Ggra345.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra345.t1
Unique Name	Ggra345.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	780

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000950_pilon	contig	tig00000950_pilon:41694..44033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	479433.Caci_2677
PFAMs	Calx-beta,Flg_new,Laminin_G_3,PA14,PT-HINT,RHS_repeat
Max annot lvl	2\|Bacteria
Evalue	6.43e-12
EggNOG OGs	COG3209@1\|root,COG3209@2\|Bacteria
Description	self proteolysis
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra345	Ggra345	Gracilaria gracilis GNS1m male	gene	tig00000950_pilon 41694..44033 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra345.t1.start1	Ggra345.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000950_pilon 41694..41696 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra345.t1.CDS1	Ggra345.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000950_pilon 41694..44033 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra345.t1.exon1	Ggra345.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000950_pilon 41694..44033 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra345.t1.stop1	Ggra345.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000950_pilon 44031..44033 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra345.t1	Ggra345.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000950_pilon 41694..44033 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000950_pilon:41694..44033+
coding sequence from alignment at tig00000950_pilon:41694..44033+

mRNA sequence

>Ggra345.t1 ID=Ggra345.t1|Name=Ggra345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp
MAPRSNCHRYHEPGEPCSNLDRVKALVNSFPPLHGASITSAYQKVLAQSL
RKKVPNNKVATKPPPHGHHTYVTYGSDHYREAFTYAESISEGVGMLHSLT
PFFLWDSFSVALLHDEISKNVTVSLDTAALTSTVNRFWSEIVLHCAAVYT
AAFKCEYDPTRSAIRRIPESQRGSVAQQLHSCIKSGHFTAKVNIGISAGG
DAAQQATWFLFNLWVSLDVLGYPRVDDAIQQYQSQGLKVPYNVQAGNWNS
GSYHSWFQRSLGNHMYHRFMTRVMRELCYNCDKYNEHIPDGYSLSTCYWG
PLARYTLPSQSCFGESTKVLMADGSAKCIKNVRKNDLVHTTKGKRRVLMV
ESPALGDRQMWNVNGLELSVTAGHCFRTANAGAAKRVAINEIVTMDSAPT
MSIDGGVGKCQQGSQLRSVCVKNGTLTESTLFVTDVRPIMKKTRRSEKQE
DAVRVFDILVEKWWDDDASYFVGGPKNFVAVDAETSNALTDPSTSAAILA
AMDVALKATRASNNPPLKTLSRLGANIDLQDIKRGAMAMVYSKRVQKTYK
RLRIPKATLFESEDGKWSECASFLEYLLISKYGRWIRSVVRTDFESGVEE
ALPDDVLVFAVHDIELSGDHGLPAGSTLRIAMELSNGEEKESRTVCFTND
TSSNQYMLAVHGDCAFESADKFKCSAIYATCSIDISESTLAAFFNCSVIL
KKRPEHFLETFLMCATNGVIGRVSLSYRRMRKGFAKARTADQSTMLLKGV
ALGRQLGHKFAAAIEETSEGFDFGNWLGD*

