Ggra3992.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3992.t1
Unique Name	Ggra3992.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	630

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:300373..302262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10011207
PFAMs	DUF382,PSP
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12829
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1902494,GO:1990904
Evalue	3.04e-93
EggNOG OGs	COG5182@1\|root,KOG2330@2759\|Eukaryota,37RXM@33090\|Viridiplantae,3GENG@35493\|Streptophyta,4JMBU@91835\|fabids
Description	Splicing factor 3B subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3992	Ggra3992	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 300373..302262 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3992.t1.start1	Ggra3992.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 300373..300375 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3992.t1.CDS1	Ggra3992.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 300373..302262 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3992.t1.exon1	Ggra3992.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 300373..302262 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3992.t1.stop1	Ggra3992.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 302260..302262 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3992.t1	Ggra3992.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 300373..302262 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:300373..302262+
coding sequence from alignment at tig00000908_pilon:300373..302262+

mRNA sequence

>Ggra3992.t1 ID=Ggra3992.t1|Name=Ggra3992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp
MVPHADDLEAAKAAALRDLLSSAGADILQAADTAVELTEQTESDSNKVGG
NAEIQQNKDLSEKQAFADLKQERKDSNNESDAAAREARESQTKRSQIQPQ
KRTRRRRRPKSRTHQTPIEPSDEDEDDTDDAVEYVPEQIAVLDDAQQLAK
LDGADRSGDADNIDQVISSMRRFMQRGIPDEDAQPEQPNEDDANASKSEE
NALQTNGRAHVRAPEHANGQDAEGGKDGAQLKQMSRKKQKELRRYQISIL
KSLTNRPEAVDAWDVTAPDPFLLVHLKTWPNSVQVPSNWRQKRKYLQNKR
GMEKKAFQLPAYIADTGVGEMRSAQIEADQKKSLKQRQREKMRAKTGRGV
EIDHSRLRDAFFKYQTKPRLTSHGDIYYELRELEVDGSQFRPGFLSEELR
AALGVSEGDPPLWLVSMQRYGPPPGYPGLKIPGVNAPIPKGGNYGYHMGG
WGKPPVDEYGRPIYGDVFGEGLDFGRYDSRFDFDDHKKKKLWGELRKPGS
KVTVAVGVDEESEGSEQEGEDHADVGQLKGAAQVPTGNVQERVLREDEHA
THGESVRKGVEPGRLYTVLEDRRVSVGQNTIMGSSHVYDVSKNVGANADS
SREKVSDKRQRDGGEERRDVPVKRSKFKF*

