Ggra3768.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3768.t1
Unique Name	Ggra3768.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	611

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1510294..1512126 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3768	Ggra3768	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1510294..1512126 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3768.t1.start1	Ggra3768.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1510294..1510296 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3768.t1.CDS1	Ggra3768.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1510294..1512126 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3768.t1.exon1	Ggra3768.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1510294..1512126 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3768.t1.stop1	Ggra3768.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1512124..1512126 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3768.t1	Ggra3768.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1510294..1512126 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1510294..1512126+
coding sequence from alignment at tig00000850_pilon:1510294..1512126+

mRNA sequence

>Ggra3768.t1 ID=Ggra3768.t1|Name=Ggra3768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=611bp
MSSNASTIASDEELPQLFSTESEIGFPTSVSRSGSDITTPDASSPDTTVS
NELQTPATPPTNAHAGSDASSIGGFGFGSISTLPFFELSPSIRSAIAPPI
PPQAGERVTIMNLPNEVVDLIFRYLSSRPRAKEPLWDTYAHTRNAMSFAL
TNSRFLSLFRARMVSIRTKPERFREDLLYTAPQNGVVIEARSPQDVKHLS
STLCLAGAALRELVLTKNLPNHSWVDGYLKYVTHLRKLSLRDVSPQYPLE
VILEASSRTLRELELVGATGMALSTNQLHAIATHCSSVTSLALRLSMFDH
DWTNVWMGVGPGLKRLSLGATRFWIMDTEEVPLLEQVGRYCADITELHFY
HLGPTLGMACARLCARYGSQLEKLEFEQSQLLRPDLMVIAEGCTAAKLSI
SHGSSLFSHSYNVDVIDMLGGQIQALRYRSQLSHDESLWEIGRQCVQLRE
LRLDSASTLTEQALENILGATAPRLESVSLSFFVRGVERTVASCALRVLA
RKARQLRELYIGGQQMDVATFGRVMAACAATLEQVAVTFGFRTAAERAVV
EADTLVEVVRATHVCARLRSLVVVDRTSRDSRGASAAMRDAVFPLRRRAE
RVSVCGVHFV*

