Ggra3964.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3964.t1
Unique Name	Ggra3964.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:227829..228950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	41431.PCC8801_4529
Preferred name	cpeC
PFAMs	CpcD,PBS_linker_poly
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K05378
KEGG Pathway	ko00196,ko01100,map00196,map01100
Evalue	1.14e-60
EggNOG OGs	COG0237@1\|root,COG0237@2\|Bacteria,1G05P@1117\|Cyanobacteria,3KHGA@43988\|Cyanothece
Description	Belongs to the phycobilisome linker protein family
COG category	H
BRITE	ko00000,ko00001,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3964	Ggra3964	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 227829..228950 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3964.t1.start1	Ggra3964.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 227829..227831 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3964.t1.CDS1	Ggra3964.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 227829..228950 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3964.t1.exon1	Ggra3964.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 227829..228950 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3964.t1.stop1	Ggra3964.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 228948..228950 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3964.t1	Ggra3964.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 227829..228950 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:227829..228950+
coding sequence from alignment at tig00000908_pilon:227829..228950+

mRNA sequence

>Ggra3964.t1 ID=Ggra3964.t1|Name=Ggra3964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MAFVPVLSLRPASAPLASSFAGSSLRSAAPAAPSRFTARLGTVLGNSSLD
KLGLDKFTERFVVEEAGRPAGFSAEYEVYIQAIYRQVFGNAYIMESEREE
MKKFESEFRDLRLTVKDFCRALGKTYQYRKRFFDGRPLYGAIELNFKHFL
GRTPDGLEQYRAKSAVYDASGYDAFIDAFFDDGEYDAFFDEYRVPYYRGH
LTTSRLSMCAFTHMFQVVRGASTSDKANPRTMTNKITLNRAGIQSIPLAV
VAPGADGCTFLAPDASSGSWQNGVSGLTMARTSHGTRQQDGKMFRIEVTR
LSQQGATNGAAGVTLRSRSGRFYKTKNASSGSKLSDFRRANAVYLVPFSE
LSDTYVKIHKNGGVIASITPVTG*

spliced messenger RNA

>Ggra3964.t1 ID=Ggra3964.t1|Name=Ggra3964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000908_pilon:227829..228950+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTCCCCGTCCTCTCCTTGCGTCCGGCCTCCGCGCCGCTGGC
CTCCTCCTTCGCTGGGTCTTCGCTGCGCAGCGCCGCCCCAGCCGCGCCAT
CGCGCTTCACCGCGCGTCTCGGAACCGTGCTTGGAAATTCCTCCTTGGAT
AAGCTCGGTCTCGACAAGTTCACAGAGCGCTTTGTCGTCGAGGAGGCCGG
TCGACCTGCAGGTTTTTCCGCCGAGTATGAGGTGTACATCCAGGCTATTT
ACCGTCAAGTGTTTGGTAACGCCTATATCATGGAGTCCGAGCGTGAGGAA
ATGAAGAAATTCGAATCCGAGTTCCGCGACTTGCGCTTGACTGTCAAGGA
TTTCTGCCGCGCTCTGGGTAAGACTTATCAGTATCGCAAGCGATTCTTTG
ACGGCCGTCCCCTCTACGGCGCCATTGAGCTCAATTTCAAGCACTTCCTC
GGTCGCACTCCGGACGGTTTGGAGCAATATCGAGCCAAGTCTGCTGTGTA
CGATGCTAGCGGATACGATGCCTTCATTGACGCTTTCTTCGATGATGGCG
AGTACGATGCCTTCTTCGATGAGTATCGCGTGCCGTATTATCGTGGACAT
CTCACTACCTCCAGGCTTTCCATGTGTGCTTTCACACACATGTTCCAGGT
TGTTCGCGGCGCATCCACTTCTGACAAGGCCAATCCTCGCACTATGACCA
ACAAGATCACGCTCAACCGGGCTGGAATTCAATCTATTCCCCTGGCTGTT
GTTGCTCCAGGAGCTGACGGCTGCACTTTCCTTGCACCCGACGCGTCCTC
TGGATCGTGGCAGAACGGCGTCTCTGGACTCACCATGGCCCGAACTTCGC
ACGGTACTCGTCAACAAGACGGAAAGATGTTCCGTATCGAAGTCACCAGG
CTCTCACAACAGGGTGCTACTAACGGTGCTGCTGGCGTCACACTGCGCTC
TCGCTCGGGCAGATTTTACAAGACGAAGAATGCCAGCTCCGGAAGCAAGC
TGTCTGACTTCCGTCGTGCCAACGCAGTGTATCTGGTACCCTTCTCAGAG
CTCTCGGACACCTACGTTAAGATTCATAAGAACGGCGGCGTGATTGCTAG
CATCACCCCAGTCACTGGATAG

protein sequence of Ggra3964.t1

>Ggra3964.t1 ID=Ggra3964.t1|Name=Ggra3964.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MAFVPVLSLRPASAPLASSFAGSSLRSAAPAAPSRFTARLGTVLGNSSLD
KLGLDKFTERFVVEEAGRPAGFSAEYEVYIQAIYRQVFGNAYIMESEREE
MKKFESEFRDLRLTVKDFCRALGKTYQYRKRFFDGRPLYGAIELNFKHFL
GRTPDGLEQYRAKSAVYDASGYDAFIDAFFDDGEYDAFFDEYRVPYYRGH
LTTSRLSMCAFTHMFQVVRGASTSDKANPRTMTNKITLNRAGIQSIPLAV
VAPGADGCTFLAPDASSGSWQNGVSGLTMARTSHGTRQQDGKMFRIEVTR
LSQQGATNGAAGVTLRSRSGRFYKTKNASSGSKLSDFRRANAVYLVPFSE
LSDTYVKIHKNGGVIASITPVTG*

