Ggra370.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra370.t1
Unique NameGgra370.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:183278..185431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702863.1
PFAMsKH_1,STAR_dimer
Max annot lvl2759|Eukaryota
KEGG koko:K14945
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048577,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048587,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0097159,GO:1901363,GO:2000026,GO:2000028,GO:2000241,GO:2000242
Evalue7.8e-58
EggNOG OGsCOG5176@1|root,KOG1588@2759|Eukaryota
DescriptionRNA binding
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra370Ggra370Gracilaria gracilis GNS1m malegenetig00000950_pilon 183278..185431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra370.t1Ggra370.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 183278..185431 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra370.t1.stop1Ggra370.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 183278..183280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra370.t1.CDS1Ggra370.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 183278..183307 -
Ggra370.t1.CDS2Ggra370.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000950_pilon 183540..183559 -
Ggra370.t1.CDS3Ggra370.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000950_pilon 183619..184274 -
Ggra370.t1.CDS4Ggra370.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000950_pilon 184545..185431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra370.t1.exon1Ggra370.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 183278..183307 -
Ggra370.t1.exon2Ggra370.t1.exon2Gracilaria gracilis GNS1m maleexontig00000950_pilon 183540..183559 -
Ggra370.t1.exon3Ggra370.t1.exon3Gracilaria gracilis GNS1m maleexontig00000950_pilon 183619..184274 -
Ggra370.t1.exon4Ggra370.t1.exon4Gracilaria gracilis GNS1m maleexontig00000950_pilon 184545..185431 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra370.t1.intron1Ggra370.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000950_pilon 183308..183539 -
Ggra370.t1.intron2Ggra370.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000950_pilon 183560..183618 -
Ggra370.t1.intron3Ggra370.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000950_pilon 184275..184544 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra370.t1.start1Ggra370.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 185429..185431 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra370.t1 ID=Ggra370.t1|Name=Ggra370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp
