Ggra3416.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3416.t1
Unique NameGgra3416.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:267316..268414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ca01032.1.p
PFAMsDUF1664
Max annot lvl35493|Streptophyta
Evalue8.64e-12
EggNOG OGs28J9H@1|root,2QRN8@2759|Eukaryota,37SJR@33090|Viridiplantae,3G7GZ@35493|Streptophyta,3KWHB@4447|Liliopsida,3IAVQ@38820|Poales
DescriptionProtein of unknown function (DUF1664)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3416Ggra3416Gracilaria gracilis GNS1m malegenetig00000905_pilon 267316..268414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3416.t1Ggra3416.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 267316..268414 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3416.t1.start1Ggra3416.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 267316..267318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3416.t1.CDS1Ggra3416.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 267316..268268 +
Ggra3416.t1.CDS2Ggra3416.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000905_pilon 268342..268414 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3416.t1.exon1Ggra3416.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 267316..268268 +
Ggra3416.t1.exon2Ggra3416.t1.exon2Gracilaria gracilis GNS1m maleexontig00000905_pilon 268342..268414 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3416.t1.intron1Ggra3416.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000905_pilon 268269..268341 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3416.t1.stop1Ggra3416.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 268412..268414 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3416.t1 ID=Ggra3416.t1|Name=Ggra3416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MAALGVRSIALLFGAGFSGSYVYTHLDKARSIVARILREVEEGSNAGTQS
HSKGSVGDASTSVDSSPQLEELSRQLSSLSREVSRSRSDQWLIMPPSYKG
SIATITDIFNLIGWGVAAISIGGIVYYVAYRKKFKLTDLAWVSQSTFTGT
VEAMQKGITRVSGAVGAVKREITQRLREVEVHVNRVQVVLGDQIDRDVGA
VKEGVAEVGDEVAGVKCALGDVNQRIDQLDNKIDFATNGIVALVKALSSV
APDRIKPGSPFYDLKRFAEISDSNTANSGVLRHRLSAGGLRGLLTGEDGG
DKEIAGKRRSMDLKNSISPLLMFGPEVFFVKVAQCSRSRYY*
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spliced messenger RNA

>Ggra3416.t1 ID=Ggra3416.t1|Name=Ggra3416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000905_pilon:267316..268414+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGCTCGGTGTCCGTTCAATCGCGCTCTTGTTCGGAGCAGGATT
CTCGGGCTCCTATGTTTACACCCATCTGGACAAAGCACGTTCCATAGTAG
CAAGAATTCTGCGTGAAGTAGAAGAGGGCTCAAACGCAGGAACGCAGTCT
CACTCAAAAGGGTCCGTCGGTGACGCGAGTACGAGCGTGGATTCATCTCC
GCAGTTGGAGGAGTTGTCGCGCCAACTCTCTTCTCTGTCGCGTGAGGTCA
GCCGCTCGCGCAGTGATCAGTGGTTGATAATGCCACCGTCGTACAAAGGG
TCCATCGCCACCATCACGGACATCTTTAATCTGATCGGGTGGGGAGTGGC
GGCTATCTCAATTGGTGGGATTGTATACTATGTGGCATATCGAAAGAAGT
TCAAGCTCACAGACTTAGCGTGGGTCAGTCAAAGCACGTTCACTGGTACT
GTGGAAGCGATGCAGAAAGGTATAACGAGAGTGAGTGGCGCCGTGGGGGC
TGTTAAAAGAGAAATAACACAGCGATTACGTGAGGTTGAAGTGCATGTCA
ATCGAGTTCAAGTGGTGCTGGGTGACCAAATAGACCGGGATGTTGGAGCA
GTCAAGGAGGGTGTGGCTGAGGTGGGCGACGAAGTGGCTGGTGTGAAGTG
CGCCTTGGGTGATGTAAACCAGAGAATTGACCAGTTGGACAACAAGATCG
ACTTCGCTACGAACGGCATTGTGGCTCTCGTCAAGGCTTTGTCCAGTGTT
GCGCCAGATCGTATCAAACCTGGGTCGCCGTTCTACGACTTGAAGCGGTT
CGCGGAAATTTCGGACAGTAACACTGCAAATTCGGGAGTCCTGAGACACC
GATTGTCTGCGGGGGGGCTAAGGGGACTGTTAACAGGAGAAGACGGTGGG
GACAAGGAGATTGCTGGGAAGAGACGATCGATGGATTTGAAGAATTCAAT
CTCTCCACTATTAATGTTCGGTCCCGAAGTGTTCTTTGTGAAAGTAGCAC
AGTGTAGTAGGTCACGGTACTACTAA
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protein sequence of Ggra3416.t1