mRNA from alignment at tig00000908_pilon:227829..228950+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3964.t1 ID=Ggra3964.t1|Name=Ggra3964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000908_pilon:227829..228950+ (Gracilaria gracilis GNS1m male)
ATGGCATTCGTCCCCGTCCTCTCCTTGCGTCCGGCCTCCGCGCCGCTGGC
CTCCTCCTTCGCTGGGTCTTCGCTGCGCAGCGCCGCCCCAGCCGCGCCAT
CGCGCTTCACCGCGCGTCTCGGAACCGTGCTTGGAAATTCCTCCTTGGAT
AAGCTCGGTCTCGACAAGTTCACAGAGCGCTTTGTCGTCGAGGAGGCCGG
TCGACCTGCAGGTTTTTCCGCCGAGTATGAGGTGTACATCCAGGCTATTT
ACCGTCAAGTGTTTGGTAACGCCTATATCATGGAGTCCGAGCGTGAGGAA
ATGAAGAAATTCGAATCCGAGTTCCGCGACTTGCGCTTGACTGTCAAGGA
TTTCTGCCGCGCTCTGGGTAAGACTTATCAGTATCGCAAGCGATTCTTTG
ACGGCCGTCCCCTCTACGGCGCCATTGAGCTCAATTTCAAGCACTTCCTC
GGTCGCACTCCGGACGGTTTGGAGCAATATCGAGCCAAGTCTGCTGTGTA
CGATGCTAGCGGATACGATGCCTTCATTGACGCTTTCTTCGATGATGGCG
AGTACGATGCCTTCTTCGATGAGTATCGCGTGCCGTATTATCGTGGACAT
CTCACTACCTCCAGGCTTTCCATGTGTGCTTTCACACACATGTTCCAGGT
TGTTCGCGGCGCATCCACTTCTGACAAGGCCAATCCTCGCACTATGACCA
ACAAGATCACGCTCAACCGGGCTGGAATTCAATCTATTCCCCTGGCTGTT
GTTGCTCCAGGAGCTGACGGCTGCACTTTCCTTGCACCCGACGCGTCCTC
TGGATCGTGGCAGAACGGCGTCTCTGGACTCACCATGGCCCGAACTTCGC
ACGGTACTCGTCAACAAGACGGAAAGATGTTCCGTATCGAAGTCACCAGG
CTCTCACAACAGGGTGCTACTAACGGTGCTGCTGGCGTCACACTGCGCTC
TCGCTCGGGCAGATTTTACAAGACGAAGAATGCCAGCTCCGGAAGCAAGC
TGTCTGACTTCCGTCGTGCCAACGCAGTGTATCTGGTACCCTTCTCAGAG
CTCTCGGACACCTACGTTAAGATTCATAAGAACGGCGGCGTGATTGCTAG
CATCACCCCAGTCACTGGATAG

Coding sequence (CDS) from alignment at tig00000908_pilon:227829..228950+

>Ggra3964.t1 ID=Ggra3964.t1|Name=Ggra3964.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000908_pilon:227829..228950+ (Gracilaria gracilis GNS1m male)
ATGGCATTCGTCCCCGTCCTCTCCTTGCGTCCGGCCTCCGCGCCGCTGGC
CTCCTCCTTCGCTGGGTCTTCGCTGCGCAGCGCCGCCCCAGCCGCGCCAT
CGCGCTTCACCGCGCGTCTCGGAACCGTGCTTGGAAATTCCTCCTTGGAT
AAGCTCGGTCTCGACAAGTTCACAGAGCGCTTTGTCGTCGAGGAGGCCGG
TCGACCTGCAGGTTTTTCCGCCGAGTATGAGGTGTACATCCAGGCTATTT
ACCGTCAAGTGTTTGGTAACGCCTATATCATGGAGTCCGAGCGTGAGGAA
ATGAAGAAATTCGAATCCGAGTTCCGCGACTTGCGCTTGACTGTCAAGGA
TTTCTGCCGCGCTCTGGGTAAGACTTATCAGTATCGCAAGCGATTCTTTG
ACGGCCGTCCCCTCTACGGCGCCATTGAGCTCAATTTCAAGCACTTCCTC
GGTCGCACTCCGGACGGTTTGGAGCAATATCGAGCCAAGTCTGCTGTGTA
CGATGCTAGCGGATACGATGCCTTCATTGACGCTTTCTTCGATGATGGCG
AGTACGATGCCTTCTTCGATGAGTATCGCGTGCCGTATTATCGTGGACAT
CTCACTACCTCCAGGCTTTCCATGTGTGCTTTCACACACATGTTCCAGGT
TGTTCGCGGCGCATCCACTTCTGACAAGGCCAATCCTCGCACTATGACCA
ACAAGATCACGCTCAACCGGGCTGGAATTCAATCTATTCCCCTGGCTGTT
GTTGCTCCAGGAGCTGACGGCTGCACTTTCCTTGCACCCGACGCGTCCTC
TGGATCGTGGCAGAACGGCGTCTCTGGACTCACCATGGCCCGAACTTCGC
ACGGTACTCGTCAACAAGACGGAAAGATGTTCCGTATCGAAGTCACCAGG
CTCTCACAACAGGGTGCTACTAACGGTGCTGCTGGCGTCACACTGCGCTC
TCGCTCGGGCAGATTTTACAAGACGAAGAATGCCAGCTCCGGAAGCAAGC
TGTCTGACTTCCGTCGTGCCAACGCAGTGTATCTGGTACCCTTCTCAGAG
CTCTCGGACACCTACGTTAAGATTCATAAGAACGGCGGCGTGATTGCTAG
CATCACCCCAGTCACTGGATAG