spliced messenger RNA

>Ggra345.t1 ID=Ggra345.t1|Name=Ggra345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2340bp|location=Sequence derived from alignment at tig00000950_pilon:41694..44033+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCGCTCAAACTGCCACCGCTATCACGAACCGGGTGAGCCATG
TTCTAACCTCGACAGAGTTAAGGCGCTGGTAAACAGCTTTCCTCCTCTCC
ACGGCGCCAGCATTACCTCCGCCTACCAGAAAGTGCTAGCTCAGTCGCTG
AGGAAAAAAGTGCCAAATAACAAGGTCGCAACGAAGCCACCACCCCATGG
TCATCACACCTATGTTACCTACGGTTCCGATCACTATCGAGAAGCATTCA
CGTATGCGGAAAGTATATCAGAAGGCGTCGGTATGTTACACTCTTTGACA
CCGTTTTTTTTGTGGGACTCTTTTTCAGTGGCGCTGCTACATGACGAAAT
CTCCAAGAATGTTACAGTGTCGTTAGACACTGCCGCCCTCACCTCGACTG
TAAATCGGTTTTGGTCAGAGATCGTCCTCCACTGCGCAGCTGTTTACACT
GCTGCCTTCAAATGCGAATACGACCCAACTCGTTCGGCTATTCGTCGCAT
TCCAGAAAGCCAGCGCGGAAGTGTTGCTCAACAACTTCACAGCTGCATCA
AAAGTGGCCATTTCACCGCCAAAGTGAATATTGGTATCTCTGCTGGTGGT
GACGCTGCGCAACAGGCAACATGGTTTCTGTTTAACCTTTGGGTCAGTCT
AGACGTTCTTGGTTATCCACGCGTGGATGACGCTATTCAGCAGTACCAGT
CTCAAGGCCTGAAAGTACCTTACAATGTTCAGGCTGGTAATTGGAATAGC
GGATCTTACCATTCTTGGTTCCAGAGAAGTTTGGGAAATCACATGTACCA
CCGTTTTATGACAAGAGTCATGCGTGAATTGTGCTACAATTGTGACAAAT
ACAACGAACATATACCTGATGGGTATTCACTTAGTACCTGTTATTGGGGA
CCATTGGCAAGATACACTCTCCCAAGTCAAAGTTGTTTCGGTGAGAGTAC
CAAAGTTCTAATGGCGGACGGATCTGCAAAATGCATCAAGAACGTTCGGA
AAAATGATTTGGTTCACACCACGAAAGGAAAACGTAGGGTCCTAATGGTG
GAAAGTCCCGCTCTGGGAGATCGCCAGATGTGGAATGTCAATGGTTTAGA
ATTGTCGGTCACGGCCGGACACTGCTTCCGCACAGCAAACGCTGGCGCAG
CAAAGCGAGTCGCTATCAATGAGATTGTGACAATGGACTCTGCTCCTACA
ATGAGCATCGACGGCGGAGTTGGAAAGTGTCAACAAGGTTCTCAACTTCG
CTCGGTCTGTGTTAAGAACGGTACGCTGACAGAATCAACTCTCTTTGTAA
CAGATGTTAGGCCGATTATGAAAAAGACGCGACGTTCAGAGAAGCAAGAA
GACGCAGTAAGGGTGTTCGATATCCTTGTCGAAAAGTGGTGGGACGATGA
TGCTTCATATTTTGTCGGAGGCCCAAAAAACTTCGTGGCTGTTGATGCCG
AAACCTCGAATGCATTAACTGACCCCTCTACCTCGGCTGCCATCCTGGCG
GCAATGGACGTAGCTCTTAAGGCTACAAGAGCATCAAACAATCCTCCGCT
TAAGACGCTGTCAAGACTAGGTGCAAATATTGACTTGCAAGATATTAAAC
GTGGGGCAATGGCAATGGTTTATTCAAAGAGAGTTCAAAAAACTTACAAA
AGGTTACGTATTCCAAAAGCTACTTTATTCGAGAGTGAAGATGGAAAATG
GTCAGAATGCGCTTCATTCTTAGAATATTTGTTGATTTCTAAGTACGGGC
GTTGGATTCGATCGGTAGTACGGACCGATTTCGAATCTGGTGTAGAGGAA
GCGCTTCCGGACGACGTACTGGTGTTTGCTGTTCACGACATTGAACTCTC
CGGAGACCATGGATTACCGGCAGGCAGCACACTGCGTATTGCAATGGAAC
TCTCAAATGGGGAAGAAAAAGAGAGCAGGACTGTCTGTTTCACCAACGAC
ACCAGCTCAAATCAATACATGCTTGCCGTGCACGGAGATTGTGCATTCGA
ATCTGCGGACAAGTTCAAGTGCTCTGCGATATATGCCACGTGCTCGATTG
ACATATCCGAAAGCACTTTGGCTGCTTTCTTCAACTGCAGTGTGATACTG
AAGAAGCGTCCCGAACATTTCTTGGAAACTTTCCTCATGTGTGCTACTAA
TGGCGTGATCGGAAGGGTGAGTTTGAGCTATCGCAGAATGCGTAAAGGGT
TCGCAAAGGCGAGGACGGCTGATCAATCGACTATGCTTCTGAAGGGCGTG
GCGCTTGGACGCCAGCTTGGACATAAATTTGCGGCCGCTATTGAAGAAAC
GTCGGAGGGTTTTGATTTCGGTAATTGGCTTGGAGACTGA

