Ggra3610.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3610.t1
Unique NameGgra3610.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:259213..260700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707608.1
Preferred nameSRP54
PFAMsSRP54,SRP54_N,SRP_SPB
Max annot lvl2759|Eukaryota
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005048,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006617,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008312,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022607,GO:0030942,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065003,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue8.54e-208
EggNOG OGsCOG0541@1|root,KOG0780@2759|Eukaryota
EC3.6.5.4
Description7S RNA binding
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3610Ggra3610Gracilaria gracilis GNS1m malegenetig00000850_pilon 259213..260700 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3610.t1.start1Ggra3610.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 259213..259215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3610.t1.CDS1Ggra3610.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 259213..260700 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3610.t1.exon1Ggra3610.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 259213..260700 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3610.t1.stop1Ggra3610.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 260698..260700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3610.t1Ggra3610.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 259213..260700 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3610.t1 ID=Ggra3610.t1|Name=Ggra3610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp
MVLEGLGSRITGALRKMTNSTVIDEEALKEMLKEITHALLEADVNIKNVA
QLRKNVTNRVKLEELAAGVNKRKLIQKAVFDELCSMLDPETKPVVLKRGK
PNVVMFVGLQGNGKTTSCVKYAYYHQRKGWKPGLVCADTFRAGAFDQLKQ
NATKAKVPFIGSYTETDPVKIATDGVERFKNEKCDLIIVDTSGRHKQEQA
LFAEMEQMADTLKPTDIIFVMDSSIGQAAYDQALAFKNKVSVGSVIITKL
DGHAKGGGALSAVSATRSPITFIGTGEHMDEFEPFDTQAFVGRLLGMGDV
SGLVNTIKEAGLHENVEMYKRITEGVFTLRDMYDQLESISKLGPLNKVMG
MIPGMSEMMKNTNGVDGSVRIKRFQHIMDSMTMDEMENPKVNFTASRKER
IARGSGRHPVEVEELLVEYKRFSKVVGKVGKMSKKNMNIDQLSRNTSQTF
QQFMDPRMMAQLGGQGGMQSMMKQLAKSMDGKGGLGALAGLKGLK*
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spliced messenger RNA

>Ggra3610.t1 ID=Ggra3610.t1|Name=Ggra3610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000850_pilon:259213..260700+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTAGAAGGCTTGGGCAGCCGGATTACCGGCGCCCTGCGCAAGAT
GACCAACTCGACAGTCATCGATGAAGAAGCGCTGAAGGAAATGCTGAAGG
AAATTACGCATGCGCTCCTCGAAGCTGATGTCAATATCAAAAATGTCGCT
CAACTGAGAAAGAATGTTACCAATCGCGTAAAACTTGAAGAGCTTGCTGC
CGGCGTCAATAAGCGCAAACTCATTCAGAAAGCTGTGTTTGATGAGCTCT
GTTCAATGCTTGATCCGGAAACCAAACCAGTTGTACTGAAACGCGGGAAA
