Ggra3747.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3747.t1
Unique NameGgra3747.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1296349..1297092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue8.4e-23
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3747Ggra3747Gracilaria gracilis GNS1m malegenetig00000850_pilon 1296349..1297092 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3747.t1.start1Ggra3747.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1296349..1296351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3747.t1.CDS1Ggra3747.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1296349..1297092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3747.t1.exon1Ggra3747.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1296349..1297092 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3747.t1.stop1Ggra3747.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1297090..1297092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3747.t1Ggra3747.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1296349..1297092 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3747.t1 ID=Ggra3747.t1|Name=Ggra3747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MRAVLLLFVAVGLLCYAPALAKSGINPCHGVKSVFGKGVTCEKVEFPVGL
CSACKLKPFNPANGFFYDCAAIYDLDDPDCQSKLRHYASMNAHCDPIRLN
QVRDFSNGWNRRGLDYFVYSVCEECCDCVPIGARADQHSWRAQNNQLLNS
KRGNCPAHAFYDVCAVLPNIRFPKNPGGVDHWDWPKICPLITKWQFSPAS
KNWLTKSYVNMDWRINRFLVWFFWHNSCGFVDTWKNCVNLEHAQKRV*
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spliced messenger RNA

>Ggra3747.t1 ID=Ggra3747.t1|Name=Ggra3747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000850_pilon:1296349..1297092+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCCGTGTTGTTGTTGTTCGTCGCCGTTGGGCTGCTGTGCTACGC
GCCCGCGCTGGCCAAGAGTGGTATCAACCCGTGCCATGGCGTCAAGAGCG
TGTTTGGCAAGGGGGTCACTTGTGAGAAGGTGGAGTTCCCGGTGGGCTTG
TGCTCGGCGTGCAAGCTCAAGCCGTTCAACCCGGCCAATGGCTTCTTTTA
CGATTGCGCCGCCATCTACGATTTGGATGACCCGGACTGTCAATCAAAGC
TCCGCCACTACGCTAGTATGAACGCCCATTGTGACCCCATTCGCCTCAAT
CAGGTGAGAGACTTTAGCAACGGCTGGAATCGACGCGGCTTGGATTACTT
TGTGTACTCCGTGTGTGAGGAGTGCTGCGACTGTGTGCCCATCGGCGCTC
GCGCAGATCAGCACAGCTGGCGCGCGCAGAACAACCAGCTGCTCAACAGC
AAGCGGGGCAACTGTCCGGCGCATGCTTTCTACGACGTGTGCGCAGTGCT
GCCAAACATTCGCTTCCCGAAGAACCCCGGCGGCGTGGATCACTGGGACT
GGCCAAAGATTTGTCCGTTGATCACCAAGTGGCAATTCTCGCCCGCGTCC
AAGAATTGGCTCACAAAGTCGTACGTGAACATGGACTGGCGAATCAATCG
CTTCCTCGTTTGGTTCTTCTGGCACAACTCTTGTGGCTTTGTGGACACAT
GGAAGAACTGCGTCAACCTGGAACATGCGCAAAAGCGTGTGTGA
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protein sequence of Ggra3747.t1

