Ggra3528.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3528.t1
Unique NameGgra3528.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:761424..762777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3528Ggra3528Gracilaria gracilis GNS1m malegenetig00000059_pilon 761424..762777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3528.t1Ggra3528.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 761424..762777 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3528.t1.start1Ggra3528.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 761424..761426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3528.t1.CDS1Ggra3528.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 761424..762545 +
Ggra3528.t1.CDS2Ggra3528.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 762625..762777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3528.t1.exon1Ggra3528.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 761424..762545 +
Ggra3528.t1.exon2Ggra3528.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 762625..762777 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3528.t1.intron1Ggra3528.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 762546..762624 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3528.t1.stop1Ggra3528.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 762775..762777 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3528.t1 ID=Ggra3528.t1|Name=Ggra3528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=425bp
MTAAMYSSRARRRRTTKLRRQRSNAPRAVAAALFFFLLCYEMLVLRPPAA
VKPSLSAHSVASPPPVAAPSSLAASPPAASVSSPSSPSATTLGAGDKTPQ
TTTVNSNIVAKAAVSPPSIASRLASLQKLTSSITPPSTSQSASQSLRVAA
DQEGTQPSPSFHPLHKRHGHGSHSAVAPSLAKMESVAADNDDSSPKPQPS
SSAHKPQASKPEHGADPGAGENFWKWFQDTKESEGSANVTCPPDSERVCL
MFYKFLKKYKIRSVYDISCARNLDWMPPIVRKVGNELWGFKYYCNTNTED
LSRAKEKLAGLSYVEFAPEQWWRTGFTEGIQLLFAWDVLPHIAYGRIWNF
FVKSKAQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNV
TEPGETEKRQLLFYETDMLPDNLQ*
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spliced messenger RNA

>Ggra3528.t1 ID=Ggra3528.t1|Name=Ggra3528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000059_pilon:761424..762777+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCGCCATGTATTCGTCGCGCGCACGTCGTCGTCGTACCACCAA
GCTGCGTCGTCAGCGCTCCAACGCGCCGCGCGCCGTCGCCGCCGCGCTGT
TTTTCTTCCTGTTGTGCTACGAGATGCTGGTGTTGCGCCCGCCTGCCGCG
GTCAAGCCGTCGCTTTCTGCGCACAGCGTTGCTTCGCCGCCGCCGGTTGC
TGCGCCGTCATCGCTGGCTGCGTCGCCGCCGGCTGCTAGTGTTTCGTCGC
CTTCTTCTCCGTCTGCCACCACGCTTGGCGCGGGCGACAAGACGCCGCAG