CCGAACGTTGTCATGTTCGTAGGCTTGCAGGGTAACGGTAAGACAACTTC
TTGTGTCAAGTACGCGTATTATCACCAAAGGAAGGGTTGGAAGCCTGGTC
TGGTATGCGCCGATACCTTCCGTGCTGGAGCTTTCGATCAGCTCAAACAG
AATGCTACCAAGGCGAAAGTTCCTTTCATTGGTTCTTACACAGAGACTGA
CCCTGTTAAGATCGCCACAGATGGTGTTGAAAGATTTAAGAATGAGAAGT
GTGATCTCATCATCGTTGATACCTCGGGTCGGCATAAACAAGAGCAGGCC
CTTTTTGCTGAAATGGAGCAAATGGCAGACACGTTGAAGCCTACCGACAT
TATATTTGTTATGGATTCGTCCATTGGTCAGGCTGCCTACGACCAAGCGC
TCGCCTTCAAAAACAAAGTCAGTGTTGGCTCTGTCATCATCACCAAACTG
GATGGACATGCAAAAGGTGGTGGCGCTCTTTCTGCTGTTTCTGCCACGCG
CTCTCCTATTACTTTTATTGGTACAGGTGAACACATGGACGAATTCGAGC
CTTTTGACACTCAGGCTTTTGTTGGTAGACTGCTCGGTATGGGCGATGTC
TCGGGACTGGTGAACACGATCAAAGAGGCGGGTCTTCATGAGAATGTTGA
AATGTACAAACGCATCACAGAGGGCGTATTCACGTTACGCGATATGTACG
ACCAACTTGAGTCCATTTCGAAGCTTGGTCCTCTCAACAAGGTCATGGGC
ATGATTCCTGGTATGTCCGAGATGATGAAGAACACGAACGGTGTCGATGG
GTCTGTGCGGATAAAGCGTTTTCAGCACATCATGGATTCAATGACCATGG
ACGAGATGGAGAACCCTAAGGTGAACTTCACTGCAAGTAGAAAGGAACGG
ATAGCGAGAGGGAGCGGGAGACATCCTGTAGAAGTTGAAGAACTGCTTGT
AGAGTACAAGCGTTTTTCCAAGGTCGTTGGAAAGGTTGGCAAAATGTCCA
AGAAGAACATGAACATAGATCAACTTTCGAGGAATACATCTCAGACTTTC
CAGCAGTTTATGGATCCAAGAATGATGGCACAGCTGGGTGGACAGGGAGG
AATGCAATCGATGATGAAGCAACTCGCAAAGTCAATGGATGGAAAGGGTG
GTTTGGGAGCACTTGCTGGGCTGAAAGGGTTAAAATAG
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protein sequence of Ggra3610.t1

>Ggra3610.t1 ID=Ggra3610.t1|Name=Ggra3610.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MVLEGLGSRITGALRKMTNSTVIDEEALKEMLKEITHALLEADVNIKNVA
QLRKNVTNRVKLEELAAGVNKRKLIQKAVFDELCSMLDPETKPVVLKRGK
PNVVMFVGLQGNGKTTSCVKYAYYHQRKGWKPGLVCADTFRAGAFDQLKQ
NATKAKVPFIGSYTETDPVKIATDGVERFKNEKCDLIIVDTSGRHKQEQA
LFAEMEQMADTLKPTDIIFVMDSSIGQAAYDQALAFKNKVSVGSVIITKL
DGHAKGGGALSAVSATRSPITFIGTGEHMDEFEPFDTQAFVGRLLGMGDV
SGLVNTIKEAGLHENVEMYKRITEGVFTLRDMYDQLESISKLGPLNKVMG
MIPGMSEMMKNTNGVDGSVRIKRFQHIMDSMTMDEMENPKVNFTASRKER
IARGSGRHPVEVEELLVEYKRFSKVVGKVGKMSKKNMNIDQLSRNTSQTF
QQFMDPRMMAQLGGQGGMQSMMKQLAKSMDGKGGLGALAGLKGLK*
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mRNA from alignment at tig00000850_pilon:259213..260700+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3610.t1 ID=Ggra3610.t1|Name=Ggra3610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000850_pilon:259213..260700+ (Gracilaria gracilis GNS1m male)
ATGGTGTTAGAAGGCTTGGGCAGCCGGATTACCGGCGCCCTGCGCAAGAT
GACCAACTCGACAGTCATCGATGAAGAAGCGCTGAAGGAAATGCTGAAGG
AAATTACGCATGCGCTCCTCGAAGCTGATGTCAATATCAAAAATGTCGCT
CAACTGAGAAAGAATGTTACCAATCGCGTAAAACTTGAAGAGCTTGCTGC
CGGCGTCAATAAGCGCAAACTCATTCAGAAAGCTGTGTTTGATGAGCTCT
GTTCAATGCTTGATCCGGAAACCAAACCAGTTGTACTGAAACGCGGGAAA
CCGAACGTTGTCATGTTCGTAGGCTTGCAGGGTAACGGTAAGACAACTTC
TTGTGTCAAGTACGCGTATTATCACCAAAGGAAGGGTTGGAAGCCTGGTC
TGGTATGCGCCGATACCTTCCGTGCTGGAGCTTTCGATCAGCTCAAACAG
AATGCTACCAAGGCGAAAGTTCCTTTCATTGGTTCTTACACAGAGACTGA
CCCTGTTAAGATCGCCACAGATGGTGTTGAAAGATTTAAGAATGAGAAGT