MARVSTHLEQLVREAEVLSSIKNDVPNAWKILELEIGRARAAVVRAVDAD
HSLPLHPASSSDACVPTSSATLHDHAPRHSVRKRVKLRVPADQYPEYNFV
GRLLGPRGATLKRLERDTGCRIMIRGKGSIRKDKEAEVRGKPGWEHVFNE
PLHVVIEVVDSPDELSASRILNHAKQLVEILLIPVPEERDSLKRAQLRDL
AILNGTHRSVSDLLGATPHNMPLSTVHRSNPLATSPPPLRRAQSQHTKPS
QKMYANDYANMFEPLLPFARHNSYSPPVPSPPRALHNLASYSQPNSSTSN
TNFPLPVPSPTIVDPEIYPYPPTPGLLTADQQLSAFASPTWTPSRPPASA
MSSSSLPPRSPPAAADSNTQPSSSFLLGRTLGDFSRHSHSHNTPSLDSTS
LDALSFDASFGAARAPQFADLDARDSVHAQKHPFSAMRNSNGDAIVLANL
FPPSATVASTTAKPFEQRRELSHVQHADSHHVKQHAHSRQSSPQQLEAAH
GLSAHSIGVPDTSGRLLADEKDCFFSSSIS*
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spliced messenger RNA

>Ggra370.t1 ID=Ggra370.t1|Name=Ggra370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00000950_pilon:183278..185431- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGCGTGTCCACGCATCTCGAGCAGCTCGTGCGCGAGGCCGAGGT
GCTATCGAGCATCAAGAACGACGTGCCCAACGCCTGGAAGATCCTCGAGT
TGGAAATCGGCCGCGCGCGCGCCGCCGTCGTGCGCGCCGTCGACGCCGAC
CACTCCTTACCGTTGCACCCCGCCTCGTCGTCGGACGCCTGTGTGCCGAC
GTCCTCCGCCACGCTGCATGACCACGCGCCGAGACACTCCGTGCGCAAGC
GCGTCAAGCTGCGCGTCCCCGCCGATCAGTACCCCGAGTACAACTTTGTG
GGGCGCTTGTTGGGCCCGCGCGGCGCTACGCTCAAGCGCTTGGAGCGTGA
TACGGGTTGCCGTATCATGATCCGTGGAAAGGGAAGCATTCGTAAGGATA
AGGAGGCTGAAGTTCGCGGAAAGCCCGGTTGGGAGCATGTGTTCAACGAG
CCGTTGCATGTTGTTATCGAGGTTGTGGATTCGCCCGATGAGCTTTCGGC
TAGCCGCATTCTCAACCATGCCAAGCAGCTGGTGGAGATTTTGCTCATCC
CCGTCCCGGAGGAGCGTGACTCTCTTAAACGCGCTCAGCTTCGTGACCTT
GCCATTCTCAACGGCACCCATCGAAGTGTGTCCGATTTGCTTGGCGCCAC
GCCGCACAATATGCCGCTTTCCACCGTGCATCGTTCCAATCCGCTCGCTA
CTTCGCCGCCGCCGTTACGACGCGCACAATCTCAACATACAAAGCCGTCG
CAAAAGATGTATGCTAATGATTATGCCAACATGTTTGAGCCCTTGTTACC
GTTTGCTCGTCATAATTCTTACTCGCCGCCTGTGCCGTCGCCGCCGCGTG
CCTTGCATAACCTGGCGTCGTATTCGCAGCCTAATTCTAGTACCTCAAAC
ACCAACTTCCCATTGCCTGTGCCCTCGCCAACCATCGTGGACCCGGAGAT
CTATCCTTACCCCCCTACACCGGGCCTGCTTACCGCCGATCAGCAGCTCA
GTGCGTTTGCCTCCCCCACGTGGACGCCATCTCGTCCACCTGCGAGTGCC
ATGTCATCCAGTTCTCTTCCTCCTCGTTCTCCACCTGCCGCCGCCGACAG
TAACACTCAACCCTCTTCGTCGTTCCTTCTTGGCAGAACTCTTGGAGATT
TTTCCCGTCACTCGCACTCGCATAACACGCCGTCGCTCGACTCCACTTCG
CTGGATGCGCTGTCGTTTGACGCCTCGTTTGGAGCCGCTCGTGCGCCACA
GTTTGCCGATCTGGACGCGAGGGACTCTGTGCACGCGCAGAAGCACCCGT
TTTCAGCCATGAGGAACTCCAATGGTGATGCCATTGTGTTGGCCAATCTG
TTCCCGCCCAGCGCTACCGTGGCTTCTACCACCGCCAAGCCGTTTGAGCA
GCGACGGGAGTTGTCGCATGTGCAGCATGCGGACTCCCATCATGTGAAGC
AACATGCACATAGTCGTCAGTCTTCGCCGCAGCAACTTGAGGCTGCGCAT
GGCCTTTCGGCGCACTCCATTGGTGTGCCGGACACGTCCGGTCGACTGTT
AGCTGATGAGAAGGATTGTTTCTTTTCCTCAAGCATCAGTTGA
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protein sequence of Ggra370.t1

>Ggra370.t1 ID=Ggra370.t1|Name=Ggra370.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=531bp
