Ggra3942.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3942.t1
Unique NameGgra3942.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:174090..174770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4558.Sb10g002430.1
PFAMsBud13
Max annot lvl35493|Streptophyta
KEGG koko:K13106
Evalue1.13e-09
EggNOG OGsKOG2654@1|root,KOG2654@2759|Eukaryota,37PGK@33090|Viridiplantae,3GE78@35493|Streptophyta,3KNUT@4447|Liliopsida,3I8IZ@38820|Poales
DescriptionPre-mRNA-splicing factor of RES complex
COG categoryS
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3942Ggra3942Gracilaria gracilis GNS1m malegenetig00000908_pilon 174090..174770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3942.t1.start1Ggra3942.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 174090..174092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3942.t1.CDS1Ggra3942.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 174090..174770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3942.t1.exon1Ggra3942.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 174090..174770 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3942.t1.stop1Ggra3942.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 174768..174770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3942.t1Ggra3942.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 174090..174770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3942.t1 ID=Ggra3942.t1|Name=Ggra3942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=227bp
MYPLSNEKNSRGCSSTNIEGDNNTKIDEGKVKETSRKYDIPFDTGNVSDA
SPPRRPRPQPASASRQTRVITSKRDQDEKEVSDASPPRRRVRSRDSGVYP
SPAETRPRKRSRSIEGRRFSTDKMARRTSHSSATDDDLISVRSGANPVAS
SSPRERLGFHRQTATRFPHFRSPFEQRAPPNRYGIRPGPRWDGVDRTNGF
EVRLENMRAEKRSIDYQAYRASVADL*
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spliced messenger RNA

>Ggra3942.t1 ID=Ggra3942.t1|Name=Ggra3942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000908_pilon:174090..174770+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCTTTATCAAACGAAAAGAATTCAAGAGGTTGTTCTTCCACCAA
TATTGAGGGCGACAATAACACCAAGATTGATGAGGGAAAAGTGAAAGAGA
CGTCTCGAAAGTATGACATCCCATTTGACACGGGTAATGTGAGTGACGCA
TCTCCTCCTCGTCGCCCTCGTCCGCAACCTGCATCTGCATCTCGTCAGAC
GAGAGTTATAACTTCAAAACGTGATCAAGACGAAAAGGAAGTAAGTGATG
CATCTCCCCCACGTCGTCGTGTTCGAAGTCGAGACTCTGGTGTGTACCCT
AGCCCAGCCGAAACTCGACCCCGTAAACGATCGAGGTCAATCGAAGGGAG
AAGGTTTTCAACGGATAAGATGGCGAGACGCACGTCTCACAGCTCAGCCA
CTGACGACGACTTGATTTCGGTTCGCTCCGGCGCGAATCCGGTTGCCTCA
AGTTCACCTCGTGAAAGACTCGGTTTCCATCGCCAGACTGCTACACGATT
CCCACATTTTCGAAGCCCTTTCGAGCAGAGAGCTCCTCCGAATAGATATG
GGATTCGACCTGGACCTCGGTGGGACGGTGTCGATCGAACCAACGGGTTC
GAAGTTCGTCTAGAGAACATGAGAGCTGAAAAGAGAAGCATCGATTATCA
AGCTTACAGAGCGTCAGTGGCGGATCTCTAG
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protein sequence of Ggra3942.t1

>Ggra3942.t1 ID=Ggra3942.t1|Name=Ggra3942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MYPLSNEKNSRGCSSTNIEGDNNTKIDEGKVKETSRKYDIPFDTGNVSDA
SPPRRPRPQPASASRQTRVITSKRDQDEKEVSDASPPRRRVRSRDSGVYP
SPAETRPRKRSRSIEGRRFSTDKMARRTSHSSATDDDLISVRSGANPVAS
SSPRERLGFHRQTATRFPHFRSPFEQRAPPNRYGIRPGPRWDGVDRTNGF
EVRLENMRAEKRSIDYQAYRASVADL*
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mRNA from alignment at tig00000908_pilon:174090..174770+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3942.t1 ID=Ggra3942.t1|Name=Ggra3942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000908_pilon:174090..174770+ (Gracilaria gracilis GNS1m male)
ATGTATCCTTTATCAAACGAAAAGAATTCAAGAGGTTGTTCTTCCACCAA
TATTGAGGGCGACAATAACACCAAGATTGATGAGGGAAAAGTGAAAGAGA
CGTCTCGAAAGTATGACATCCCATTTGACACGGGTAATGTGAGTGACGCA
TCTCCTCCTCGTCGCCCTCGTCCGCAACCTGCATCTGCATCTCGTCAGAC
GAGAGTTATAACTTCAAAACGTGATCAAGACGAAAAGGAAGTAAGTGATG
CATCTCCCCCACGTCGTCGTGTTCGAAGTCGAGACTCTGGTGTGTACCCT
AGCCCAGCCGAAACTCGACCCCGTAAACGATCGAGGTCAATCGAAGGGAG
AAGGTTTTCAACGGATAAGATGGCGAGACGCACGTCTCACAGCTCAGCCA
CTGACGACGACTTGATTTCGGTTCGCTCCGGCGCGAATCCGGTTGCCTCA
AGTTCACCTCGTGAAAGACTCGGTTTCCATCGCCAGACTGCTACACGATT
CCCACATTTTCGAAGCCCTTTCGAGCAGAGAGCTCCTCCGAATAGATATG
GGATTCGACCTGGACCTCGGTGGGACGGTGTCGATCGAACCAACGGGTTC
GAAGTTCGTCTAGAGAACATGAGAGCTGAAAAGAGAAGCATCGATTATCA
AGCTTACAGAGCGTCAGTGGCGGATCTCTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:174090..174770+

>Ggra3942.t1 ID=Ggra3942.t1|Name=Ggra3942.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000908_pilon:174090..174770+ (Gracilaria gracilis GNS1m male)
ATGTATCCTTTATCAAACGAAAAGAATTCAAGAGGTTGTTCTTCCACCAA
TATTGAGGGCGACAATAACACCAAGATTGATGAGGGAAAAGTGAAAGAGA
CGTCTCGAAAGTATGACATCCCATTTGACACGGGTAATGTGAGTGACGCA
TCTCCTCCTCGTCGCCCTCGTCCGCAACCTGCATCTGCATCTCGTCAGAC
GAGAGTTATAACTTCAAAACGTGATCAAGACGAAAAGGAAGTAAGTGATG
CATCTCCCCCACGTCGTCGTGTTCGAAGTCGAGACTCTGGTGTGTACCCT
AGCCCAGCCGAAACTCGACCCCGTAAACGATCGAGGTCAATCGAAGGGAG
AAGGTTTTCAACGGATAAGATGGCGAGACGCACGTCTCACAGCTCAGCCA
CTGACGACGACTTGATTTCGGTTCGCTCCGGCGCGAATCCGGTTGCCTCA
AGTTCACCTCGTGAAAGACTCGGTTTCCATCGCCAGACTGCTACACGATT
CCCACATTTTCGAAGCCCTTTCGAGCAGAGAGCTCCTCCGAATAGATATG
GGATTCGACCTGGACCTCGGTGGGACGGTGTCGATCGAACCAACGGGTTC
GAAGTTCGTCTAGAGAACATGAGAGCTGAAAAGAGAAGCATCGATTATCA
AGCTTACAGAGCGTCAGTGGCGGATCTCTAG
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