protein sequence of Ggra345.t1

>Ggra345.t1 ID=Ggra345.t1|Name=Ggra345.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=780bp
MAPRSNCHRYHEPGEPCSNLDRVKALVNSFPPLHGASITSAYQKVLAQSL
RKKVPNNKVATKPPPHGHHTYVTYGSDHYREAFTYAESISEGVGMLHSLT
PFFLWDSFSVALLHDEISKNVTVSLDTAALTSTVNRFWSEIVLHCAAVYT
AAFKCEYDPTRSAIRRIPESQRGSVAQQLHSCIKSGHFTAKVNIGISAGG
DAAQQATWFLFNLWVSLDVLGYPRVDDAIQQYQSQGLKVPYNVQAGNWNS
GSYHSWFQRSLGNHMYHRFMTRVMRELCYNCDKYNEHIPDGYSLSTCYWG
PLARYTLPSQSCFGESTKVLMADGSAKCIKNVRKNDLVHTTKGKRRVLMV
ESPALGDRQMWNVNGLELSVTAGHCFRTANAGAAKRVAINEIVTMDSAPT
MSIDGGVGKCQQGSQLRSVCVKNGTLTESTLFVTDVRPIMKKTRRSEKQE
DAVRVFDILVEKWWDDDASYFVGGPKNFVAVDAETSNALTDPSTSAAILA
AMDVALKATRASNNPPLKTLSRLGANIDLQDIKRGAMAMVYSKRVQKTYK
RLRIPKATLFESEDGKWSECASFLEYLLISKYGRWIRSVVRTDFESGVEE
ALPDDVLVFAVHDIELSGDHGLPAGSTLRIAMELSNGEEKESRTVCFTND
TSSNQYMLAVHGDCAFESADKFKCSAIYATCSIDISESTLAAFFNCSVIL
KKRPEHFLETFLMCATNGVIGRVSLSYRRMRKGFAKARTADQSTMLLKGV
ALGRQLGHKFAAAIEETSEGFDFGNWLGD*

