Ggra361.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra361.t1
Unique NameGgra361.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:156846..157712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1234409.C683_0825
PFAMsEndonuclea_NS_2
Max annot lvl91061|Bacilli
KEGG koko:K15051
Evalue0.000786
EggNOG OGsCOG2169@1|root,COG2169@2|Bacteria,1TR37@1239|Firmicutes,4HJ4Q@91061|Bacilli,4B6AG@81852|Enterococcaceae
DescriptionDNA/RNA non-specific endonuclease
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra361Ggra361Gracilaria gracilis GNS1m malegenetig00000950_pilon 156846..157712 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra361.t1.stop1Ggra361.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 156846..156848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra361.t1.CDS1Ggra361.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 156846..157712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra361.t1.exon1Ggra361.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 156846..157712 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra361.t1.start1Ggra361.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 157710..157712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra361.t1Ggra361.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 156846..157712 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra361.t1 ID=Ggra361.t1|Name=Ggra361.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MYSFQAFLAALILSLSIVSGISISDSIIWSSDNITAKTIRDTTSGDLYAS
GHQKVAYDDVALSGDGGFDLFNTSVRAARCATFQDNANLNSFAAFNIANS
GARITYHNGNNNNGGNPFQVRATRTDIRVTETSYNARLGSEPYNNGVPPG
WQTMLNQVGGNVNGVHRGHLGPARLGGSGLDVRNIAAMYQRVNTRHLAIW
ERMVNAAFDNNLVPEPDCIDYRCIAYYAPGRDSPDSVRTTAWLIRNNNRQ
MWFDVTIPNQPNLPGTAATIHWDATANLFPSLNHRGRP*
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spliced messenger RNA

>Ggra361.t1 ID=Ggra361.t1|Name=Ggra361.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000950_pilon:156846..157712- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCCTTCCAAGCCTTTCTCGCAGCTCTAATCCTGTCCCTTTCTAT
TGTAAGTGGGATCAGCATTTCCGACTCCATCATTTGGTCATCGGATAACA
TCACCGCAAAGACTATTAGGGACACCACGTCAGGAGACCTCTATGCAAGT
GGGCACCAGAAAGTGGCATACGATGATGTGGCTTTATCTGGAGATGGAGG
GTTTGATCTTTTCAATACTTCTGTGCGTGCGGCAAGGTGTGCAACTTTCC
AGGACAACGCTAACTTGAACAGTTTTGCCGCCTTTAACATCGCCAATTCG
GGTGCTAGAATTACATACCACAATGGCAACAACAACAATGGTGGGAATCC
GTTCCAGGTCCGGGCGACCCGAACTGATATTCGTGTGACGGAAACCAGTT
ACAATGCTAGACTCGGTTCGGAACCGTACAACAATGGAGTTCCACCAGGC
TGGCAAACAATGCTGAATCAAGTAGGAGGAAATGTAAATGGTGTTCATCG
TGGGCACCTGGGACCAGCTCGTCTCGGAGGATCAGGACTTGACGTTCGGA
ACATTGCTGCAATGTACCAGCGCGTGAATACGCGCCATCTTGCAATCTGG
GAGCGAATGGTGAACGCGGCTTTCGACAACAATCTCGTTCCGGAGCCCGA
CTGCATTGACTATCGTTGCATCGCCTACTACGCACCGGGGCGGGACAGTC
CGGACTCTGTTCGCACCACGGCCTGGCTCATTCGCAACAATAATCGTCAA
ATGTGGTTTGATGTGACCATTCCCAACCAACCGAATCTGCCCGGCACCGC
AGCAACAATTCACTGGGATGCCACTGCCAATTTGTTCCCGTCATTGAACC
ACAGGGGACGCCCGTAA
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protein sequence of Ggra361.t1

