Ggra4006.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4006.t1
Unique NameGgra4006.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:326342..326951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog136037.KDR10884
Preferred nameCETN1
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8
Max annot lvl33208|Metazoa
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0000922,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
Evalue1.27e-44
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota,38C1B@33154|Opisthokonta,3BB2J@33208|Metazoa,3D0FW@33213|Bilateria,41YPI@6656|Arthropoda,3SM11@50557|Insecta
DescriptionCalcium ion binding
COG categoryDZ
BRITEko00000,ko00001,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4006Ggra4006Gracilaria gracilis GNS1m malegenetig00000908_pilon 326342..326951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4006.t1Ggra4006.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 326342..326951 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4006.t1.start1Ggra4006.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 326342..326344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4006.t1.CDS1Ggra4006.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 326342..326347 +
Ggra4006.t1.CDS2Ggra4006.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 326436..326951 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4006.t1.exon1Ggra4006.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 326342..326347 +
Ggra4006.t1.exon2Ggra4006.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 326436..326951 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4006.t1.intron1Ggra4006.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 326348..326435 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4006.t1.stop1Ggra4006.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 326949..326951 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4006.t1 ID=Ggra4006.t1|Name=Ggra4006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MPDVELDIENTASRPIARRQELTEERKQEIREVFELFDSENTGMVEKRQL
RVLMRSLGYEPRKDQLARLIVACGISQRATQIKYDEFHALMEKMINERDI
QEEMMHAFSLFDTDDSGKITFQNLREVADQLGERMTDDELQEMIREADMD
KDGMVSATEFVRIMKKTSLWSAQ*
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spliced messenger RNA

>Ggra4006.t1 ID=Ggra4006.t1|Name=Ggra4006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000908_pilon:326342..326951+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGACGTTGAATTAGACATCGAGAACACTGCATCACGGCCCATAGC
TCGAAGGCAGGAACTCACAGAGGAGAGAAAGCAGGAGATTCGCGAAGTAT
TCGAACTGTTCGACTCTGAGAACACCGGAATGGTCGAGAAGAGGCAGCTA
CGCGTTTTGATGCGGTCTCTCGGATATGAGCCAAGAAAGGACCAATTGGC
TCGTCTCATAGTTGCATGCGGTATATCTCAACGAGCCACGCAGATCAAGT
ACGATGAGTTTCACGCGCTTATGGAAAAGATGATCAACGAGAGAGACATA
CAAGAGGAAATGATGCACGCCTTTTCCCTGTTTGATACGGACGACAGCGG
AAAGATTACATTCCAAAATCTCCGAGAAGTGGCCGATCAGCTCGGAGAAC
GAATGACCGATGACGAGTTGCAAGAGATGATAAGAGAGGCTGATATGGAC
AAAGATGGAATGGTCAGCGCAACTGAGTTCGTGCGCATCATGAAGAAGAC
ATCACTGTGGTCCGCGCAGTAG
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protein sequence of Ggra4006.t1

>Ggra4006.t1 ID=Ggra4006.t1|Name=Ggra4006.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MPDVELDIENTASRPIARRQELTEERKQEIREVFELFDSENTGMVEKRQL
RVLMRSLGYEPRKDQLARLIVACGISQRATQIKYDEFHALMEKMINERDI
QEEMMHAFSLFDTDDSGKITFQNLREVADQLGERMTDDELQEMIREADMD
KDGMVSATEFVRIMKKTSLWSAQ*
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mRNA from alignment at tig00000908_pilon:326342..326951+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4006.t1 ID=Ggra4006.t1|Name=Ggra4006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=610bp|location=Sequence derived from alignment at tig00000908_pilon:326342..326951+ (Gracilaria gracilis GNS1m male)
ATGCCTGTAAGCTTTTCACAGCCCCATGTTCCACGCCGGTAACCTCATTC
CCTAGCTCTCGTCTGCGACTAACATCTTTCTTTGCCGTGCATAGGACGTT
GAATTAGACATCGAGAACACTGCATCACGGCCCATAGCTCGAAGGCAGGA
ACTCACAGAGGAGAGAAAGCAGGAGATTCGCGAAGTATTCGAACTGTTCG
ACTCTGAGAACACCGGAATGGTCGAGAAGAGGCAGCTACGCGTTTTGATG
CGGTCTCTCGGATATGAGCCAAGAAAGGACCAATTGGCTCGTCTCATAGT
TGCATGCGGTATATCTCAACGAGCCACGCAGATCAAGTACGATGAGTTTC
ACGCGCTTATGGAAAAGATGATCAACGAGAGAGACATACAAGAGGAAATG
ATGCACGCCTTTTCCCTGTTTGATACGGACGACAGCGGAAAGATTACATT
CCAAAATCTCCGAGAAGTGGCCGATCAGCTCGGAGAACGAATGACCGATG
ACGAGTTGCAAGAGATGATAAGAGAGGCTGATATGGACAAAGATGGAATG
GTCAGCGCAACTGAGTTCGTGCGCATCATGAAGAAGACATCACTGTGGTC
CGCGCAGTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:326342..326951+

>Ggra4006.t1 ID=Ggra4006.t1|Name=Ggra4006.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000908_pilon:326342..326951+ (Gracilaria gracilis GNS1m male)
ATGCCTGACGTTGAATTAGACATCGAGAACACTGCATCACGGCCCATAGC
TCGAAGGCAGGAACTCACAGAGGAGAGAAAGCAGGAGATTCGCGAAGTAT
TCGAACTGTTCGACTCTGAGAACACCGGAATGGTCGAGAAGAGGCAGCTA
CGCGTTTTGATGCGGTCTCTCGGATATGAGCCAAGAAAGGACCAATTGGC
TCGTCTCATAGTTGCATGCGGTATATCTCAACGAGCCACGCAGATCAAGT
ACGATGAGTTTCACGCGCTTATGGAAAAGATGATCAACGAGAGAGACATA
CAAGAGGAAATGATGCACGCCTTTTCCCTGTTTGATACGGACGACAGCGG
AAAGATTACATTCCAAAATCTCCGAGAAGTGGCCGATCAGCTCGGAGAAC
GAATGACCGATGACGAGTTGCAAGAGATGATAAGAGAGGCTGATATGGAC
AAAGATGGAATGGTCAGCGCAACTGAGTTCGTGCGCATCATGAAGAAGAC
ATCACTGTGGTCCGCGCAGTAG
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