Ggra3587.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3587.t1
Unique NameGgra3587.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:173338..174470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3587Ggra3587Gracilaria gracilis GNS1m malegenetig00000850_pilon 173338..174470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3587.t1Ggra3587.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 173338..174470 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3587.t1.start1Ggra3587.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 173338..173340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3587.t1.CDS1Ggra3587.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 173338..173545 +
Ggra3587.t1.CDS2Ggra3587.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 173656..174470 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3587.t1.exon1Ggra3587.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 173338..173545 +
Ggra3587.t1.exon2Ggra3587.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 173656..174470 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3587.t1.intron1Ggra3587.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 173546..173655 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3587.t1.stop1Ggra3587.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 174468..174470 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3587.t1 ID=Ggra3587.t1|Name=Ggra3587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MKGRAAVKTLSVLGVVAIVCSSVCVSGASPSRSNTTLERNLTDALNELLG
KNASAVKLSKQVYCSSSSSCRSGCSCVGTQFYQSLGTLCLDSEQYYSEAS
LCSCSSDSDCGDFCVDRSYCYTCEGIAVSNALAACFYGSDSSSITIDAPA
SAPTTSAPDTVATGSAEGGANNNAQVVPSENEPCVETEWLKNNGFGDGIL
REHGVSKTLCMRGLPCGTEGHLLRACDAHGRCKLQTFRDACALSGDCGVK
YARVSRLSHGADWTRVRAARADGRSLTLTSLSVAVEGSWVRASYGVARVG
DALIASGGGRAVDVAVLALADFAAHARFLCHTAAAKLAAR*
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spliced messenger RNA

>Ggra3587.t1 ID=Ggra3587.t1|Name=Ggra3587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000850_pilon:173338..174470+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGGCGTGCTGCTGTCAAGACGCTGAGCGTCCTCGGGGTGGTTGC
GATTGTGTGCTCATCCGTTTGTGTGTCTGGCGCTTCTCCAAGCAGGAGCA
ACACAACATTGGAACGAAACTTGACAGATGCTTTGAACGAACTGTTGGGG
AAGAATGCATCGGCTGTGAAGTTGAGCAAGCAGGTGTATTGTAGTTCGTC
GTCGTCGTGCCGCTCTGGTTGCAGCTGTGTTGGTACGCAGTTTTACCAAT
CGTTAGGAACTCTTTGCTTGGACTCGGAGCAATACTACTCGGAAGCATCA
TTGTGTTCGTGTTCGTCGGACAGTGACTGCGGCGACTTTTGCGTGGACAG
GAGCTATTGCTACACTTGCGAGGGAATAGCGGTTTCTAACGCGCTCGCAG
CTTGTTTTTATGGCTCGGATAGTAGCTCCATCACCATTGACGCCCCGGCG
AGTGCGCCCACGACGAGTGCGCCAGACACGGTTGCTACCGGGTCGGCAGA
AGGCGGCGCCAACAACAACGCACAGGTGGTGCCCAGCGAGAACGAGCCGT
GCGTGGAGACGGAATGGCTCAAGAACAACGGCTTTGGCGACGGCATTCTG
CGCGAGCACGGCGTATCCAAGACGCTGTGCATGCGCGGGCTGCCGTGCGG
CACCGAAGGGCATCTGCTGCGTGCGTGCGACGCGCACGGCCGCTGCAAGC
TGCAGACGTTCCGCGACGCGTGCGCGCTGAGCGGCGACTGCGGCGTCAAG
TACGCGCGCGTGTCGCGGCTGAGCCACGGCGCGGACTGGACGCGCGTGCG
CGCGGCGCGCGCAGACGGCCGCAGCTTGACGCTCACCAGCCTGAGCGTGG
CGGTGGAGGGCTCGTGGGTGCGCGCGAGCTACGGCGTGGCGCGTGTGGGC
GACGCGCTGATCGCGAGCGGCGGCGGGCGCGCGGTGGACGTGGCGGTGCT
GGCGCTGGCCGACTTTGCGGCGCACGCGCGCTTCCTGTGCCACACCGCCG
CCGCCAAGCTCGCCGCGCGCTGA
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protein sequence of Ggra3587.t1