ACTACGACTGTGAACAGTAATATTGTGGCCAAGGCCGCTGTGTCGCCGCC
GTCCATCGCGTCGAGGTTGGCTTCGTTGCAGAAGCTTACTTCGTCCATTA
cgccgccgtcgacgtcgcagtcggcgtcgcagtcACTGCGTGTTGCTGCC
GATCAGGAAGGGACGCAGCCGTCGCCTTCGTTTCACCCGCTTCATAAACG
GCACGGTCATGGCAGTCATAGTGCTGTCGCTCCTTCTCTGGCCAAAATGG
AAAGCGTTGCTGCCGATAATGATGATTCTTCGCCCAAACCCCAGCCGTCT
TCGTCAGCGCACAAGCCCCAGGCGTCCAAGCCCGAGCATGGCGCAGATCC
TGGGGCGGGCGAGAATTTCTGGAAGTGGTTTCAGGACACCAAGGAAAGTG
AAGGGTCCGCAAATGTAACATGTCCACCGGACAGCGAGCGAGTCTGTCTC
ATGTTTTACAAGTTCCTCAAGAAGTACAAGATTCGCTCCGTGTATGATAT
CTCTTGTGCCCGCAATCTAGACTGGATGCCGCCTATTGTGCGAAAGGTTG
GTAATGAGTTGTGGGGTTTCAAGTATTACTGCAACACCAACACTGAAGAC
CTGTCCCGCGCAAAGGAGAAGCTTGCCGGCCTTTCCTATGTCGAGTTTGC
TCCTGAGCAATGGTGGAGGACAGGTTTTACAGAAGGTATCCAGTTGCTCT
TTGCATGGGATGTGTTACCCCATATAGCCTATGGGCGCATCTGGAACTTC
TTTGTCAAATCAAAGGCCCAAAACATCAAGTACCTTTTGTTTGACAACTA
TCCAGGCATCATGAATGATCCGTCCCCCAAACGACAATATCTGAATATTC
GCAAACACCCATTCCGCTTCCCTGCTGCGAAAGAGGTTGTACAGAATGTC
ACTGAACCTGGTGAAACAGAAAAGCGGCAACTCTTATTCTACGAGACTGA
CATGTTACCAGACAACTTACAATAA
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protein sequence of Ggra3528.t1

>Ggra3528.t1 ID=Ggra3528.t1|Name=Ggra3528.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=425bp
MTAAMYSSRARRRRTTKLRRQRSNAPRAVAAALFFFLLCYEMLVLRPPAA
VKPSLSAHSVASPPPVAAPSSLAASPPAASVSSPSSPSATTLGAGDKTPQ
TTTVNSNIVAKAAVSPPSIASRLASLQKLTSSITPPSTSQSASQSLRVAA
DQEGTQPSPSFHPLHKRHGHGSHSAVAPSLAKMESVAADNDDSSPKPQPS
SSAHKPQASKPEHGADPGAGENFWKWFQDTKESEGSANVTCPPDSERVCL
MFYKFLKKYKIRSVYDISCARNLDWMPPIVRKVGNELWGFKYYCNTNTED
LSRAKEKLAGLSYVEFAPEQWWRTGFTEGIQLLFAWDVLPHIAYGRIWNF
FVKSKAQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNV
TEPGETEKRQLLFYETDMLPDNLQ*
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mRNA from alignment at tig00000059_pilon:761424..762777+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3528.t1 ID=Ggra3528.t1|Name=Ggra3528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1354bp|location=Sequence derived from alignment at tig00000059_pilon:761424..762777+ (Gracilaria gracilis GNS1m male)
ATGACGGCCGCCATGTATTCGTCGCGCGCACGTCGTCGTCGTACCACCAA
GCTGCGTCGTCAGCGCTCCAACGCGCCGCGCGCCGTCGCCGCCGCGCTGT
TTTTCTTCCTGTTGTGCTACGAGATGCTGGTGTTGCGCCCGCCTGCCGCG
GTCAAGCCGTCGCTTTCTGCGCACAGCGTTGCTTCGCCGCCGCCGGTTGC
TGCGCCGTCATCGCTGGCTGCGTCGCCGCCGGCTGCTAGTGTTTCGTCGC
CTTCTTCTCCGTCTGCCACCACGCTTGGCGCGGGCGACAAGACGCCGCAG
ACTACGACTGTGAACAGTAATATTGTGGCCAAGGCCGCTGTGTCGCCGCC
GTCCATCGCGTCGAGGTTGGCTTCGTTGCAGAAGCTTACTTCGTCCATTA
cgccgccgtcgacgtcgcagtcggcgtcgcagtcACTGCGTGTTGCTGCC