mRNA from alignment at tig00000950_pilon:41694..44033+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra345.t1 ID=Ggra345.t1|Name=Ggra345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2340bp|location=Sequence derived from alignment at tig00000950_pilon:41694..44033+ (Gracilaria gracilis GNS1m male)
ATGGCGCCTCGCTCAAACTGCCACCGCTATCACGAACCGGGTGAGCCATG
TTCTAACCTCGACAGAGTTAAGGCGCTGGTAAACAGCTTTCCTCCTCTCC
ACGGCGCCAGCATTACCTCCGCCTACCAGAAAGTGCTAGCTCAGTCGCTG
AGGAAAAAAGTGCCAAATAACAAGGTCGCAACGAAGCCACCACCCCATGG
TCATCACACCTATGTTACCTACGGTTCCGATCACTATCGAGAAGCATTCA
CGTATGCGGAAAGTATATCAGAAGGCGTCGGTATGTTACACTCTTTGACA
CCGTTTTTTTTGTGGGACTCTTTTTCAGTGGCGCTGCTACATGACGAAAT
CTCCAAGAATGTTACAGTGTCGTTAGACACTGCCGCCCTCACCTCGACTG
TAAATCGGTTTTGGTCAGAGATCGTCCTCCACTGCGCAGCTGTTTACACT
GCTGCCTTCAAATGCGAATACGACCCAACTCGTTCGGCTATTCGTCGCAT
TCCAGAAAGCCAGCGCGGAAGTGTTGCTCAACAACTTCACAGCTGCATCA
AAAGTGGCCATTTCACCGCCAAAGTGAATATTGGTATCTCTGCTGGTGGT
GACGCTGCGCAACAGGCAACATGGTTTCTGTTTAACCTTTGGGTCAGTCT
AGACGTTCTTGGTTATCCACGCGTGGATGACGCTATTCAGCAGTACCAGT
CTCAAGGCCTGAAAGTACCTTACAATGTTCAGGCTGGTAATTGGAATAGC
GGATCTTACCATTCTTGGTTCCAGAGAAGTTTGGGAAATCACATGTACCA
CCGTTTTATGACAAGAGTCATGCGTGAATTGTGCTACAATTGTGACAAAT
ACAACGAACATATACCTGATGGGTATTCACTTAGTACCTGTTATTGGGGA
CCATTGGCAAGATACACTCTCCCAAGTCAAAGTTGTTTCGGTGAGAGTAC
CAAAGTTCTAATGGCGGACGGATCTGCAAAATGCATCAAGAACGTTCGGA
AAAATGATTTGGTTCACACCACGAAAGGAAAACGTAGGGTCCTAATGGTG
GAAAGTCCCGCTCTGGGAGATCGCCAGATGTGGAATGTCAATGGTTTAGA
ATTGTCGGTCACGGCCGGACACTGCTTCCGCACAGCAAACGCTGGCGCAG
CAAAGCGAGTCGCTATCAATGAGATTGTGACAATGGACTCTGCTCCTACA
ATGAGCATCGACGGCGGAGTTGGAAAGTGTCAACAAGGTTCTCAACTTCG
CTCGGTCTGTGTTAAGAACGGTACGCTGACAGAATCAACTCTCTTTGTAA
CAGATGTTAGGCCGATTATGAAAAAGACGCGACGTTCAGAGAAGCAAGAA
GACGCAGTAAGGGTGTTCGATATCCTTGTCGAAAAGTGGTGGGACGATGA
TGCTTCATATTTTGTCGGAGGCCCAAAAAACTTCGTGGCTGTTGATGCCG
AAACCTCGAATGCATTAACTGACCCCTCTACCTCGGCTGCCATCCTGGCG
GCAATGGACGTAGCTCTTAAGGCTACAAGAGCATCAAACAATCCTCCGCT
TAAGACGCTGTCAAGACTAGGTGCAAATATTGACTTGCAAGATATTAAAC
GTGGGGCAATGGCAATGGTTTATTCAAAGAGAGTTCAAAAAACTTACAAA
AGGTTACGTATTCCAAAAGCTACTTTATTCGAGAGTGAAGATGGAAAATG
GTCAGAATGCGCTTCATTCTTAGAATATTTGTTGATTTCTAAGTACGGGC
GTTGGATTCGATCGGTAGTACGGACCGATTTCGAATCTGGTGTAGAGGAA
GCGCTTCCGGACGACGTACTGGTGTTTGCTGTTCACGACATTGAACTCTC
CGGAGACCATGGATTACCGGCAGGCAGCACACTGCGTATTGCAATGGAAC
TCTCAAATGGGGAAGAAAAAGAGAGCAGGACTGTCTGTTTCACCAACGAC
ACCAGCTCAAATCAATACATGCTTGCCGTGCACGGAGATTGTGCATTCGA
ATCTGCGGACAAGTTCAAGTGCTCTGCGATATATGCCACGTGCTCGATTG
ACATATCCGAAAGCACTTTGGCTGCTTTCTTCAACTGCAGTGTGATACTG
AAGAAGCGTCCCGAACATTTCTTGGAAACTTTCCTCATGTGTGCTACTAA
TGGCGTGATCGGAAGGGTGAGTTTGAGCTATCGCAGAATGCGTAAAGGGT
TCGCAAAGGCGAGGACGGCTGATCAATCGACTATGCTTCTGAAGGGCGTG
GCGCTTGGACGCCAGCTTGGACATAAATTTGCGGCCGCTATTGAAGAAAC
GTCGGAGGGTTTTGATTTCGGTAATTGGCTTGGAGACTGA