GTGATCTCATCATCGTTGATACCTCGGGTCGGCATAAACAAGAGCAGGCC
CTTTTTGCTGAAATGGAGCAAATGGCAGACACGTTGAAGCCTACCGACAT
TATATTTGTTATGGATTCGTCCATTGGTCAGGCTGCCTACGACCAAGCGC
TCGCCTTCAAAAACAAAGTCAGTGTTGGCTCTGTCATCATCACCAAACTG
GATGGACATGCAAAAGGTGGTGGCGCTCTTTCTGCTGTTTCTGCCACGCG
CTCTCCTATTACTTTTATTGGTACAGGTGAACACATGGACGAATTCGAGC
CTTTTGACACTCAGGCTTTTGTTGGTAGACTGCTCGGTATGGGCGATGTC
TCGGGACTGGTGAACACGATCAAAGAGGCGGGTCTTCATGAGAATGTTGA
AATGTACAAACGCATCACAGAGGGCGTATTCACGTTACGCGATATGTACG
ACCAACTTGAGTCCATTTCGAAGCTTGGTCCTCTCAACAAGGTCATGGGC
ATGATTCCTGGTATGTCCGAGATGATGAAGAACACGAACGGTGTCGATGG
GTCTGTGCGGATAAAGCGTTTTCAGCACATCATGGATTCAATGACCATGG
ACGAGATGGAGAACCCTAAGGTGAACTTCACTGCAAGTAGAAAGGAACGG
ATAGCGAGAGGGAGCGGGAGACATCCTGTAGAAGTTGAAGAACTGCTTGT
AGAGTACAAGCGTTTTTCCAAGGTCGTTGGAAAGGTTGGCAAAATGTCCA
AGAAGAACATGAACATAGATCAACTTTCGAGGAATACATCTCAGACTTTC
CAGCAGTTTATGGATCCAAGAATGATGGCACAGCTGGGTGGACAGGGAGG
AATGCAATCGATGATGAAGCAACTCGCAAAGTCAATGGATGGAAAGGGTG
GTTTGGGAGCACTTGCTGGGCTGAAAGGGTTAAAATAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:259213..260700+

>Ggra3610.t1 ID=Ggra3610.t1|Name=Ggra3610.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000850_pilon:259213..260700+ (Gracilaria gracilis GNS1m male)
ATGGTGTTAGAAGGCTTGGGCAGCCGGATTACCGGCGCCCTGCGCAAGAT
GACCAACTCGACAGTCATCGATGAAGAAGCGCTGAAGGAAATGCTGAAGG
AAATTACGCATGCGCTCCTCGAAGCTGATGTCAATATCAAAAATGTCGCT
CAACTGAGAAAGAATGTTACCAATCGCGTAAAACTTGAAGAGCTTGCTGC
CGGCGTCAATAAGCGCAAACTCATTCAGAAAGCTGTGTTTGATGAGCTCT
GTTCAATGCTTGATCCGGAAACCAAACCAGTTGTACTGAAACGCGGGAAA
CCGAACGTTGTCATGTTCGTAGGCTTGCAGGGTAACGGTAAGACAACTTC
TTGTGTCAAGTACGCGTATTATCACCAAAGGAAGGGTTGGAAGCCTGGTC
TGGTATGCGCCGATACCTTCCGTGCTGGAGCTTTCGATCAGCTCAAACAG
AATGCTACCAAGGCGAAAGTTCCTTTCATTGGTTCTTACACAGAGACTGA
CCCTGTTAAGATCGCCACAGATGGTGTTGAAAGATTTAAGAATGAGAAGT
GTGATCTCATCATCGTTGATACCTCGGGTCGGCATAAACAAGAGCAGGCC
CTTTTTGCTGAAATGGAGCAAATGGCAGACACGTTGAAGCCTACCGACAT
TATATTTGTTATGGATTCGTCCATTGGTCAGGCTGCCTACGACCAAGCGC
TCGCCTTCAAAAACAAAGTCAGTGTTGGCTCTGTCATCATCACCAAACTG
GATGGACATGCAAAAGGTGGTGGCGCTCTTTCTGCTGTTTCTGCCACGCG
CTCTCCTATTACTTTTATTGGTACAGGTGAACACATGGACGAATTCGAGC
CTTTTGACACTCAGGCTTTTGTTGGTAGACTGCTCGGTATGGGCGATGTC
TCGGGACTGGTGAACACGATCAAAGAGGCGGGTCTTCATGAGAATGTTGA
AATGTACAAACGCATCACAGAGGGCGTATTCACGTTACGCGATATGTACG
ACCAACTTGAGTCCATTTCGAAGCTTGGTCCTCTCAACAAGGTCATGGGC
ATGATTCCTGGTATGTCCGAGATGATGAAGAACACGAACGGTGTCGATGG
GTCTGTGCGGATAAAGCGTTTTCAGCACATCATGGATTCAATGACCATGG
ACGAGATGGAGAACCCTAAGGTGAACTTCACTGCAAGTAGAAAGGAACGG
ATAGCGAGAGGGAGCGGGAGACATCCTGTAGAAGTTGAAGAACTGCTTGT
AGAGTACAAGCGTTTTTCCAAGGTCGTTGGAAAGGTTGGCAAAATGTCCA
AGAAGAACATGAACATAGATCAACTTTCGAGGAATACATCTCAGACTTTC
CAGCAGTTTATGGATCCAAGAATGATGGCACAGCTGGGTGGACAGGGAGG
AATGCAATCGATGATGAAGCAACTCGCAAAGTCAATGGATGGAAAGGGTG
GTTTGGGAGCACTTGCTGGGCTGAAAGGGTTAAAATAG
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