAGTAA
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protein sequence of Ggra4007.t1

>Ggra4007.t1 ID=Ggra4007.t1|Name=Ggra4007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MPKGMAIRRPRSLEMHATIVDIPEGADVFKSLNDAADEAGYVPTIVLSGV
GLLSRAVLYVPNDEAIPEAMDIEQSLGVKLDLDGTKYPELHDLPRIRVDE
ARASGINVPEETRDFRSKPHWYSKQSFDKPLSLLYARGGRTYNRKRYRYH
MILSGSEERTFGRANSFVGEMLPGCVAKNPLQFVIGVSANMFKTNVQAWG
ITIEPGYDVIERMTCFLNARQNVGECFIVSADGLVSEAVLANICEAGEEE
QYYVRDESKPYHIEDISGIVNHVFGTSRIHATIVLNCEEPPCEAVGGRLI
KAIASLEKPVEIVLGEITDEKDMIHSE*
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mRNA from alignment at tig00000908_pilon:327634..328617-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4007.t1 ID=Ggra4007.t1|Name=Ggra4007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000908_pilon:327634..328617- (Gracilaria gracilis GNS1m male)
ATGCCGAAGGGAATGGCAATCAGGCGGCCCCGAAGTTTAGAAATGCATGC
TACGATTGTGGATATACCCGAAGGAGCTGATGTTTTCAAGTCTCTCAACG
ACGCTGCCGATGAAGCCGGTTACGTTCCAACTATTGTTCTCTCCGGAGTA
GGTCTCTTGTCTCGAGCAGTGCTATACGTACCGAACGATGAAGCGATCCC
TGAAGCAATGGATATCGAGCAATCACTTGGTGTCAAACTTGATCTTGATG
GCACAAAATATCCAGAGCTGCATGACCTACCAAGAATAAGAGTAGACGAA
GCTAGAGCGAGTGGAATCAATGTACCTGAAGAGACCCGAGATTTTCGCTC
TAAGCCACATTGGTACTCTAAACAGTCATTCGATAAACCACTGAGTCTCT
TGTATGCCCGAGGAGGAAGAACATATAACAGGAAACGCTATCGTTACCAT
ATGATTCTTTCGGGATCAGAAGAACGAACTTTCGGGAGGGCCAATAGCTT
TGTAGGCGAAATGTTGCCCGGTTGCGTTGCTAAAAACCCGCTGCAGTTTG
TAATCGGCGTATCTGCGAACATGTTTAAGACAAACGTTCAGGCATGGGGC
ATAACGATTGAACCAGGGTACGATGTTATCGAAAGGATGACATGCTTTTT
GAATGCAAGACAAAACGTTGGAGAATGTTTCATAGTCAGCGCAGACGGCC
TTGTATCAGAAGCTGTATTAGCAAATATTTGTGAAGCGGGAGAAGAAGAG
CAGTACTACGTTCGAGACGAAAGCAAGCCGTACCATATTGAGGATATATC
AGGCATTGTCAATCACGTATTTGGAACATCGAGAATACATGCCACGATTG
TTCTCAATTGCGAAGAACCGCCTTGTGAAGCAGTTGGGGGACGCTTGATT
AAAGCCATTGCTTCGTTGGAGAAGCCAGTTGAAATTGTTCTCGGTGAGAT
TACAGATGAAAAGGACATGATACATTCCGAGTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:327634..328617-

>Ggra4007.t1 ID=Ggra4007.t1|Name=Ggra4007.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00000908_pilon:327634..328617- (Gracilaria gracilis GNS1m male)
ATGCCGAAGGGAATGGCAATCAGGCGGCCCCGAAGTTTAGAAATGCATGC
TACGATTGTGGATATACCCGAAGGAGCTGATGTTTTCAAGTCTCTCAACG
ACGCTGCCGATGAAGCCGGTTACGTTCCAACTATTGTTCTCTCCGGAGTA
GGTCTCTTGTCTCGAGCAGTGCTATACGTACCGAACGATGAAGCGATCCC
TGAAGCAATGGATATCGAGCAATCACTTGGTGTCAAACTTGATCTTGATG
GCACAAAATATCCAGAGCTGCATGACCTACCAAGAATAAGAGTAGACGAA
GCTAGAGCGAGTGGAATCAATGTACCTGAAGAGACCCGAGATTTTCGCTC
TAAGCCACATTGGTACTCTAAACAGTCATTCGATAAACCACTGAGTCTCT
TGTATGCCCGAGGAGGAAGAACATATAACAGGAAACGCTATCGTTACCAT
ATGATTCTTTCGGGATCAGAAGAACGAACTTTCGGGAGGGCCAATAGCTT
TGTAGGCGAAATGTTGCCCGGTTGCGTTGCTAAAAACCCGCTGCAGTTTG
TAATCGGCGTATCTGCGAACATGTTTAAGACAAACGTTCAGGCATGGGGC
ATAACGATTGAACCAGGGTACGATGTTATCGAAAGGATGACATGCTTTTT
GAATGCAAGACAAAACGTTGGAGAATGTTTCATAGTCAGCGCAGACGGCC
TTGTATCAGAAGCTGTATTAGCAAATATTTGTGAAGCGGGAGAAGAAGAG
CAGTACTACGTTCGAGACGAAAGCAAGCCGTACCATATTGAGGATATATC
AGGCATTGTCAATCACGTATTTGGAACATCGAGAATACATGCCACGATTG
TTCTCAATTGCGAAGAACCGCCTTGTGAAGCAGTTGGGGGACGCTTGATT
AAAGCCATTGCTTCGTTGGAGAAGCCAGTTGAAATTGTTCTCGGTGAGAT
TACAGATGAAAAGGACATGATACATTCCGAGTAA
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