Ggra3852.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3852.t1
Unique NameGgra3852.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2229050..2230009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3852Ggra3852Gracilaria gracilis GNS1m malegenetig00000850_pilon 2229050..2230009 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3852.t1.stop1Ggra3852.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2229050..2229052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3852.t1.CDS1Ggra3852.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2229050..2230009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3852.t1.exon1Ggra3852.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2229050..2230009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3852.t1.start1Ggra3852.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2230007..2230009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3852.t1Ggra3852.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2229050..2230009 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3852.t1 ID=Ggra3852.t1|Name=Ggra3852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MGYQNREGIGQTLLRNQFAVFVAQILSSKLAFPEHESEHGYNYAEVFDRC
NPPPEHVSSDTNANEAHENQACILRQADLLFEHCGRGDCECLKRDVMKHV
LPLSGRCKTIGVEHNGFKTQEYSGCIGDVVKRYLGGSNRWPTPYNAIHYR
QGDLADKRNAADFWLLELNSMVKFMCKHSDLDIIVVTQGEPQIPKCGNRI
VLASNTSETAAFSIMQNARWIGLGISGFALAMAQVSSPERIVMPEYAMPY
YDWLRGPKWTVFTKTGADFSFRNGDEALSAIYHPEALDVRTHRLGFSRKH
LRFETEVPTRQWQKEALLS*
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spliced messenger RNA

>Ggra3852.t1 ID=Ggra3852.t1|Name=Ggra3852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000850_pilon:2229050..2230009- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTACCAGAACAGGGAAGGAATCGGTCAGACACTTTTACGGAATCA
ATTCGCGGTATTTGTAGCTCAAATTCTGTCGTCAAAGTTGGCTTTTCCGG
AGCACGAGAGCGAACACGGGTACAACTACGCAGAAGTCTTCGATCGATGT
AATCCGCCGCCAGAACATGTTTCGTCGGATACAAACGCTAATGAAGCACA
TGAGAACCAAGCGTGTATATTACGACAAGCAGACCTGCTCTTCGAACATT
GCGGACGAGGGGACTGTGAGTGCTTGAAAAGAGACGTGATGAAGCACGTA
CTTCCACTTTCGGGAAGATGCAAAACTATAGGTGTTGAGCATAACGGATT
CAAAACGCAAGAGTACTCCGGATGCATTGGAGACGTTGTGAAGCGGTATC
TGGGTGGTTCAAATCGCTGGCCTACGCCCTACAACGCGATACACTACCGA
CAAGGCGACTTGGCAGACAAACGCAACGCAGCCGATTTCTGGCTACTTGA
ATTGAACAGTATGGTCAAATTCATGTGCAAACACTCGGACTTGGACATAA
TCGTTGTCACACAAGGGGAGCCGCAAATCCCCAAGTGCGGGAATCGCATA
GTGCTGGCGAGTAACACGAGCGAAACTGCAGCGTTCTCCATCATGCAGAA
CGCGCGCTGGATTGGACTTGGGATCAGCGGCTTCGCGCTGGCCATGGCAC
AGGTTTCGAGTCCTGAGCGAATAGTGATGCCGGAATATGCAATGCCATAC
TACGACTGGCTACGAGGACCCAAGTGGACCGTGTTCACAAAGACTGGCGC
CGATTTCAGCTTCAGAAACGGCGACGAGGCGCTGAGCGCCATTTACCACC
CTGAGGCGCTGGATGTGCGTACCCACAGACTTGGTTTTTCGAGAAAACAT
CTTCGTTTCGAGACGGAGGTGCCAACTCGACAGTGGCAGAAGGAGGCTCT
ACTCTCTTGA
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protein sequence of Ggra3852.t1