MARVSTHLEQLVREAEVLSSIKNDVPNAWKILELEIGRARAAVVRAVDAD
HSLPLHPASSSDACVPTSSATLHDHAPRHSVRKRVKLRVPADQYPEYNFV
GRLLGPRGATLKRLERDTGCRIMIRGKGSIRKDKEAEVRGKPGWEHVFNE
PLHVVIEVVDSPDELSASRILNHAKQLVEILLIPVPEERDSLKRAQLRDL
AILNGTHRSVSDLLGATPHNMPLSTVHRSNPLATSPPPLRRAQSQHTKPS
QKMYANDYANMFEPLLPFARHNSYSPPVPSPPRALHNLASYSQPNSSTSN
TNFPLPVPSPTIVDPEIYPYPPTPGLLTADQQLSAFASPTWTPSRPPASA
MSSSSLPPRSPPAAADSNTQPSSSFLLGRTLGDFSRHSHSHNTPSLDSTS
LDALSFDASFGAARAPQFADLDARDSVHAQKHPFSAMRNSNGDAIVLANL
FPPSATVASTTAKPFEQRRELSHVQHADSHHVKQHAHSRQSSPQQLEAAH
GLSAHSIGVPDTSGRLLADEKDCFFSSSIS*
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mRNA from alignment at tig00000950_pilon:183278..185431-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra370.t1 ID=Ggra370.t1|Name=Ggra370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2154bp|location=Sequence derived from alignment at tig00000950_pilon:183278..185431- (Gracilaria gracilis GNS1m male)
ATGGCCCGCGTGTCCACGCATCTCGAGCAGCTCGTGCGCGAGGCCGAGGT
GCTATCGAGCATCAAGAACGACGTGCCCAACGCCTGGAAGATCCTCGAGT
TGGAAATCGGCCGCGCGCGCGCCGCCGTCGTGCGCGCCGTCGACGCCGAC
CACTCCTTACCGTTGCACCCCGCCTCGTCGTCGGACGCCTGTGTGCCGAC
GTCCTCCGCCACGCTGCATGACCACGCGCCGAGACACTCCGTGCGCAAGC
GCGTCAAGCTGCGCGTCCCCGCCGATCAGTACCCCGAGTACAACTTTGTG
GGGCGCTTGTTGGGCCCGCGCGGCGCTACGCTCAAGCGCTTGGAGCGTGA
TACGGGTTGCCGTATCATGATCCGTGGAAAGGGAAGCATTCGTAAGGATA
AGGAGGCTGAAGTTCGCGGAAAGCCCGGTTGGGAGCATGTGTTCAACGAG
CCGTTGCATGTTGTTATCGAGGTTGTGGATTCGCCCGATGAGCTTTCGGC
TAGCCGCATTCTCAACCATGCCAAGCAGCTGGTGGAGATTTTGCTCATCC
CCGTCCCGGAGGAGCGTGACTCTCTTAAACGCGCTCAGCTTCGTGACCTT
GCCATTCTCAACGGCACCCATCGAAGTGTGTCCGATTTGCTTGGCGCCAC
GCCGCACAATATGCCGCTTTCCACCGTGCATCGTTCCAATCCGCTCGCTA
CTTCGCCGCCGCCGTTACGACGCGCACAATCTCAACATACAAAGCCGTCG
CAAAAGATGTATGCTAATGATTATGCCAACATGTTTGAGCCCTTGTTACC
GTTTGCTCGTCATAATTCTTACTCGCCGCCTGTGCCGTCGCCGCCGCGTG
CCTTGCATAACCTGGCGTCGTATTCGCAGCCTAATTCGTATGCTCATACT
TCGCATGATTCGTTGGTGTCGGAGCTTGAGAAACTTCGTATCCCCGCTTT
GGACTTTGATCATCTCAACGAGCCCAATCTTTCGCATCACAACAACAATA
GCAACAACAGCAACAACAACCACAACAACAACAACAACAACAACAACAAC
CCCAACAAGCCCAACCCCAAACCCAACAACAACAACCCCAACAACAACAA
CAACAACAACAACAATAATCTCACCAACAATAATAATAATCTCAACACCA
ACAACAGTAGTACCTCAAACACCAACTTCCCATTGCCTGTGCCCTCGCCA
ACCATCGTGGACCCGGAGATCTATCCTTACCCCCCTACACCGGGCCTGCT
TACCGCCGATCAGCAGCTCAGTGCGTTTGCCTCCCCCACGTGGACGCCAT
CTCGTCCACCTGCGAGTGCCATGTCATCCAGTTCTCTTCCTCCTCGTTCT
CCACCTGCCGCCGCCGACAGTAACACTCAACCCTCTTCGTCGTTCCTTCT
TGGCAGAACTCTTGGAGATTTTTCCCGTCACTCGCACTCGCATAACACGC
CGTCGCTCGACTCCACTTCGCTGGATGCGCTGTCGTTTGACGCCTCGTTT
GGAGCCGCTCGTGCGCCACAGTTTGCCGATCTGGACGCGAGGGACTCTGT
GCACGCGCAGAAGCACCCGTTTTCAGCCATGAGGAACTCCAATGGTGATG