Coding sequence (CDS) from alignment at tig00000950_pilon:41694..44033+

>Ggra345.t1 ID=Ggra345.t1|Name=Ggra345.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2340bp|location=Sequence derived from alignment at tig00000950_pilon:41694..44033+ (Gracilaria gracilis GNS1m male)
ATGGCGCCTCGCTCAAACTGCCACCGCTATCACGAACCGGGTGAGCCATG
TTCTAACCTCGACAGAGTTAAGGCGCTGGTAAACAGCTTTCCTCCTCTCC
ACGGCGCCAGCATTACCTCCGCCTACCAGAAAGTGCTAGCTCAGTCGCTG
AGGAAAAAAGTGCCAAATAACAAGGTCGCAACGAAGCCACCACCCCATGG
TCATCACACCTATGTTACCTACGGTTCCGATCACTATCGAGAAGCATTCA
CGTATGCGGAAAGTATATCAGAAGGCGTCGGTATGTTACACTCTTTGACA
CCGTTTTTTTTGTGGGACTCTTTTTCAGTGGCGCTGCTACATGACGAAAT
CTCCAAGAATGTTACAGTGTCGTTAGACACTGCCGCCCTCACCTCGACTG
TAAATCGGTTTTGGTCAGAGATCGTCCTCCACTGCGCAGCTGTTTACACT
GCTGCCTTCAAATGCGAATACGACCCAACTCGTTCGGCTATTCGTCGCAT
TCCAGAAAGCCAGCGCGGAAGTGTTGCTCAACAACTTCACAGCTGCATCA
AAAGTGGCCATTTCACCGCCAAAGTGAATATTGGTATCTCTGCTGGTGGT
GACGCTGCGCAACAGGCAACATGGTTTCTGTTTAACCTTTGGGTCAGTCT
AGACGTTCTTGGTTATCCACGCGTGGATGACGCTATTCAGCAGTACCAGT
CTCAAGGCCTGAAAGTACCTTACAATGTTCAGGCTGGTAATTGGAATAGC
GGATCTTACCATTCTTGGTTCCAGAGAAGTTTGGGAAATCACATGTACCA
CCGTTTTATGACAAGAGTCATGCGTGAATTGTGCTACAATTGTGACAAAT
ACAACGAACATATACCTGATGGGTATTCACTTAGTACCTGTTATTGGGGA
CCATTGGCAAGATACACTCTCCCAAGTCAAAGTTGTTTCGGTGAGAGTAC
CAAAGTTCTAATGGCGGACGGATCTGCAAAATGCATCAAGAACGTTCGGA
AAAATGATTTGGTTCACACCACGAAAGGAAAACGTAGGGTCCTAATGGTG
GAAAGTCCCGCTCTGGGAGATCGCCAGATGTGGAATGTCAATGGTTTAGA
ATTGTCGGTCACGGCCGGACACTGCTTCCGCACAGCAAACGCTGGCGCAG
CAAAGCGAGTCGCTATCAATGAGATTGTGACAATGGACTCTGCTCCTACA
ATGAGCATCGACGGCGGAGTTGGAAAGTGTCAACAAGGTTCTCAACTTCG
CTCGGTCTGTGTTAAGAACGGTACGCTGACAGAATCAACTCTCTTTGTAA
CAGATGTTAGGCCGATTATGAAAAAGACGCGACGTTCAGAGAAGCAAGAA
GACGCAGTAAGGGTGTTCGATATCCTTGTCGAAAAGTGGTGGGACGATGA
TGCTTCATATTTTGTCGGAGGCCCAAAAAACTTCGTGGCTGTTGATGCCG
AAACCTCGAATGCATTAACTGACCCCTCTACCTCGGCTGCCATCCTGGCG
GCAATGGACGTAGCTCTTAAGGCTACAAGAGCATCAAACAATCCTCCGCT
TAAGACGCTGTCAAGACTAGGTGCAAATATTGACTTGCAAGATATTAAAC
GTGGGGCAATGGCAATGGTTTATTCAAAGAGAGTTCAAAAAACTTACAAA
AGGTTACGTATTCCAAAAGCTACTTTATTCGAGAGTGAAGATGGAAAATG
GTCAGAATGCGCTTCATTCTTAGAATATTTGTTGATTTCTAAGTACGGGC
GTTGGATTCGATCGGTAGTACGGACCGATTTCGAATCTGGTGTAGAGGAA
GCGCTTCCGGACGACGTACTGGTGTTTGCTGTTCACGACATTGAACTCTC
CGGAGACCATGGATTACCGGCAGGCAGCACACTGCGTATTGCAATGGAAC
TCTCAAATGGGGAAGAAAAAGAGAGCAGGACTGTCTGTTTCACCAACGAC
ACCAGCTCAAATCAATACATGCTTGCCGTGCACGGAGATTGTGCATTCGA
ATCTGCGGACAAGTTCAAGTGCTCTGCGATATATGCCACGTGCTCGATTG
ACATATCCGAAAGCACTTTGGCTGCTTTCTTCAACTGCAGTGTGATACTG
AAGAAGCGTCCCGAACATTTCTTGGAAACTTTCCTCATGTGTGCTACTAA
TGGCGTGATCGGAAGGGTGAGTTTGAGCTATCGCAGAATGCGTAAAGGGT
TCGCAAAGGCGAGGACGGCTGATCAATCGACTATGCTTCTGAAGGGCGTG
GCGCTTGGACGCCAGCTTGGACATAAATTTGCGGCCGCTATTGAAGAAAC
GTCGGAGGGTTTTGATTTCGGTAATTGGCTTGGAGACTGA