>Ggra3852.t1 ID=Ggra3852.t1|Name=Ggra3852.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MGYQNREGIGQTLLRNQFAVFVAQILSSKLAFPEHESEHGYNYAEVFDRC
NPPPEHVSSDTNANEAHENQACILRQADLLFEHCGRGDCECLKRDVMKHV
LPLSGRCKTIGVEHNGFKTQEYSGCIGDVVKRYLGGSNRWPTPYNAIHYR
QGDLADKRNAADFWLLELNSMVKFMCKHSDLDIIVVTQGEPQIPKCGNRI
VLASNTSETAAFSIMQNARWIGLGISGFALAMAQVSSPERIVMPEYAMPY
YDWLRGPKWTVFTKTGADFSFRNGDEALSAIYHPEALDVRTHRLGFSRKH
LRFETEVPTRQWQKEALLS*
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mRNA from alignment at tig00000850_pilon:2229050..2230009-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3852.t1 ID=Ggra3852.t1|Name=Ggra3852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000850_pilon:2229050..2230009- (Gracilaria gracilis GNS1m male)
ATGGGCTACCAGAACAGGGAAGGAATCGGTCAGACACTTTTACGGAATCA
ATTCGCGGTATTTGTAGCTCAAATTCTGTCGTCAAAGTTGGCTTTTCCGG
AGCACGAGAGCGAACACGGGTACAACTACGCAGAAGTCTTCGATCGATGT
AATCCGCCGCCAGAACATGTTTCGTCGGATACAAACGCTAATGAAGCACA
TGAGAACCAAGCGTGTATATTACGACAAGCAGACCTGCTCTTCGAACATT
GCGGACGAGGGGACTGTGAGTGCTTGAAAAGAGACGTGATGAAGCACGTA
CTTCCACTTTCGGGAAGATGCAAAACTATAGGTGTTGAGCATAACGGATT
CAAAACGCAAGAGTACTCCGGATGCATTGGAGACGTTGTGAAGCGGTATC
TGGGTGGTTCAAATCGCTGGCCTACGCCCTACAACGCGATACACTACCGA
CAAGGCGACTTGGCAGACAAACGCAACGCAGCCGATTTCTGGCTACTTGA
ATTGAACAGTATGGTCAAATTCATGTGCAAACACTCGGACTTGGACATAA
TCGTTGTCACACAAGGGGAGCCGCAAATCCCCAAGTGCGGGAATCGCATA
GTGCTGGCGAGTAACACGAGCGAAACTGCAGCGTTCTCCATCATGCAGAA
CGCGCGCTGGATTGGACTTGGGATCAGCGGCTTCGCGCTGGCCATGGCAC
AGGTTTCGAGTCCTGAGCGAATAGTGATGCCGGAATATGCAATGCCATAC
TACGACTGGCTACGAGGACCCAAGTGGACCGTGTTCACAAAGACTGGCGC
CGATTTCAGCTTCAGAAACGGCGACGAGGCGCTGAGCGCCATTTACCACC
CTGAGGCGCTGGATGTGCGTACCCACAGACTTGGTTTTTCGAGAAAACAT
CTTCGTTTCGAGACGGAGGTGCCAACTCGACAGTGGCAGAAGGAGGCTCT
ACTCTCTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2229050..2230009-

>Ggra3852.t1 ID=Ggra3852.t1|Name=Ggra3852.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000850_pilon:2229050..2230009- (Gracilaria gracilis GNS1m male)
ATGGGCTACCAGAACAGGGAAGGAATCGGTCAGACACTTTTACGGAATCA
ATTCGCGGTATTTGTAGCTCAAATTCTGTCGTCAAAGTTGGCTTTTCCGG
AGCACGAGAGCGAACACGGGTACAACTACGCAGAAGTCTTCGATCGATGT
AATCCGCCGCCAGAACATGTTTCGTCGGATACAAACGCTAATGAAGCACA
TGAGAACCAAGCGTGTATATTACGACAAGCAGACCTGCTCTTCGAACATT
GCGGACGAGGGGACTGTGAGTGCTTGAAAAGAGACGTGATGAAGCACGTA
CTTCCACTTTCGGGAAGATGCAAAACTATAGGTGTTGAGCATAACGGATT
CAAAACGCAAGAGTACTCCGGATGCATTGGAGACGTTGTGAAGCGGTATC
TGGGTGGTTCAAATCGCTGGCCTACGCCCTACAACGCGATACACTACCGA
CAAGGCGACTTGGCAGACAAACGCAACGCAGCCGATTTCTGGCTACTTGA
ATTGAACAGTATGGTCAAATTCATGTGCAAACACTCGGACTTGGACATAA
TCGTTGTCACACAAGGGGAGCCGCAAATCCCCAAGTGCGGGAATCGCATA
GTGCTGGCGAGTAACACGAGCGAAACTGCAGCGTTCTCCATCATGCAGAA
CGCGCGCTGGATTGGACTTGGGATCAGCGGCTTCGCGCTGGCCATGGCAC
AGGTTTCGAGTCCTGAGCGAATAGTGATGCCGGAATATGCAATGCCATAC
TACGACTGGCTACGAGGACCCAAGTGGACCGTGTTCACAAAGACTGGCGC
CGATTTCAGCTTCAGAAACGGCGACGAGGCGCTGAGCGCCATTTACCACC
CTGAGGCGCTGGATGTGCGTACCCACAGACTTGGTTTTTCGAGAAAACAT
CTTCGTTTCGAGACGGAGGTGCCAACTCGACAGTGGCAGAAGGAGGCTCT
ACTCTCTTGA
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