>Ggra3587.t1 ID=Ggra3587.t1|Name=Ggra3587.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MKGRAAVKTLSVLGVVAIVCSSVCVSGASPSRSNTTLERNLTDALNELLG
KNASAVKLSKQVYCSSSSSCRSGCSCVGTQFYQSLGTLCLDSEQYYSEAS
LCSCSSDSDCGDFCVDRSYCYTCEGIAVSNALAACFYGSDSSSITIDAPA
SAPTTSAPDTVATGSAEGGANNNAQVVPSENEPCVETEWLKNNGFGDGIL
REHGVSKTLCMRGLPCGTEGHLLRACDAHGRCKLQTFRDACALSGDCGVK
YARVSRLSHGADWTRVRAARADGRSLTLTSLSVAVEGSWVRASYGVARVG
DALIASGGGRAVDVAVLALADFAAHARFLCHTAAAKLAAR*
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mRNA from alignment at tig00000850_pilon:173338..174470+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3587.t1 ID=Ggra3587.t1|Name=Ggra3587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1133bp|location=Sequence derived from alignment at tig00000850_pilon:173338..174470+ (Gracilaria gracilis GNS1m male)
ATGAAGGGGCGTGCTGCTGTCAAGACGCTGAGCGTCCTCGGGGTGGTTGC
GATTGTGTGCTCATCCGTTTGTGTGTCTGGCGCTTCTCCAAGCAGGAGCA
ACACAACATTGGAACGAAACTTGACAGATGCTTTGAACGAACTGTTGGGG
AAGAATGCATCGGCTGTGAAGTTGAGCAAGCAGGTGTATTGTAGTTCGTC
GTCGTCGTGTAAGTTGAGTGAAAATGTTGTAATAGTGCACGTGGGGGCGC
AAATTTGAATGCGAGTACTGACATGATGAGCGCGGTGTACATGAAACTGC
AACACGTCGAAACGATAGGCCGCTCTGGTTGCAGCTGTGTTGGTACGCAG
TTTTACCAATCGTTAGGAACTCTTTGCTTGGACTCGGAGCAATACTACTC
GGAAGCATCATTGTGTTCGTGTTCGTCGGACAGTGACTGCGGCGACTTTT
GCGTGGACAGGAGCTATTGCTACACTTGCGAGGGAATAGCGGTTTCTAAC
GCGCTCGCAGCTTGTTTTTATGGCTCGGATAGTAGCTCCATCACCATTGA
CGCCCCGGCGAGTGCGCCCACGACGAGTGCGCCAGACACGGTTGCTACCG
GGTCGGCAGAAGGCGGCGCCAACAACAACGCACAGGTGGTGCCCAGCGAG
AACGAGCCGTGCGTGGAGACGGAATGGCTCAAGAACAACGGCTTTGGCGA
CGGCATTCTGCGCGAGCACGGCGTATCCAAGACGCTGTGCATGCGCGGGC
TGCCGTGCGGCACCGAAGGGCATCTGCTGCGTGCGTGCGACGCGCACGGC
CGCTGCAAGCTGCAGACGTTCCGCGACGCGTGCGCGCTGAGCGGCGACTG
CGGCGTCAAGTACGCGCGCGTGTCGCGGCTGAGCCACGGCGCGGACTGGA
CGCGCGTGCGCGCGGCGCGCGCAGACGGCCGCAGCTTGACGCTCACCAGC
CTGAGCGTGGCGGTGGAGGGCTCGTGGGTGCGCGCGAGCTACGGCGTGGC
GCGTGTGGGCGACGCGCTGATCGCGAGCGGCGGCGGGCGCGCGGTGGACG
TGGCGGTGCTGGCGCTGGCCGACTTTGCGGCGCACGCGCGCTTCCTGTGC
CACACCGCCGCCGCCAAGCTCGCCGCGCGCTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:173338..174470+

>Ggra3587.t1 ID=Ggra3587.t1|Name=Ggra3587.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000850_pilon:173338..174470+ (Gracilaria gracilis GNS1m male)
ATGAAGGGGCGTGCTGCTGTCAAGACGCTGAGCGTCCTCGGGGTGGTTGC
GATTGTGTGCTCATCCGTTTGTGTGTCTGGCGCTTCTCCAAGCAGGAGCA
ACACAACATTGGAACGAAACTTGACAGATGCTTTGAACGAACTGTTGGGG
AAGAATGCATCGGCTGTGAAGTTGAGCAAGCAGGTGTATTGTAGTTCGTC
GTCGTCGTGCCGCTCTGGTTGCAGCTGTGTTGGTACGCAGTTTTACCAAT
CGTTAGGAACTCTTTGCTTGGACTCGGAGCAATACTACTCGGAAGCATCA
TTGTGTTCGTGTTCGTCGGACAGTGACTGCGGCGACTTTTGCGTGGACAG
GAGCTATTGCTACACTTGCGAGGGAATAGCGGTTTCTAACGCGCTCGCAG
CTTGTTTTTATGGCTCGGATAGTAGCTCCATCACCATTGACGCCCCGGCG
AGTGCGCCCACGACGAGTGCGCCAGACACGGTTGCTACCGGGTCGGCAGA
AGGCGGCGCCAACAACAACGCACAGGTGGTGCCCAGCGAGAACGAGCCGT
GCGTGGAGACGGAATGGCTCAAGAACAACGGCTTTGGCGACGGCATTCTG
CGCGAGCACGGCGTATCCAAGACGCTGTGCATGCGCGGGCTGCCGTGCGG
CACCGAAGGGCATCTGCTGCGTGCGTGCGACGCGCACGGCCGCTGCAAGC
TGCAGACGTTCCGCGACGCGTGCGCGCTGAGCGGCGACTGCGGCGTCAAG
TACGCGCGCGTGTCGCGGCTGAGCCACGGCGCGGACTGGACGCGCGTGCG
CGCGGCGCGCGCAGACGGCCGCAGCTTGACGCTCACCAGCCTGAGCGTGG
CGGTGGAGGGCTCGTGGGTGCGCGCGAGCTACGGCGTGGCGCGTGTGGGC
GACGCGCTGATCGCGAGCGGCGGCGGGCGCGCGGTGGACGTGGCGGTGCT
GGCGCTGGCCGACTTTGCGGCGCACGCGCGCTTCCTGTGCCACACCGCCG
CCGCCAAGCTCGCCGCGCGCTGA
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