GATCAGGAAGGGACGCAGCCGTCGCCTTCGTTTCACCCGCTTCATAAACG
GCACGGTCATGGCAGTCATAGTGCTGTCGCTCCTTCTCTGGCCAAAATGG
AAAGCGTTGCTGCCGATAATGATGATTCTTCGCCCAAACCCCAGCCGTCT
TCGTCAGCGCACAAGCCCCAGGCGTCCAAGCCCGAGCATGGCGCAGATCC
TGGGGCGGGCGAGAATTTCTGGAAGTGGTTTCAGGACACCAAGGAAAGTG
AAGGGTCCGCAAATGTAACATGTCCACCGGACAGCGAGCGAGTCTGTCTC
ATGTTTTACAAGTTCCTCAAGAAGTACAAGATTCGCTCCGTGTATGATAT
CTCTTGTGCCCGCAATCTAGACTGGATGCCGCCTATTGTGCGAAAGGTTG
GTAATGAGTTGTGGGGTTTCAAGTATTACTGCAACACCAACACTGAAGAC
CTGTCCCGCGCAAAGGAGAAGCTTGCCGGCCTTTCCTATGTCGAGTTTGC
TCCTGAGCAATGGTGGAGGACAGGTTTTACAGAAGGTATCCAGTTGCTCT
TTGCATGGGATGTGTTACCCCATATAGCCTATGGGCGCATCTGGAACTTC
TTTGTCAAATCAAAGGCCCAAAACATCAAGTACCTTTTGTTTGACAACTA
TCCAGGCATCATGAATGATCCGGTATGTTAACGATCCCACACCATTCCTC
GTCGCGCCTCAGCCTTTCTGACATATTTGCTGCTCCTCTTGCGCTCTGTA
GTCCCCCAAACGACAATATCTGAATATTCGCAAACACCCATTCCGCTTCC
CTGCTGCGAAAGAGGTTGTACAGAATGTCACTGAACCTGGTGAAACAGAA
AAGCGGCAACTCTTATTCTACGAGACTGACATGTTACCAGACAACTTACA
ATAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:761424..762777+

>Ggra3528.t1 ID=Ggra3528.t1|Name=Ggra3528.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00000059_pilon:761424..762777+ (Gracilaria gracilis GNS1m male)
ATGACGGCCGCCATGTATTCGTCGCGCGCACGTCGTCGTCGTACCACCAA
GCTGCGTCGTCAGCGCTCCAACGCGCCGCGCGCCGTCGCCGCCGCGCTGT
TTTTCTTCCTGTTGTGCTACGAGATGCTGGTGTTGCGCCCGCCTGCCGCG
GTCAAGCCGTCGCTTTCTGCGCACAGCGTTGCTTCGCCGCCGCCGGTTGC
TGCGCCGTCATCGCTGGCTGCGTCGCCGCCGGCTGCTAGTGTTTCGTCGC
CTTCTTCTCCGTCTGCCACCACGCTTGGCGCGGGCGACAAGACGCCGCAG
ACTACGACTGTGAACAGTAATATTGTGGCCAAGGCCGCTGTGTCGCCGCC
GTCCATCGCGTCGAGGTTGGCTTCGTTGCAGAAGCTTACTTCGTCCATTA
cgccgccgtcgacgtcgcagtcggcgtcgcagtcACTGCGTGTTGCTGCC
GATCAGGAAGGGACGCAGCCGTCGCCTTCGTTTCACCCGCTTCATAAACG
GCACGGTCATGGCAGTCATAGTGCTGTCGCTCCTTCTCTGGCCAAAATGG
AAAGCGTTGCTGCCGATAATGATGATTCTTCGCCCAAACCCCAGCCGTCT
TCGTCAGCGCACAAGCCCCAGGCGTCCAAGCCCGAGCATGGCGCAGATCC
TGGGGCGGGCGAGAATTTCTGGAAGTGGTTTCAGGACACCAAGGAAAGTG
AAGGGTCCGCAAATGTAACATGTCCACCGGACAGCGAGCGAGTCTGTCTC
ATGTTTTACAAGTTCCTCAAGAAGTACAAGATTCGCTCCGTGTATGATAT
CTCTTGTGCCCGCAATCTAGACTGGATGCCGCCTATTGTGCGAAAGGTTG
GTAATGAGTTGTGGGGTTTCAAGTATTACTGCAACACCAACACTGAAGAC
CTGTCCCGCGCAAAGGAGAAGCTTGCCGGCCTTTCCTATGTCGAGTTTGC
TCCTGAGCAATGGTGGAGGACAGGTTTTACAGAAGGTATCCAGTTGCTCT
TTGCATGGGATGTGTTACCCCATATAGCCTATGGGCGCATCTGGAACTTC
TTTGTCAAATCAAAGGCCCAAAACATCAAGTACCTTTTGTTTGACAACTA
TCCAGGCATCATGAATGATCCGTCCCCCAAACGACAATATCTGAATATTC
GCAAACACCCATTCCGCTTCCCTGCTGCGAAAGAGGTTGTACAGAATGTC
ACTGAACCTGGTGAAACAGAAAAGCGGCAACTCTTATTCTACGAGACTGA
CATGTTACCAGACAACTTACAATAA
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