CCATTGTGTTGGCCAATCTGTTCCCGCCCAGCGCTACCGTGGCTTCTACC
ACCGCCAAGCCGTTTGAGCAGCGACGGGAGTTGTCGCATGTGCAGCATGC
GGACTCCCATCATGTGAAGCAACATGCACATAGTCGTCAGTCTTCGCCGC
AGCAACTTGAGGCTGCGCATGGCCTTTCGGCGCACTCCATTGGTGTGCCG
GACACGTCCGGTCGTTCGTCGCCCATGCAAAGCGCTGCGGGCGCGGTGCA
GGAGCAGCCCAAGGCGCCGCAGGACTGTTAGCTGATGAGAAGGTAAGCTT
TTTCCCTCCATGTACTTTTTTTTTTTTTTTCCCCTGTTGCCCAACTGCTG
GTCGGCTGTTTGTGCGTTTTCGTGAAACAGCTGTTCTGGCGCTCGTTGAG
CGCACGTTGGTGAACGTTGCGCGGTGGCGATCGGGCCAGGTTGGGATGAG
GTGCGATTTGCTAGGCTTGTTCTTGACTGGATTTACTAACTAATCGTTTT
GATGCCTGCGGAAATGACGAACAGGATTGTTTCTTTTCCTCAAGCATCAG
TTGA
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Coding sequence (CDS) from alignment at tig00000950_pilon:183278..185431-

>Ggra370.t1 ID=Ggra370.t1|Name=Ggra370.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1593bp|location=Sequence derived from alignment at tig00000950_pilon:183278..185431- (Gracilaria gracilis GNS1m male)
ATGGCCCGCGTGTCCACGCATCTCGAGCAGCTCGTGCGCGAGGCCGAGGT
GCTATCGAGCATCAAGAACGACGTGCCCAACGCCTGGAAGATCCTCGAGT
TGGAAATCGGCCGCGCGCGCGCCGCCGTCGTGCGCGCCGTCGACGCCGAC
CACTCCTTACCGTTGCACCCCGCCTCGTCGTCGGACGCCTGTGTGCCGAC
GTCCTCCGCCACGCTGCATGACCACGCGCCGAGACACTCCGTGCGCAAGC
GCGTCAAGCTGCGCGTCCCCGCCGATCAGTACCCCGAGTACAACTTTGTG
GGGCGCTTGTTGGGCCCGCGCGGCGCTACGCTCAAGCGCTTGGAGCGTGA
TACGGGTTGCCGTATCATGATCCGTGGAAAGGGAAGCATTCGTAAGGATA
AGGAGGCTGAAGTTCGCGGAAAGCCCGGTTGGGAGCATGTGTTCAACGAG
CCGTTGCATGTTGTTATCGAGGTTGTGGATTCGCCCGATGAGCTTTCGGC
TAGCCGCATTCTCAACCATGCCAAGCAGCTGGTGGAGATTTTGCTCATCC
CCGTCCCGGAGGAGCGTGACTCTCTTAAACGCGCTCAGCTTCGTGACCTT
GCCATTCTCAACGGCACCCATCGAAGTGTGTCCGATTTGCTTGGCGCCAC
GCCGCACAATATGCCGCTTTCCACCGTGCATCGTTCCAATCCGCTCGCTA
CTTCGCCGCCGCCGTTACGACGCGCACAATCTCAACATACAAAGCCGTCG
CAAAAGATGTATGCTAATGATTATGCCAACATGTTTGAGCCCTTGTTACC
GTTTGCTCGTCATAATTCTTACTCGCCGCCTGTGCCGTCGCCGCCGCGTG
CCTTGCATAACCTGGCGTCGTATTCGCAGCCTAATTCTAGTACCTCAAAC
ACCAACTTCCCATTGCCTGTGCCCTCGCCAACCATCGTGGACCCGGAGAT
CTATCCTTACCCCCCTACACCGGGCCTGCTTACCGCCGATCAGCAGCTCA
GTGCGTTTGCCTCCCCCACGTGGACGCCATCTCGTCCACCTGCGAGTGCC
ATGTCATCCAGTTCTCTTCCTCCTCGTTCTCCACCTGCCGCCGCCGACAG
TAACACTCAACCCTCTTCGTCGTTCCTTCTTGGCAGAACTCTTGGAGATT
TTTCCCGTCACTCGCACTCGCATAACACGCCGTCGCTCGACTCCACTTCG
CTGGATGCGCTGTCGTTTGACGCCTCGTTTGGAGCCGCTCGTGCGCCACA
GTTTGCCGATCTGGACGCGAGGGACTCTGTGCACGCGCAGAAGCACCCGT
TTTCAGCCATGAGGAACTCCAATGGTGATGCCATTGTGTTGGCCAATCTG
TTCCCGCCCAGCGCTACCGTGGCTTCTACCACCGCCAAGCCGTTTGAGCA
GCGACGGGAGTTGTCGCATGTGCAGCATGCGGACTCCCATCATGTGAAGC
AACATGCACATAGTCGTCAGTCTTCGCCGCAGCAACTTGAGGCTGCGCAT
GGCCTTTCGGCGCACTCCATTGGTGTGCCGGACACGTCCGGTCGACTGTT
AGCTGATGAGAAGGATTGTTTCTTTTCCTCAAGCATCAGTTGA
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