>Ggra3416.t1 ID=Ggra3416.t1|Name=Ggra3416.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MAALGVRSIALLFGAGFSGSYVYTHLDKARSIVARILREVEEGSNAGTQS
HSKGSVGDASTSVDSSPQLEELSRQLSSLSREVSRSRSDQWLIMPPSYKG
SIATITDIFNLIGWGVAAISIGGIVYYVAYRKKFKLTDLAWVSQSTFTGT
VEAMQKGITRVSGAVGAVKREITQRLREVEVHVNRVQVVLGDQIDRDVGA
VKEGVAEVGDEVAGVKCALGDVNQRIDQLDNKIDFATNGIVALVKALSSV
APDRIKPGSPFYDLKRFAEISDSNTANSGVLRHRLSAGGLRGLLTGEDGG
DKEIAGKRRSMDLKNSISPLLMFGPEVFFVKVAQCSRSRYY*
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mRNA from alignment at tig00000905_pilon:267316..268414+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3416.t1 ID=Ggra3416.t1|Name=Ggra3416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1099bp|location=Sequence derived from alignment at tig00000905_pilon:267316..268414+ (Gracilaria gracilis GNS1m male)
ATGGCTGCGCTCGGTGTCCGTTCAATCGCGCTCTTGTTCGGAGCAGGATT
CTCGGGCTCCTATGTTTACACCCATCTGGACAAAGCACGTTCCATAGTAG
CAAGAATTCTGCGTGAAGTAGAAGAGGGCTCAAACGCAGGAACGCAGTCT
CACTCAAAAGGGTCCGTCGGTGACGCGAGTACGAGCGTGGATTCATCTCC
GCAGTTGGAGGAGTTGTCGCGCCAACTCTCTTCTCTGTCGCGTGAGGTCA
GCCGCTCGCGCAGTGATCAGTGGTTGATAATGCCACCGTCGTACAAAGGG
TCCATCGCCACCATCACGGACATCTTTAATCTGATCGGGTGGGGAGTGGC
GGCTATCTCAATTGGTGGGATTGTATACTATGTGGCATATCGAAAGAAGT
TCAAGCTCACAGACTTAGCGTGGGTCAGTCAAAGCACGTTCACTGGTACT
GTGGAAGCGATGCAGAAAGGTATAACGAGAGTGAGTGGCGCCGTGGGGGC
TGTTAAAAGAGAAATAACACAGCGATTACGTGAGGTTGAAGTGCATGTCA
ATCGAGTTCAAGTGGTGCTGGGTGACCAAATAGACCGGGATGTTGGAGCA
GTCAAGGAGGGTGTGGCTGAGGTGGGCGACGAAGTGGCTGGTGTGAAGTG
CGCCTTGGGTGATGTAAACCAGAGAATTGACCAGTTGGACAACAAGATCG
ACTTCGCTACGAACGGCATTGTGGCTCTCGTCAAGGCTTTGTCCAGTGTT
GCGCCAGATCGTATCAAACCTGGGTCGCCGTTCTACGACTTGAAGCGGTT
CGCGGAAATTTCGGACAGTAACACTGCAAATTCGGGAGTCCTGAGACACC
GATTGTCTGCGGGGGGGCTAAGGGGACTGTTAACAGGAGAAGACGGTGGG
GACAAGGAGATTGCTGGGAAGAGACGATCGATGGATTTGAAGAATTCAAT
CTCGTAAGCTTCATCTGCTTGTTATGTTAATCTTCCGCGACGCTTATTGA
CGATTTGTATGCTACGACGATACCAGTCCACTATTAATGTTCGGTCCCGA
AGTGTTCTTTGTGAAAGTAGCACAGTGTAGTAGGTCACGGTACTACTAA
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Coding sequence (CDS) from alignment at tig00000905_pilon:267316..268414+

>Ggra3416.t1 ID=Ggra3416.t1|Name=Ggra3416.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000905_pilon:267316..268414+ (Gracilaria gracilis GNS1m male)
ATGGCTGCGCTCGGTGTCCGTTCAATCGCGCTCTTGTTCGGAGCAGGATT
CTCGGGCTCCTATGTTTACACCCATCTGGACAAAGCACGTTCCATAGTAG
CAAGAATTCTGCGTGAAGTAGAAGAGGGCTCAAACGCAGGAACGCAGTCT
CACTCAAAAGGGTCCGTCGGTGACGCGAGTACGAGCGTGGATTCATCTCC
GCAGTTGGAGGAGTTGTCGCGCCAACTCTCTTCTCTGTCGCGTGAGGTCA
GCCGCTCGCGCAGTGATCAGTGGTTGATAATGCCACCGTCGTACAAAGGG
TCCATCGCCACCATCACGGACATCTTTAATCTGATCGGGTGGGGAGTGGC
GGCTATCTCAATTGGTGGGATTGTATACTATGTGGCATATCGAAAGAAGT
TCAAGCTCACAGACTTAGCGTGGGTCAGTCAAAGCACGTTCACTGGTACT
GTGGAAGCGATGCAGAAAGGTATAACGAGAGTGAGTGGCGCCGTGGGGGC
TGTTAAAAGAGAAATAACACAGCGATTACGTGAGGTTGAAGTGCATGTCA
ATCGAGTTCAAGTGGTGCTGGGTGACCAAATAGACCGGGATGTTGGAGCA
GTCAAGGAGGGTGTGGCTGAGGTGGGCGACGAAGTGGCTGGTGTGAAGTG
CGCCTTGGGTGATGTAAACCAGAGAATTGACCAGTTGGACAACAAGATCG
ACTTCGCTACGAACGGCATTGTGGCTCTCGTCAAGGCTTTGTCCAGTGTT
GCGCCAGATCGTATCAAACCTGGGTCGCCGTTCTACGACTTGAAGCGGTT
CGCGGAAATTTCGGACAGTAACACTGCAAATTCGGGAGTCCTGAGACACC
GATTGTCTGCGGGGGGGCTAAGGGGACTGTTAACAGGAGAAGACGGTGGG
GACAAGGAGATTGCTGGGAAGAGACGATCGATGGATTTGAAGAATTCAAT
CTCTCCACTATTAATGTTCGGTCCCGAAGTGTTCTTTGTGAAAGTAGCAC
AGTGTAGTAGGTCACGGTACTACTAA
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