spliced messenger RNA

>Ggra3992.t1 ID=Ggra3992.t1|Name=Ggra3992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000908_pilon:300373..302262+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCGCATGCCGATGACCTGGAAGCCGCAAAGGCTGCAGCACTGCG
TGACTTGCTATCCAGCGCTGGTGCAGATATCTTACAGGCAGCTGATACCG
CAGTGGAACTGACGGAGCAAACAGAGTCTGACAGCAACAAAGTCGGTGGG
AATGCGGAAATCCAACAGAATAAAGACCTCTCTGAAAAGCAAGCCTTTGC
TGACCTGAAGCAAGAACGCAAGGATAGCAATAACGAGTCAGACGCCGCCG
CTCGTGAAGCGAGAGAGAGTCAAACGAAGCGAAGTCAAATACAGCCGCAG
AAGAGAACGCGTCGAAGACGGCGCCCGAAATCGAGAACGCACCAAACGCC
AATAGAACCCTCAGATGAGGATGAAGACGATACTGATGATGCTGTGGAAT
ACGTTCCAGAGCAAATCGCTGTGCTTGATGATGCACAGCAATTGGCGAAA
CTAGATGGTGCGGATCGAAGCGGTGACGCCGATAACATAGATCAAGTCAT
ATCTTCTATGCGACGTTTTATGCAGCGTGGCATCCCAGACGAGGATGCAC
AACCCGAACAGCCAAACGAGGACGATGCGAATGCGTCCAAGTCTGAAGAA
AATGCGCTTCAAACCAACGGCAGAGCACATGTACGCGCCCCAGAACACGC
CAATGGACAGGATGCTGAGGGTGGTAAAGACGGGGCGCAACTCAAACAGA
TGTCAAGAAAGAAGCAAAAAGAGCTTCGACGATATCAGATCTCAATACTA
AAATCACTAACAAACCGACCGGAAGCTGTAGATGCATGGGATGTTACAGC
TCCCGACCCATTTCTTCTTGTGCATCTCAAGACATGGCCTAATTCCGTGC
AAGTGCCCAGCAACTGGCGTCAGAAACGTAAGTATCTGCAGAACAAACGC
GGAATGGAGAAGAAGGCGTTTCAACTTCCAGCGTACATTGCTGATACTGG
CGTCGGGGAAATGCGATCAGCACAAATAGAAGCTGACCAGAAAAAGAGTT
TGAAGCAGAGACAGCGAGAGAAGATGAGAGCAAAGACTGGACGAGGCGTT
GAGATTGATCACTCGCGATTACGTGATGCGTTCTTCAAATACCAGACAAA
GCCCAGGCTAACTTCTCATGGGGATATATACTATGAGTTACGCGAGCTTG
AAGTTGATGGTTCACAGTTTCGACCTGGCTTTTTGAGTGAGGAACTACGC
GCTGCACTTGGTGTTTCAGAAGGTGACCCCCCGCTTTGGCTTGTAAGTAT
GCAAAGATATGGCCCTCCGCCAGGGTATCCTGGGCTGAAAATACCGGGCG
TGAATGCACCGATCCCGAAGGGGGGTAACTATGGATATCACATGGGAGGT
TGGGGTAAACCGCCAGTAGACGAATATGGAAGGCCAATATATGGAGATGT
GTTTGGGGAAGGGTTGGACTTTGGAAGATACGATTCTCGGTTTGACTTCG
ATGACCATAAAAAGAAGAAGCTGTGGGGAGAGTTGAGAAAGCCTGGAAGC
AAAGTCACTGTGGCAGTTGGAGTTGATGAGGAATCCGAAGGTAGTGAACA
AGAGGGCGAAGACCATGCAGATGTGGGGCAATTGAAGGGGGCAGCACAAG
TGCCAACCGGAAACGTGCAAGAAAGAGTTTTGCGGGAAGATGAACACGCC
ACGCATGGTGAAAGTGTTCGCAAAGGTGTAGAACCAGGGAGATTGTACAC
TGTGTTGGAAGACAGGAGGGTATCAGTTGGCCAAAACACTATAATGGGGT
CTTCCCATGTTTACGATGTTAGCAAAAACGTTGGTGCGAACGCAGACTCT
TCAAGAGAGAAGGTTAGCGATAAGAGACAACGAGATGGTGGTGAGGAGAG
ACGTGACGTCCCAGTTAAGCGGAGTAAATTTAAGTTCTGA

protein sequence of Ggra3992.t1

>Ggra3992.t1 ID=Ggra3992.t1|Name=Ggra3992.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=630bp
MVPHADDLEAAKAAALRDLLSSAGADILQAADTAVELTEQTESDSNKVGG
NAEIQQNKDLSEKQAFADLKQERKDSNNESDAAAREARESQTKRSQIQPQ
KRTRRRRRPKSRTHQTPIEPSDEDEDDTDDAVEYVPEQIAVLDDAQQLAK
LDGADRSGDADNIDQVISSMRRFMQRGIPDEDAQPEQPNEDDANASKSEE
NALQTNGRAHVRAPEHANGQDAEGGKDGAQLKQMSRKKQKELRRYQISIL
KSLTNRPEAVDAWDVTAPDPFLLVHLKTWPNSVQVPSNWRQKRKYLQNKR
GMEKKAFQLPAYIADTGVGEMRSAQIEADQKKSLKQRQREKMRAKTGRGV
EIDHSRLRDAFFKYQTKPRLTSHGDIYYELRELEVDGSQFRPGFLSEELR
AALGVSEGDPPLWLVSMQRYGPPPGYPGLKIPGVNAPIPKGGNYGYHMGG
WGKPPVDEYGRPIYGDVFGEGLDFGRYDSRFDFDDHKKKKLWGELRKPGS
KVTVAVGVDEESEGSEQEGEDHADVGQLKGAAQVPTGNVQERVLREDEHA
THGESVRKGVEPGRLYTVLEDRRVSVGQNTIMGSSHVYDVSKNVGANADS
SREKVSDKRQRDGGEERRDVPVKRSKFKF*