>Ggra3747.t1 ID=Ggra3747.t1|Name=Ggra3747.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MRAVLLLFVAVGLLCYAPALAKSGINPCHGVKSVFGKGVTCEKVEFPVGL
CSACKLKPFNPANGFFYDCAAIYDLDDPDCQSKLRHYASMNAHCDPIRLN
QVRDFSNGWNRRGLDYFVYSVCEECCDCVPIGARADQHSWRAQNNQLLNS
KRGNCPAHAFYDVCAVLPNIRFPKNPGGVDHWDWPKICPLITKWQFSPAS
KNWLTKSYVNMDWRINRFLVWFFWHNSCGFVDTWKNCVNLEHAQKRV*
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mRNA from alignment at tig00000850_pilon:1296349..1297092+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3747.t1 ID=Ggra3747.t1|Name=Ggra3747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000850_pilon:1296349..1297092+ (Gracilaria gracilis GNS1m male)
ATGAGAGCCGTGTTGTTGTTGTTCGTCGCCGTTGGGCTGCTGTGCTACGC
GCCCGCGCTGGCCAAGAGTGGTATCAACCCGTGCCATGGCGTCAAGAGCG
TGTTTGGCAAGGGGGTCACTTGTGAGAAGGTGGAGTTCCCGGTGGGCTTG
TGCTCGGCGTGCAAGCTCAAGCCGTTCAACCCGGCCAATGGCTTCTTTTA
CGATTGCGCCGCCATCTACGATTTGGATGACCCGGACTGTCAATCAAAGC
TCCGCCACTACGCTAGTATGAACGCCCATTGTGACCCCATTCGCCTCAAT
CAGGTGAGAGACTTTAGCAACGGCTGGAATCGACGCGGCTTGGATTACTT
TGTGTACTCCGTGTGTGAGGAGTGCTGCGACTGTGTGCCCATCGGCGCTC
GCGCAGATCAGCACAGCTGGCGCGCGCAGAACAACCAGCTGCTCAACAGC
AAGCGGGGCAACTGTCCGGCGCATGCTTTCTACGACGTGTGCGCAGTGCT
GCCAAACATTCGCTTCCCGAAGAACCCCGGCGGCGTGGATCACTGGGACT
GGCCAAAGATTTGTCCGTTGATCACCAAGTGGCAATTCTCGCCCGCGTCC
AAGAATTGGCTCACAAAGTCGTACGTGAACATGGACTGGCGAATCAATCG
CTTCCTCGTTTGGTTCTTCTGGCACAACTCTTGTGGCTTTGTGGACACAT
GGAAGAACTGCGTCAACCTGGAACATGCGCAAAAGCGTGTGTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1296349..1297092+

>Ggra3747.t1 ID=Ggra3747.t1|Name=Ggra3747.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000850_pilon:1296349..1297092+ (Gracilaria gracilis GNS1m male)
ATGAGAGCCGTGTTGTTGTTGTTCGTCGCCGTTGGGCTGCTGTGCTACGC
GCCCGCGCTGGCCAAGAGTGGTATCAACCCGTGCCATGGCGTCAAGAGCG
TGTTTGGCAAGGGGGTCACTTGTGAGAAGGTGGAGTTCCCGGTGGGCTTG
TGCTCGGCGTGCAAGCTCAAGCCGTTCAACCCGGCCAATGGCTTCTTTTA
CGATTGCGCCGCCATCTACGATTTGGATGACCCGGACTGTCAATCAAAGC
TCCGCCACTACGCTAGTATGAACGCCCATTGTGACCCCATTCGCCTCAAT
CAGGTGAGAGACTTTAGCAACGGCTGGAATCGACGCGGCTTGGATTACTT
TGTGTACTCCGTGTGTGAGGAGTGCTGCGACTGTGTGCCCATCGGCGCTC
GCGCAGATCAGCACAGCTGGCGCGCGCAGAACAACCAGCTGCTCAACAGC
AAGCGGGGCAACTGTCCGGCGCATGCTTTCTACGACGTGTGCGCAGTGCT
GCCAAACATTCGCTTCCCGAAGAACCCCGGCGGCGTGGATCACTGGGACT
GGCCAAAGATTTGTCCGTTGATCACCAAGTGGCAATTCTCGCCCGCGTCC
AAGAATTGGCTCACAAAGTCGTACGTGAACATGGACTGGCGAATCAATCG
CTTCCTCGTTTGGTTCTTCTGGCACAACTCTTGTGGCTTTGTGGACACAT
GGAAGAACTGCGTCAACCTGGAACATGCGCAAAAGCGTGTGTGA
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