Ggra3949.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3949.t1
Unique NameGgra3949.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:192518..193162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog323261.Noc_0989
PFAMsAhpC-TSA
Max annot lvl135613|Chromatiales
Evalue8.47e-81
EggNOG OGsCOG1225@1|root,COG1225@2|Bacteria,1R9YF@1224|Proteobacteria,1S37E@1236|Gammaproteobacteria,1WWWB@135613|Chromatiales
DescriptionPFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3949Ggra3949Gracilaria gracilis GNS1m malegenetig00000908_pilon 192518..193162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3949.t1Ggra3949.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 192518..193162 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3949.t1.stop1Ggra3949.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 192518..192520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3949.t1.CDS1Ggra3949.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 192518..192692 -
Ggra3949.t1.CDS2Ggra3949.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 192774..193162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3949.t1.exon1Ggra3949.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 192518..192692 -
Ggra3949.t1.exon2Ggra3949.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 192774..193162 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3949.t1.intron1Ggra3949.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 192693..192773 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3949.t1.start1Ggra3949.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 193160..193162 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3949.t1 ID=Ggra3949.t1|Name=Ggra3949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MLPLGTKAPDFELQEPLTGKKLSLADVKGENGLLLVFICNHCPFVIHLQN
ELAALGRDLKAKGVGMIGISSNDVKKYPADGPDEMAKLASAKFNTFPYVF
DETQEVAKAYRAACTPDIYLFDKDMNLAYRGQIDDSRPGNGRPVTGKTIR
EAVDLMVEGKQYPEESMRPSIGCNIKWVEGNEPDYFG*
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spliced messenger RNA

>Ggra3949.t1 ID=Ggra3949.t1|Name=Ggra3949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000908_pilon:192518..193162- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCTTGGGCACCAAGGCGCCAGACTTCGAACTACAAGAGCCACT
AACAGGCAAGAAACTATCTCTTGCCGATGTTAAGGGTGAAAATGGTCTTC
TTTTAGTCTTTATCTGCAATCACTGCCCGTTCGTTATTCACTTACAGAAT
GAGCTAGCTGCTCTAGGGCGAGACTTGAAAGCGAAAGGCGTTGGAATGAT
TGGGATCTCCAGCAATGACGTCAAGAAGTACCCCGCTGATGGCCCAGACG
AAATGGCCAAATTGGCTTCAGCAAAGTTTAACACCTTCCCGTATGTATTC
GACGAGACTCAGGAGGTTGCAAAAGCATACCGTGCTGCATGTACGCCGGA
CATCTATTTGTTCGACAAAGATATGAACCTTGCATACAGGGGGCAGATTG
ATGACTCTAGGCCGGGTAATGGAAGACCGGTGACAGGCAAGACTATTCGA
GAGGCCGTTGATCTCATGGTCGAAGGAAAACAGTATCCTGAAGAATCTAT
GAGGCCGTCTATTGGATGCAACATCAAGTGGGTCGAAGGAAATGAACCTG
ACTACTTCGGATAA
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protein sequence of Ggra3949.t1

>Ggra3949.t1 ID=Ggra3949.t1|Name=Ggra3949.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MLPLGTKAPDFELQEPLTGKKLSLADVKGENGLLLVFICNHCPFVIHLQN
ELAALGRDLKAKGVGMIGISSNDVKKYPADGPDEMAKLASAKFNTFPYVF
DETQEVAKAYRAACTPDIYLFDKDMNLAYRGQIDDSRPGNGRPVTGKTIR
EAVDLMVEGKQYPEESMRPSIGCNIKWVEGNEPDYFG*
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mRNA from alignment at tig00000908_pilon:192518..193162-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3949.t1 ID=Ggra3949.t1|Name=Ggra3949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000908_pilon:192518..193162- (Gracilaria gracilis GNS1m male)
ATGCTTCCCTTGGGCACCAAGGCGCCAGACTTCGAACTACAAGAGCCACT
AACAGGCAAGAAACTATCTCTTGCCGATGTTAAGGGTGAAAATGGTCTTC
TTTTAGTCTTTATCTGCAATCACTGCCCGTTCGTTATTCACTTACAGAAT
GAGCTAGCTGCTCTAGGGCGAGACTTGAAAGCGAAAGGCGTTGGAATGAT
TGGGATCTCCAGCAATGACGTCAAGAAGTACCCCGCTGATGGCCCAGACG
AAATGGCCAAATTGGCTTCAGCAAAGTTTAACACCTTCCCGTATGTATTC
GACGAGACTCAGGAGGTTGCAAAAGCATACCGTGCTGCATGTACGCCGGA
CATCTATTTGTTCGACAAAGATATGAACCTTGCATACAGGTAAGTCTTGG
CTATTCGCATCACCTCATGAATTCATTCGATTGTACTGATGTGAAAACCT
GTTTTCGCTGTCCGTCGCAGGGGGCAGATTGATGACTCTAGGCCGGGTAA
TGGAAGACCGGTGACAGGCAAGACTATTCGAGAGGCCGTTGATCTCATGG
TCGAAGGAAAACAGTATCCTGAAGAATCTATGAGGCCGTCTATTGGATGC
AACATCAAGTGGGTCGAAGGAAATGAACCTGACTACTTCGGATAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:192518..193162-

>Ggra3949.t1 ID=Ggra3949.t1|Name=Ggra3949.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000908_pilon:192518..193162- (Gracilaria gracilis GNS1m male)
ATGCTTCCCTTGGGCACCAAGGCGCCAGACTTCGAACTACAAGAGCCACT
AACAGGCAAGAAACTATCTCTTGCCGATGTTAAGGGTGAAAATGGTCTTC
TTTTAGTCTTTATCTGCAATCACTGCCCGTTCGTTATTCACTTACAGAAT
GAGCTAGCTGCTCTAGGGCGAGACTTGAAAGCGAAAGGCGTTGGAATGAT
TGGGATCTCCAGCAATGACGTCAAGAAGTACCCCGCTGATGGCCCAGACG
AAATGGCCAAATTGGCTTCAGCAAAGTTTAACACCTTCCCGTATGTATTC
GACGAGACTCAGGAGGTTGCAAAAGCATACCGTGCTGCATGTACGCCGGA
CATCTATTTGTTCGACAAAGATATGAACCTTGCATACAGGGGGCAGATTG
ATGACTCTAGGCCGGGTAATGGAAGACCGGTGACAGGCAAGACTATTCGA
GAGGCCGTTGATCTCATGGTCGAAGGAAAACAGTATCCTGAAGAATCTAT
GAGGCCGTCTATTGGATGCAACATCAAGTGGGTCGAAGGAAATGAACCTG
ACTACTTCGGATAA
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