Ggra3454.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3454.t1
Unique NameGgra3454.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:163773..164174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME004CT
Preferred nameNFATC2IP
PFAMsRad60-SLD
Max annot lvl2759|Eukaryota
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
GOsGO:0000724,GO:0000725,GO:0001816,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016925,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031386,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0033554,GO:0034399,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue2.93e-31
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota
DescriptionSmall ubiquitinrelated modifier
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3454Ggra3454Gracilaria gracilis GNS1m malegenetig00000059_pilon 163773..164174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3454.t1Ggra3454.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 163773..164174 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3454.t1.start1Ggra3454.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 163773..163775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3454.t1.CDS1Ggra3454.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 163773..163850 +
Ggra3454.t1.CDS2Ggra3454.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 163956..164174 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3454.t1.exon1Ggra3454.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 163773..163850 +
Ggra3454.t1.exon2Ggra3454.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 163956..164174 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3454.t1.intron1Ggra3454.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 163851..163955 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3454.t1.stop1Ggra3454.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 164172..164174 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3454.t1 ID=Ggra3454.t1|Name=Ggra3454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=99bp
MAEKAPEDSKASVDTKPEPGEQINIKVRDAEGNEVQFKIKKTTQLKKLMD
AYCARMGTTKGAYRFLFDGHRINEEDTPETLDMQELDCVDAMVSQLGG*
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spliced messenger RNA

>Ggra3454.t1 ID=Ggra3454.t1|Name=Ggra3454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00000059_pilon:163773..164174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAAAGGCGCCCGAGGACTCCAAAGCCAGTGTGGATACCAAGCC
CGAGCCGGGCGAACAGATCAATATCAAGGTACGAGACGCTGAAGGAAACG
AGGTTCAGTTTAAAATCAAAAAGACCACTCAGCTAAAGAAGCTTATGGAC
GCGTACTGCGCGCGTATGGGAACTACAAAGGGCGCCTATCGCTTCCTGTT
TGACGGCCACCGAATTAACGAGGAGGACACACCGGAGACTCTGGATATGC
AGGAACTCGATTGTGTCGACGCCATGGTTTCGCAACTAGGCGGTTAA
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protein sequence of Ggra3454.t1

>Ggra3454.t1 ID=Ggra3454.t1|Name=Ggra3454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=99bp
MAEKAPEDSKASVDTKPEPGEQINIKVRDAEGNEVQFKIKKTTQLKKLMD
AYCARMGTTKGAYRFLFDGHRINEEDTPETLDMQELDCVDAMVSQLGG*
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mRNA from alignment at tig00000059_pilon:163773..164174+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3454.t1 ID=Ggra3454.t1|Name=Ggra3454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000059_pilon:163773..164174+ (Gracilaria gracilis GNS1m male)
ATGGCCGAAAAGGCGCCCGAGGACTCCAAAGCCAGTGTGGATACCAAGCC
CGAGCCGGGCGAACAGATCAATATCAAGGTATGTAGCCACTTTTCCCTTC
ATTTGTCGTTACTTTCGCGCTTTGTCATCGCCATTTAGCGCTAACTACCC
GTCACTCGCTCTCGCGACGCAACACCCGCGTAGGTACGAGACGCTGAAGG
AAACGAGGTTCAGTTTAAAATCAAAAAGACCACTCAGCTAAAGAAGCTTA
TGGACGCGTACTGCGCGCGTATGGGAACTACAAAGGGCGCCTATCGCTTC
CTGTTTGACGGCCACCGAATTAACGAGGAGGACACACCGGAGACTCTGGA
TATGCAGGAACTCGATTGTGTCGACGCCATGGTTTCGCAACTAGGCGGTT
AA
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Coding sequence (CDS) from alignment at tig00000059_pilon:163773..164174+

>Ggra3454.t1 ID=Ggra3454.t1|Name=Ggra3454.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=297bp|location=Sequence derived from alignment at tig00000059_pilon:163773..164174+ (Gracilaria gracilis GNS1m male)
ATGGCCGAAAAGGCGCCCGAGGACTCCAAAGCCAGTGTGGATACCAAGCC
CGAGCCGGGCGAACAGATCAATATCAAGGTACGAGACGCTGAAGGAAACG
AGGTTCAGTTTAAAATCAAAAAGACCACTCAGCTAAAGAAGCTTATGGAC
GCGTACTGCGCGCGTATGGGAACTACAAAGGGCGCCTATCGCTTCCTGTT
TGACGGCCACCGAATTAACGAGGAGGACACACCGGAGACTCTGGATATGC
AGGAACTCGATTGTGTCGACGCCATGGTTTCGCAACTAGGCGGTTAA
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