>Ggra361.t1 ID=Ggra361.t1|Name=Ggra361.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MYSFQAFLAALILSLSIVSGISISDSIIWSSDNITAKTIRDTTSGDLYAS
GHQKVAYDDVALSGDGGFDLFNTSVRAARCATFQDNANLNSFAAFNIANS
GARITYHNGNNNNGGNPFQVRATRTDIRVTETSYNARLGSEPYNNGVPPG
WQTMLNQVGGNVNGVHRGHLGPARLGGSGLDVRNIAAMYQRVNTRHLAIW
ERMVNAAFDNNLVPEPDCIDYRCIAYYAPGRDSPDSVRTTAWLIRNNNRQ
MWFDVTIPNQPNLPGTAATIHWDATANLFPSLNHRGRP*
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mRNA from alignment at tig00000950_pilon:156846..157712-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra361.t1 ID=Ggra361.t1|Name=Ggra361.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000950_pilon:156846..157712- (Gracilaria gracilis GNS1m male)
ATGTATTCCTTCCAAGCCTTTCTCGCAGCTCTAATCCTGTCCCTTTCTAT
TGTAAGTGGGATCAGCATTTCCGACTCCATCATTTGGTCATCGGATAACA
TCACCGCAAAGACTATTAGGGACACCACGTCAGGAGACCTCTATGCAAGT
GGGCACCAGAAAGTGGCATACGATGATGTGGCTTTATCTGGAGATGGAGG
GTTTGATCTTTTCAATACTTCTGTGCGTGCGGCAAGGTGTGCAACTTTCC
AGGACAACGCTAACTTGAACAGTTTTGCCGCCTTTAACATCGCCAATTCG
GGTGCTAGAATTACATACCACAATGGCAACAACAACAATGGTGGGAATCC
GTTCCAGGTCCGGGCGACCCGAACTGATATTCGTGTGACGGAAACCAGTT
ACAATGCTAGACTCGGTTCGGAACCGTACAACAATGGAGTTCCACCAGGC
TGGCAAACAATGCTGAATCAAGTAGGAGGAAATGTAAATGGTGTTCATCG
TGGGCACCTGGGACCAGCTCGTCTCGGAGGATCAGGACTTGACGTTCGGA
ACATTGCTGCAATGTACCAGCGCGTGAATACGCGCCATCTTGCAATCTGG
GAGCGAATGGTGAACGCGGCTTTCGACAACAATCTCGTTCCGGAGCCCGA
CTGCATTGACTATCGTTGCATCGCCTACTACGCACCGGGGCGGGACAGTC
CGGACTCTGTTCGCACCACGGCCTGGCTCATTCGCAACAATAATCGTCAA
ATGTGGTTTGATGTGACCATTCCCAACCAACCGAATCTGCCCGGCACCGC
AGCAACAATTCACTGGGATGCCACTGCCAATTTGTTCCCGTCATTGAACC
ACAGGGGACGCCCGTAA
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Coding sequence (CDS) from alignment at tig00000950_pilon:156846..157712-

>Ggra361.t1 ID=Ggra361.t1|Name=Ggra361.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000950_pilon:156846..157712- (Gracilaria gracilis GNS1m male)
ATGTATTCCTTCCAAGCCTTTCTCGCAGCTCTAATCCTGTCCCTTTCTAT
TGTAAGTGGGATCAGCATTTCCGACTCCATCATTTGGTCATCGGATAACA
TCACCGCAAAGACTATTAGGGACACCACGTCAGGAGACCTCTATGCAAGT
GGGCACCAGAAAGTGGCATACGATGATGTGGCTTTATCTGGAGATGGAGG
GTTTGATCTTTTCAATACTTCTGTGCGTGCGGCAAGGTGTGCAACTTTCC
AGGACAACGCTAACTTGAACAGTTTTGCCGCCTTTAACATCGCCAATTCG
GGTGCTAGAATTACATACCACAATGGCAACAACAACAATGGTGGGAATCC
GTTCCAGGTCCGGGCGACCCGAACTGATATTCGTGTGACGGAAACCAGTT
ACAATGCTAGACTCGGTTCGGAACCGTACAACAATGGAGTTCCACCAGGC
TGGCAAACAATGCTGAATCAAGTAGGAGGAAATGTAAATGGTGTTCATCG
TGGGCACCTGGGACCAGCTCGTCTCGGAGGATCAGGACTTGACGTTCGGA
ACATTGCTGCAATGTACCAGCGCGTGAATACGCGCCATCTTGCAATCTGG
GAGCGAATGGTGAACGCGGCTTTCGACAACAATCTCGTTCCGGAGCCCGA
CTGCATTGACTATCGTTGCATCGCCTACTACGCACCGGGGCGGGACAGTC
CGGACTCTGTTCGCACCACGGCCTGGCTCATTCGCAACAATAATCGTCAA
ATGTGGTTTGATGTGACCATTCCCAACCAACCGAATCTGCCCGGCACCGC
AGCAACAATTCACTGGGATGCCACTGCCAATTTGTTCCCGTCATTGAACC
ACAGGGGACGCCCGTAA
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