spliced messenger RNA

>Ggra3768.t1 ID=Ggra3768.t1|Name=Ggra3768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000850_pilon:1510294..1512126+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTAACGCTTCGACTATAGCCTCAGATGAGGAACTGCCTCAGCT
TTTCTCTACGGAAAGCGAGATTGGGTTTCCTACGTCGGTTTCTAGGAGTG
GTTCTGACATAACAACACCAGATGCATCTAGTCCAGATACAACAGTATCT
AACGAGCTACAGACACCAGCAACACCGCCGACAAATGCACATGCCGGTTC
GGATGCTTCTTCAATAGGGGGTTTTGGTTTCGGTTCCATCTCTACACTTC
CGTTCTTCGAGCTCTCTCCCAGCATCCGCAGCGCCATCGCACCACCAATT
CCGCCTCAGGCAGGAGAACGGGTGACAATAATGAACCTGCCCAACGAAGT
GGTGGATTTGATCTTCCGATACTTATCATCACGACCTCGAGCTAAGGAAC
CGCTGTGGGACACATATGCGCACACGAGAAATGCAATGTCATTCGCGCTC
ACAAATTCTCGTTTCCTTAGTCTGTTCCGAGCGCGAATGGTATCGATTCG
TACCAAGCCGGAACGCTTCCGTGAAGACCTGTTGTACACGGCGCCGCAGA
ATGGGGTGGTGATTGAAGCCAGAAGCCCCCAGGACGTGAAGCACCTTTCT
TCCACATTATGTCTAGCAGGCGCAGCTCTTCGGGAGCTTGTGCTCACCAA
GAACCTACCGAACCACTCGTGGGTTGACGGGTACCTGAAATATGTTACTC
ACCTACGAAAGTTGTCGCTGCGCGATGTAAGCCCACAGTACCCGCTCGAA
GTGATACTGGAAGCGTCGTCGCGCACGCTGCGTGAACTGGAGCTGGTGGG
GGCGACTGGAATGGCGCTGTCCACGAACCAACTGCATGCTATCGCGACAC
ATTGCAGCTCGGTAACGAGCCTAGCGCTACGTCTGAGCATGTTTGACCAT
GACTGGACTAACGTGTGGATGGGGGTTGGACCGGGGCTGAAGCGGCTGTC
GCTGGGAGCAACTCGGTTCTGGATCATGGATACCGAGGAGGTGCCGCTGC
TAGAGCAGGTGGGACGGTACTGCGCGGACATCACGGAGCTGCACTTCTAC
CACCTGGGGCCGACGCTAGGGATGGCGTGCGCGCGGCTGTGTGCGCGGTA
CGGGTCGCAGTTAGAAAAGCTGGAGTTTGAGCAGAGCCAGCTGCTGCGGC
CGGACCTGATGGTAATCGCGGAGGGGTGCACGGCGGCAAAGCTGTCCATA
TCGCACGGGTCGTCGCTGTTTTCACACTCGTACAACGTGGACGTGATTGA
CATGCTGGGCGGTCAGATCCAGGCGCTGCGCTACCGGTCGCAGCTGTCGC
ACGACGAGAGCCTGTGGGAGATTGGGCGACAGTGCGTGCAGCTGCGGGAG
CTGCGGCTGGACAGCGCGTCGACGCTGACCGAGCAGGCGCTGGAGAACAT
CCTGGGGGCGACGGCGCCGCGGCTAGAGTCGGTGTCGCTGTCGTTTTTCG
TGCGGGGGGTGGAGCGCACGGTGGCGAGCTGCGCGCTGCGGGTGCTGGCG
CGGAAGGCGCGGCAGCTGCGGGAGCTGTACATCGGGGGGCAGCAGATGGA
CGTGGCGACGTTCGGGCGGGTGATGGCGGCGTGCGCGGCGACGCTGGAGC
AGGTGGCGGTGACGTTTGGCTTCCGCACGGCGGCGGAGCGCGCGGTGGTG
GAGGCGGACACGCTGGTGGAGGTGGTGCGGGCGACGCACGTGTGCGCGCG
GCTGCGCAGCCTCGTGGTGGTGGACCGCACGTCGCGCGACAGCCGCGGCG
CGTCGGCGGCGATGCGCGACGCGGTGTTCCCGCTGCGCCGCCGCGCCGAG
CGCGTGAGCGTTTGTGGCGTGCACTTTGTGTAG

protein sequence of Ggra3768.t1

>Ggra3768.t1 ID=Ggra3768.t1|Name=Ggra3768.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=611bp
MSSNASTIASDEELPQLFSTESEIGFPTSVSRSGSDITTPDASSPDTTVS
NELQTPATPPTNAHAGSDASSIGGFGFGSISTLPFFELSPSIRSAIAPPI
PPQAGERVTIMNLPNEVVDLIFRYLSSRPRAKEPLWDTYAHTRNAMSFAL
TNSRFLSLFRARMVSIRTKPERFREDLLYTAPQNGVVIEARSPQDVKHLS
STLCLAGAALRELVLTKNLPNHSWVDGYLKYVTHLRKLSLRDVSPQYPLE
VILEASSRTLRELELVGATGMALSTNQLHAIATHCSSVTSLALRLSMFDH
DWTNVWMGVGPGLKRLSLGATRFWIMDTEEVPLLEQVGRYCADITELHFY
HLGPTLGMACARLCARYGSQLEKLEFEQSQLLRPDLMVIAEGCTAAKLSI
SHGSSLFSHSYNVDVIDMLGGQIQALRYRSQLSHDESLWEIGRQCVQLRE
LRLDSASTLTEQALENILGATAPRLESVSLSFFVRGVERTVASCALRVLA
RKARQLRELYIGGQQMDVATFGRVMAACAATLEQVAVTFGFRTAAERAVV
EADTLVEVVRATHVCARLRSLVVVDRTSRDSRGASAAMRDAVFPLRRRAE
RVSVCGVHFV*

