Ggra3537.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3537.t1
Unique NameGgra3537.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:874910..875740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G127224_P01
Max annot lvl35493|Streptophyta
Evalue1.04e-15
EggNOG OGsCOG0596@1|root,KOG1454@2759|Eukaryota,387QX@33090|Viridiplantae,3GVS7@35493|Streptophyta,3M4V6@4447|Liliopsida,3ITWS@38820|Poales
Descriptionregulation of endocannabinoid signaling pathway
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3537Ggra3537Gracilaria gracilis GNS1m malegenetig00000059_pilon 874910..875740 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3537.t1.start1Ggra3537.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 874910..874912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3537.t1.CDS1Ggra3537.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 874910..875740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3537.t1.exon1Ggra3537.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 874910..875740 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3537.t1.stop1Ggra3537.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 875738..875740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3537.t1Ggra3537.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 874910..875740 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3537.t1 ID=Ggra3537.t1|Name=Ggra3537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MEQLSSPNDCPDLTSCPKMEAKKHTTRGPSFTPQEDVGIARAYIKTSEDS
ILGTDRKKKLFFDAITKVYNELYKPANRPSRSTESVRNRTKLLTTKCALF
SGCFVRVIRLNPSAYNEEDKFRMPTALFNGIKMKSPKDDIGEPFKFKEAW
EVLRNHPKFSIDEEITSTSSEADPSSTSRQQTCSKPGTPDQIEKKDVPST
EFSERPQGRKAAKMEFIKQKHYEEKLNVARQALRLQRERASEIKRQNDIS
LFMMTADSSPEAQEFLKSHGSAFSTT*
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spliced messenger RNA

>Ggra3537.t1 ID=Ggra3537.t1|Name=Ggra3537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000059_pilon:874910..875740+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggaacaactctcctcacccaatgactgcccagacctgacgagctgtcc
caagatggaagccaaaaaacataccaccagaggcccgagcttcactccac
aggaagatgtcggcatcgcccgagcatacattaaaacatcggaggattcg
atactgggaacagaccgcaagaagaaattattctttgacgccatcacaaa
agtctataacgagctttataagcctgctaatcgtccctcacgctctacgg
aatctgttcgcaaccgtacaaagcttttaacgacaaagtgcgctctgttc
tctgggtgctttgtgcgcgtaattcgtttaaatccatccgcatacaacga
agaggacaaatttcgcatgccaaccgcgctgtttaatggaatcaagatga
agagtccgaaggatgatataggagagccgtttaagtttaaggaagcatgg
gaagttctccgtaaccatcctaagttttccatcgacgaggaaattacctc
aacctcttcggaagccgatcccagcagcacttctaggcagcaaacatgct
cgaaacctggcacacctgatcagatagagaagaaagatgtcccgtcgaca
gagttctcagaacgcccacaaggtagaaaggcggcaaaaatggagtttat
taaacagaagcactatgaagagaagctgaacgttgctcgccaggcattac
gcctgcagcgcgaacgagcctccgaaataaagaggcagaacgatatatcg
ctgtttatgatgactgctgatagtagtcccgaagcacaggagttcttaaa
atctcacggaagcgcgttctcgacgacctga
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protein sequence of Ggra3537.t1

>Ggra3537.t1 ID=Ggra3537.t1|Name=Ggra3537.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MEQLSSPNDCPDLTSCPKMEAKKHTTRGPSFTPQEDVGIARAYIKTSEDS
ILGTDRKKKLFFDAITKVYNELYKPANRPSRSTESVRNRTKLLTTKCALF
SGCFVRVIRLNPSAYNEEDKFRMPTALFNGIKMKSPKDDIGEPFKFKEAW
EVLRNHPKFSIDEEITSTSSEADPSSTSRQQTCSKPGTPDQIEKKDVPST
EFSERPQGRKAAKMEFIKQKHYEEKLNVARQALRLQRERASEIKRQNDIS
LFMMTADSSPEAQEFLKSHGSAFSTT*
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mRNA from alignment at tig00000059_pilon:874910..875740+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3537.t1 ID=Ggra3537.t1|Name=Ggra3537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000059_pilon:874910..875740+ (Gracilaria gracilis GNS1m male)
atggaacaactctcctcacccaatgactgcccagacctgacgagctgtcc
caagatggaagccaaaaaacataccaccagaggcccgagcttcactccac
aggaagatgtcggcatcgcccgagcatacattaaaacatcggaggattcg
atactgggaacagaccgcaagaagaaattattctttgacgccatcacaaa
agtctataacgagctttataagcctgctaatcgtccctcacgctctacgg
aatctgttcgcaaccgtacaaagcttttaacgacaaagtgcgctctgttc
tctgggtgctttgtgcgcgtaattcgtttaaatccatccgcatacaacga
agaggacaaatttcgcatgccaaccgcgctgtttaatggaatcaagatga
agagtccgaaggatgatataggagagccgtttaagtttaaggaagcatgg
gaagttctccgtaaccatcctaagttttccatcgacgaggaaattacctc
aacctcttcggaagccgatcccagcagcacttctaggcagcaaacatgct
cgaaacctggcacacctgatcagatagagaagaaagatgtcccgtcgaca
gagttctcagaacgcccacaaggtagaaaggcggcaaaaatggagtttat
taaacagaagcactatgaagagaagctgaacgttgctcgccaggcattac
gcctgcagcgcgaacgagcctccgaaataaagaggcagaacgatatatcg
ctgtttatgatgactgctgatagtagtcccgaagcacaggagttcttaaa
atctcacggaagcgcgttctcgacgacctga
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Coding sequence (CDS) from alignment at tig00000059_pilon:874910..875740+

>Ggra3537.t1 ID=Ggra3537.t1|Name=Ggra3537.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000059_pilon:874910..875740+ (Gracilaria gracilis GNS1m male)
atggaacaactctcctcacccaatgactgcccagacctgacgagctgtcc
caagatggaagccaaaaaacataccaccagaggcccgagcttcactccac
aggaagatgtcggcatcgcccgagcatacattaaaacatcggaggattcg
atactgggaacagaccgcaagaagaaattattctttgacgccatcacaaa
agtctataacgagctttataagcctgctaatcgtccctcacgctctacgg
aatctgttcgcaaccgtacaaagcttttaacgacaaagtgcgctctgttc
tctgggtgctttgtgcgcgtaattcgtttaaatccatccgcatacaacga
agaggacaaatttcgcatgccaaccgcgctgtttaatggaatcaagatga
agagtccgaaggatgatataggagagccgtttaagtttaaggaagcatgg
gaagttctccgtaaccatcctaagttttccatcgacgaggaaattacctc
aacctcttcggaagccgatcccagcagcacttctaggcagcaaacatgct
cgaaacctggcacacctgatcagatagagaagaaagatgtcccgtcgaca
gagttctcagaacgcccacaaggtagaaaggcggcaaaaatggagtttat
taaacagaagcactatgaagagaagctgaacgttgctcgccaggcattac
gcctgcagcgcgaacgagcctccgaaataaagaggcagaacgatatatcg
ctgtttatgatgactgctgatagtagtcccgaagcacaggagttcttaaa
atctcacggaagcgcgttctcgacgacctga
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