mRNA from alignment at tig00000908_pilon:300373..302262+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3992.t1 ID=Ggra3992.t1|Name=Ggra3992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000908_pilon:300373..302262+ (Gracilaria gracilis GNS1m male)
ATGGTTCCGCATGCCGATGACCTGGAAGCCGCAAAGGCTGCAGCACTGCG
TGACTTGCTATCCAGCGCTGGTGCAGATATCTTACAGGCAGCTGATACCG
CAGTGGAACTGACGGAGCAAACAGAGTCTGACAGCAACAAAGTCGGTGGG
AATGCGGAAATCCAACAGAATAAAGACCTCTCTGAAAAGCAAGCCTTTGC
TGACCTGAAGCAAGAACGCAAGGATAGCAATAACGAGTCAGACGCCGCCG
CTCGTGAAGCGAGAGAGAGTCAAACGAAGCGAAGTCAAATACAGCCGCAG
AAGAGAACGCGTCGAAGACGGCGCCCGAAATCGAGAACGCACCAAACGCC
AATAGAACCCTCAGATGAGGATGAAGACGATACTGATGATGCTGTGGAAT
ACGTTCCAGAGCAAATCGCTGTGCTTGATGATGCACAGCAATTGGCGAAA
CTAGATGGTGCGGATCGAAGCGGTGACGCCGATAACATAGATCAAGTCAT
ATCTTCTATGCGACGTTTTATGCAGCGTGGCATCCCAGACGAGGATGCAC
AACCCGAACAGCCAAACGAGGACGATGCGAATGCGTCCAAGTCTGAAGAA
AATGCGCTTCAAACCAACGGCAGAGCACATGTACGCGCCCCAGAACACGC
CAATGGACAGGATGCTGAGGGTGGTAAAGACGGGGCGCAACTCAAACAGA
TGTCAAGAAAGAAGCAAAAAGAGCTTCGACGATATCAGATCTCAATACTA
AAATCACTAACAAACCGACCGGAAGCTGTAGATGCATGGGATGTTACAGC
TCCCGACCCATTTCTTCTTGTGCATCTCAAGACATGGCCTAATTCCGTGC
AAGTGCCCAGCAACTGGCGTCAGAAACGTAAGTATCTGCAGAACAAACGC
GGAATGGAGAAGAAGGCGTTTCAACTTCCAGCGTACATTGCTGATACTGG
CGTCGGGGAAATGCGATCAGCACAAATAGAAGCTGACCAGAAAAAGAGTT
TGAAGCAGAGACAGCGAGAGAAGATGAGAGCAAAGACTGGACGAGGCGTT
GAGATTGATCACTCGCGATTACGTGATGCGTTCTTCAAATACCAGACAAA
GCCCAGGCTAACTTCTCATGGGGATATATACTATGAGTTACGCGAGCTTG
AAGTTGATGGTTCACAGTTTCGACCTGGCTTTTTGAGTGAGGAACTACGC
GCTGCACTTGGTGTTTCAGAAGGTGACCCCCCGCTTTGGCTTGTAAGTAT
GCAAAGATATGGCCCTCCGCCAGGGTATCCTGGGCTGAAAATACCGGGCG
TGAATGCACCGATCCCGAAGGGGGGTAACTATGGATATCACATGGGAGGT
TGGGGTAAACCGCCAGTAGACGAATATGGAAGGCCAATATATGGAGATGT
GTTTGGGGAAGGGTTGGACTTTGGAAGATACGATTCTCGGTTTGACTTCG
ATGACCATAAAAAGAAGAAGCTGTGGGGAGAGTTGAGAAAGCCTGGAAGC
AAAGTCACTGTGGCAGTTGGAGTTGATGAGGAATCCGAAGGTAGTGAACA
AGAGGGCGAAGACCATGCAGATGTGGGGCAATTGAAGGGGGCAGCACAAG
TGCCAACCGGAAACGTGCAAGAAAGAGTTTTGCGGGAAGATGAACACGCC
ACGCATGGTGAAAGTGTTCGCAAAGGTGTAGAACCAGGGAGATTGTACAC
TGTGTTGGAAGACAGGAGGGTATCAGTTGGCCAAAACACTATAATGGGGT
CTTCCCATGTTTACGATGTTAGCAAAAACGTTGGTGCGAACGCAGACTCT
TCAAGAGAGAAGGTTAGCGATAAGAGACAACGAGATGGTGGTGAGGAGAG
ACGTGACGTCCCAGTTAAGCGGAGTAAATTTAAGTTCTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:300373..302262+