mRNA from alignment at tig00000850_pilon:1510294..1512126+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3768.t1 ID=Ggra3768.t1|Name=Ggra3768.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000850_pilon:1510294..1512126+ (Gracilaria gracilis GNS1m male)
ATGAGCTCTAACGCTTCGACTATAGCCTCAGATGAGGAACTGCCTCAGCT
TTTCTCTACGGAAAGCGAGATTGGGTTTCCTACGTCGGTTTCTAGGAGTG
GTTCTGACATAACAACACCAGATGCATCTAGTCCAGATACAACAGTATCT
AACGAGCTACAGACACCAGCAACACCGCCGACAAATGCACATGCCGGTTC
GGATGCTTCTTCAATAGGGGGTTTTGGTTTCGGTTCCATCTCTACACTTC
CGTTCTTCGAGCTCTCTCCCAGCATCCGCAGCGCCATCGCACCACCAATT
CCGCCTCAGGCAGGAGAACGGGTGACAATAATGAACCTGCCCAACGAAGT
GGTGGATTTGATCTTCCGATACTTATCATCACGACCTCGAGCTAAGGAAC
CGCTGTGGGACACATATGCGCACACGAGAAATGCAATGTCATTCGCGCTC
ACAAATTCTCGTTTCCTTAGTCTGTTCCGAGCGCGAATGGTATCGATTCG
TACCAAGCCGGAACGCTTCCGTGAAGACCTGTTGTACACGGCGCCGCAGA
ATGGGGTGGTGATTGAAGCCAGAAGCCCCCAGGACGTGAAGCACCTTTCT
TCCACATTATGTCTAGCAGGCGCAGCTCTTCGGGAGCTTGTGCTCACCAA
GAACCTACCGAACCACTCGTGGGTTGACGGGTACCTGAAATATGTTACTC
ACCTACGAAAGTTGTCGCTGCGCGATGTAAGCCCACAGTACCCGCTCGAA
GTGATACTGGAAGCGTCGTCGCGCACGCTGCGTGAACTGGAGCTGGTGGG
GGCGACTGGAATGGCGCTGTCCACGAACCAACTGCATGCTATCGCGACAC
ATTGCAGCTCGGTAACGAGCCTAGCGCTACGTCTGAGCATGTTTGACCAT
GACTGGACTAACGTGTGGATGGGGGTTGGACCGGGGCTGAAGCGGCTGTC
GCTGGGAGCAACTCGGTTCTGGATCATGGATACCGAGGAGGTGCCGCTGC
TAGAGCAGGTGGGACGGTACTGCGCGGACATCACGGAGCTGCACTTCTAC
CACCTGGGGCCGACGCTAGGGATGGCGTGCGCGCGGCTGTGTGCGCGGTA
CGGGTCGCAGTTAGAAAAGCTGGAGTTTGAGCAGAGCCAGCTGCTGCGGC
CGGACCTGATGGTAATCGCGGAGGGGTGCACGGCGGCAAAGCTGTCCATA
TCGCACGGGTCGTCGCTGTTTTCACACTCGTACAACGTGGACGTGATTGA
CATGCTGGGCGGTCAGATCCAGGCGCTGCGCTACCGGTCGCAGCTGTCGC
ACGACGAGAGCCTGTGGGAGATTGGGCGACAGTGCGTGCAGCTGCGGGAG
CTGCGGCTGGACAGCGCGTCGACGCTGACCGAGCAGGCGCTGGAGAACAT
CCTGGGGGCGACGGCGCCGCGGCTAGAGTCGGTGTCGCTGTCGTTTTTCG
TGCGGGGGGTGGAGCGCACGGTGGCGAGCTGCGCGCTGCGGGTGCTGGCG
CGGAAGGCGCGGCAGCTGCGGGAGCTGTACATCGGGGGGCAGCAGATGGA
CGTGGCGACGTTCGGGCGGGTGATGGCGGCGTGCGCGGCGACGCTGGAGC
AGGTGGCGGTGACGTTTGGCTTCCGCACGGCGGCGGAGCGCGCGGTGGTG
GAGGCGGACACGCTGGTGGAGGTGGTGCGGGCGACGCACGTGTGCGCGCG
GCTGCGCAGCCTCGTGGTGGTGGACCGCACGTCGCGCGACAGCCGCGGCG
CGTCGGCGGCGATGCGCGACGCGGTGTTCCCGCTGCGCCGCCGCGCCGAG
CGCGTGAGCGTTTGTGGCGTGCACTTTGTGTAG

Coding sequence (CDS) from alignment at tig00000850_pilon:1510294..1512126+

>Ggra3768.t1 ID=Ggra3768.t1|Name=Ggra3768.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1833bp|location=Sequence derived from alignment at tig00000850_pilon:1510294..1512126+ (Gracilaria gracilis GNS1m male)
ATGAGCTCTAACGCTTCGACTATAGCCTCAGATGAGGAACTGCCTCAGCT
TTTCTCTACGGAAAGCGAGATTGGGTTTCCTACGTCGGTTTCTAGGAGTG
GTTCTGACATAACAACACCAGATGCATCTAGTCCAGATACAACAGTATCT
AACGAGCTACAGACACCAGCAACACCGCCGACAAATGCACATGCCGGTTC
GGATGCTTCTTCAATAGGGGGTTTTGGTTTCGGTTCCATCTCTACACTTC
CGTTCTTCGAGCTCTCTCCCAGCATCCGCAGCGCCATCGCACCACCAATT
CCGCCTCAGGCAGGAGAACGGGTGACAATAATGAACCTGCCCAACGAAGT
GGTGGATTTGATCTTCCGATACTTATCATCACGACCTCGAGCTAAGGAAC
CGCTGTGGGACACATATGCGCACACGAGAAATGCAATGTCATTCGCGCTC
ACAAATTCTCGTTTCCTTAGTCTGTTCCGAGCGCGAATGGTATCGATTCG
TACCAAGCCGGAACGCTTCCGTGAAGACCTGTTGTACACGGCGCCGCAGA
ATGGGGTGGTGATTGAAGCCAGAAGCCCCCAGGACGTGAAGCACCTTTCT
TCCACATTATGTCTAGCAGGCGCAGCTCTTCGGGAGCTTGTGCTCACCAA
GAACCTACCGAACCACTCGTGGGTTGACGGGTACCTGAAATATGTTACTC
ACCTACGAAAGTTGTCGCTGCGCGATGTAAGCCCACAGTACCCGCTCGAA
GTGATACTGGAAGCGTCGTCGCGCACGCTGCGTGAACTGGAGCTGGTGGG
GGCGACTGGAATGGCGCTGTCCACGAACCAACTGCATGCTATCGCGACAC
ATTGCAGCTCGGTAACGAGCCTAGCGCTACGTCTGAGCATGTTTGACCAT
GACTGGACTAACGTGTGGATGGGGGTTGGACCGGGGCTGAAGCGGCTGTC
GCTGGGAGCAACTCGGTTCTGGATCATGGATACCGAGGAGGTGCCGCTGC
TAGAGCAGGTGGGACGGTACTGCGCGGACATCACGGAGCTGCACTTCTAC
CACCTGGGGCCGACGCTAGGGATGGCGTGCGCGCGGCTGTGTGCGCGGTA
CGGGTCGCAGTTAGAAAAGCTGGAGTTTGAGCAGAGCCAGCTGCTGCGGC
CGGACCTGATGGTAATCGCGGAGGGGTGCACGGCGGCAAAGCTGTCCATA
TCGCACGGGTCGTCGCTGTTTTCACACTCGTACAACGTGGACGTGATTGA
CATGCTGGGCGGTCAGATCCAGGCGCTGCGCTACCGGTCGCAGCTGTCGC
ACGACGAGAGCCTGTGGGAGATTGGGCGACAGTGCGTGCAGCTGCGGGAG
CTGCGGCTGGACAGCGCGTCGACGCTGACCGAGCAGGCGCTGGAGAACAT
CCTGGGGGCGACGGCGCCGCGGCTAGAGTCGGTGTCGCTGTCGTTTTTCG
TGCGGGGGGTGGAGCGCACGGTGGCGAGCTGCGCGCTGCGGGTGCTGGCG
CGGAAGGCGCGGCAGCTGCGGGAGCTGTACATCGGGGGGCAGCAGATGGA
CGTGGCGACGTTCGGGCGGGTGATGGCGGCGTGCGCGGCGACGCTGGAGC
AGGTGGCGGTGACGTTTGGCTTCCGCACGGCGGCGGAGCGCGCGGTGGTG
GAGGCGGACACGCTGGTGGAGGTGGTGCGGGCGACGCACGTGTGCGCGCG
GCTGCGCAGCCTCGTGGTGGTGGACCGCACGTCGCGCGACAGCCGCGGCG
CGTCGGCGGCGATGCGCGACGCGGTGTTCCCGCTGCGCCGCCGCGCCGAG
CGCGTGAGCGTTTGTGGCGTGCACTTTGTGTAG