>Ggra3992.t1 ID=Ggra3992.t1|Name=Ggra3992.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000908_pilon:300373..302262+ (Gracilaria gracilis GNS1m male)
ATGGTTCCGCATGCCGATGACCTGGAAGCCGCAAAGGCTGCAGCACTGCG
TGACTTGCTATCCAGCGCTGGTGCAGATATCTTACAGGCAGCTGATACCG
CAGTGGAACTGACGGAGCAAACAGAGTCTGACAGCAACAAAGTCGGTGGG
AATGCGGAAATCCAACAGAATAAAGACCTCTCTGAAAAGCAAGCCTTTGC
TGACCTGAAGCAAGAACGCAAGGATAGCAATAACGAGTCAGACGCCGCCG
CTCGTGAAGCGAGAGAGAGTCAAACGAAGCGAAGTCAAATACAGCCGCAG
AAGAGAACGCGTCGAAGACGGCGCCCGAAATCGAGAACGCACCAAACGCC
AATAGAACCCTCAGATGAGGATGAAGACGATACTGATGATGCTGTGGAAT
ACGTTCCAGAGCAAATCGCTGTGCTTGATGATGCACAGCAATTGGCGAAA
CTAGATGGTGCGGATCGAAGCGGTGACGCCGATAACATAGATCAAGTCAT
ATCTTCTATGCGACGTTTTATGCAGCGTGGCATCCCAGACGAGGATGCAC
AACCCGAACAGCCAAACGAGGACGATGCGAATGCGTCCAAGTCTGAAGAA
AATGCGCTTCAAACCAACGGCAGAGCACATGTACGCGCCCCAGAACACGC
CAATGGACAGGATGCTGAGGGTGGTAAAGACGGGGCGCAACTCAAACAGA
TGTCAAGAAAGAAGCAAAAAGAGCTTCGACGATATCAGATCTCAATACTA
AAATCACTAACAAACCGACCGGAAGCTGTAGATGCATGGGATGTTACAGC
TCCCGACCCATTTCTTCTTGTGCATCTCAAGACATGGCCTAATTCCGTGC
AAGTGCCCAGCAACTGGCGTCAGAAACGTAAGTATCTGCAGAACAAACGC
GGAATGGAGAAGAAGGCGTTTCAACTTCCAGCGTACATTGCTGATACTGG
CGTCGGGGAAATGCGATCAGCACAAATAGAAGCTGACCAGAAAAAGAGTT
TGAAGCAGAGACAGCGAGAGAAGATGAGAGCAAAGACTGGACGAGGCGTT
GAGATTGATCACTCGCGATTACGTGATGCGTTCTTCAAATACCAGACAAA
GCCCAGGCTAACTTCTCATGGGGATATATACTATGAGTTACGCGAGCTTG
AAGTTGATGGTTCACAGTTTCGACCTGGCTTTTTGAGTGAGGAACTACGC
GCTGCACTTGGTGTTTCAGAAGGTGACCCCCCGCTTTGGCTTGTAAGTAT
GCAAAGATATGGCCCTCCGCCAGGGTATCCTGGGCTGAAAATACCGGGCG
TGAATGCACCGATCCCGAAGGGGGGTAACTATGGATATCACATGGGAGGT
TGGGGTAAACCGCCAGTAGACGAATATGGAAGGCCAATATATGGAGATGT
GTTTGGGGAAGGGTTGGACTTTGGAAGATACGATTCTCGGTTTGACTTCG
ATGACCATAAAAAGAAGAAGCTGTGGGGAGAGTTGAGAAAGCCTGGAAGC
AAAGTCACTGTGGCAGTTGGAGTTGATGAGGAATCCGAAGGTAGTGAACA
AGAGGGCGAAGACCATGCAGATGTGGGGCAATTGAAGGGGGCAGCACAAG
TGCCAACCGGAAACGTGCAAGAAAGAGTTTTGCGGGAAGATGAACACGCC
ACGCATGGTGAAAGTGTTCGCAAAGGTGTAGAACCAGGGAGATTGTACAC
TGTGTTGGAAGACAGGAGGGTATCAGTTGGCCAAAACACTATAATGGGGT
CTTCCCATGTTTACGATGTTAGCAAAAACGTTGGTGCGAACGCAGACTCT
TCAAGAGAGAAGGTTAGCGATAAGAGACAACGAGATGGTGGTGAGGAGAG
ACGTGACGTCCCAGTTAAGCGGAGTAAATTTAAGTTCTGA