Ggra3408.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3408.t1
Unique NameGgra3408.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:246314..247771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX87328
Preferred nameALG10
PFAMsDIE2_ALG10
Max annot lvl33208|Metazoa
KEGG koko:K03850
KEGG ReactionR06264
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
GOsGO:0002064,GO:0002065,GO:0002066,GO:0003008,GO:0003674,GO:0003824,GO:0004583,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0007275,GO:0007399,GO:0007423,GO:0007600,GO:0007605,GO:0008150,GO:0008152,GO:0008544,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0010959,GO:0012505,GO:0015459,GO:0016020,GO:0016247,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0019538,GO:0022008,GO:0022898,GO:0030154,GO:0030182,GO:0030855,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031984,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032879,GO:0034645,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035315,GO:0036211,GO:0042175,GO:0042490,GO:0042491,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043412,GO:0043413,GO:0043583,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046527,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050954,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060049,GO:0060050,GO:0060113,GO:0060117,GO:0060119,GO:0060255,GO:0060429,GO:0060563,GO:0065007,GO:0065009,GO:0070085,GO:0071704,GO:0080090,GO:0098772,GO:0098827,GO:0099106,GO:1901016,GO:1901018,GO:1901135,GO:1901137,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1901979,GO:1901980,GO:1903018,GO:1903020,GO:1903818,GO:1904062,GO:1904064,GO:2000112,GO:2001257,GO:2001259
Evalue2.11e-36
EggNOG OGsKOG2642@1|root,KOG2642@2759|Eukaryota,39INY@33154|Opisthokonta,3BDZV@33208|Metazoa,3CY07@33213|Bilateria,41X9R@6656|Arthropoda
EC2.4.1.256
DescriptionTransferase activity, transferring hexosyl groups
COG categoryIKOT
CAZyGT59
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3408Ggra3408Gracilaria gracilis GNS1m malegenetig00000905_pilon 246314..247771 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3408.t1.start1Ggra3408.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 246314..246316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3408.t1.CDS1Ggra3408.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 246314..247771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3408.t1.exon1Ggra3408.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 246314..247771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3408.t1.stop1Ggra3408.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 247769..247771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3408.t1Ggra3408.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 246314..247771 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3408.t1 ID=Ggra3408.t1|Name=Ggra3408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp
MFTAPKIFLAAALLLLCLHTWINFRQPEPYMDELFHVPQAQEFCEAFMAR
LLPSYDPSITTPPVLYIPNAILASVMRNTVVCGTRWLRVTSAVMSFLSLA
LMGDILRIITERRRVHNERIAAVCVRGDREVIWLLAFIIWLHPVNLFYAN
LFYTDTTSLFWVLVLWRMNLGNNSFLSAPFGVLGSLSRQTNMVWHAYIVF
DTTFSSNILMSSFRFSTIVLKLIKDNPFHVFAGIGYGLFVLVNKGIALGD
RSHHEMTTHYAMFAYFAAFHGTFFGLIQLSAPWEALNMVYRVFSSLKLVT
LILTICVAMTGAVLATGDKVHPFILADNRHFTFYIYRRWLLRSLGRRLAL
VPVYAWGIAGPFCEREITRGTRRQEMESSLTEEYQNQCIQRADFVSDIAL
LLCVYITLVPAALFEPRYFVVGSTLFCLRRCARLRSPPNTRLLWFLSATM
VLLNIAFVFVFAELPFPRPVDEHMPKDTSPGRFMF*
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spliced messenger RNA

>Ggra3408.t1 ID=Ggra3408.t1|Name=Ggra3408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000905_pilon:246314..247771+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACAGCTCCGAAAATCTTTCTCGCGGCAGCTTTACTTTTGCTATG
CTTGCATACATGGATCAATTTTCGCCAACCTGAACCGTACATGGATGAAC
TGTTCCATGTTCCTCAGGCTCAAGAATTCTGTGAAGCTTTCATGGCCAGG
CTCCTTCCATCCTATGATCCTTCTATAACAACACCGCCTGTCCTGTATAT
TCCCAATGCTATTCTTGCAAGTGTGATGAGGAACACCGTTGTCTGCGGAA
CTAGGTGGCTTCGAGTTACTTCTGCTGTCATGTCCTTCCTCTCGCTTGCG
CTTATGGGTGATATTCTGCGGATCATTACTGAGCGGCGACGTGTTCATAA
TGAACGAATTGCTGCGGTATGTGTTCGAGGGGACCGTGAAGTAATCTGGT
TGCTTGCGTTTATCATTTGGCTTCATCCTGTCAATCTGTTCTATGCGAAC
TTATTCTATACAGACACCACATCGCTGTTTTGGGTGCTGGTCTTATGGAG
GATGAACCTCGGTAACAATTCCTTTTTGTCTGCACCTTTCGGAGTACTGG
GAAGCCTATCGAGACAAACCAACATGGTATGGCACGCATATATTGTCTTC
GACACCACATTTAGCTCGAATATCCTCATGAGTAGCTTTCGATTCTCTAC
AATTGTACTGAAGTTAATCAAGGACAATCCTTTTCACGTATTCGCTGGGA
TAGGATATGGGCTGTTCGTGCTTGTAAACAAAGGAATTGCACTCGGAGAC
AGATCACATCATGAGATGACTACCCATTACGCTATGTTTGCTTATTTCGC
AGCTTTCCATGGCACTTTCTTTGGTTTGATCCAACTCTCGGCCCCTTGGG
AAGCATTGAACATGGTGTACAGGGTTTTCTCATCTCTTAAATTAGTGACG
TTGATTCTCACTATTTGTGTTGCTATGACCGGTGCCGTACTTGCCACCGG
AGACAAAGTGCACCCTTTCATTCTCGCTGACAATCGCCATTTCACTTTCT
ATATCTACCGTCGTTGGTTGTTACGATCTCTAGGGCGAAGGCTTGCCCTT
GTCCCGGTATATGCTTGGGGGATTGCGGGTCCATTCTGTGAACGAGAGAT
AACACGCGGTACGAGACGACAGGAAATGGAATCAAGTCTGACCGAAGAAT
ACCAGAATCAGTGTATACAAAGAGCTGACTTTGTATCTGATATCGCTTTG
TTGCTTTGTGTATACATCACTCTAGTACCAGCTGCTCTCTTTGAACCAAG
ATACTTCGTTGTTGGAAGCACTTTGTTTTGCTTAAGGCGTTGTGCAAGAT
TGAGATCGCCACCGAACACACGCCTTTTGTGGTTTCTTTCGGCTACCATG
GTACTTCTGAACATAGCATTTGTCTTTGTTTTTGCTGAACTCCCGTTTCC
GAGACCTGTGGATGAACATATGCCGAAGGACACGTCCCCCGGGCGCTTCA
TGTTCTAA
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protein sequence of Ggra3408.t1

>Ggra3408.t1 ID=Ggra3408.t1|Name=Ggra3408.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=486bp
MFTAPKIFLAAALLLLCLHTWINFRQPEPYMDELFHVPQAQEFCEAFMAR
LLPSYDPSITTPPVLYIPNAILASVMRNTVVCGTRWLRVTSAVMSFLSLA
LMGDILRIITERRRVHNERIAAVCVRGDREVIWLLAFIIWLHPVNLFYAN
LFYTDTTSLFWVLVLWRMNLGNNSFLSAPFGVLGSLSRQTNMVWHAYIVF
DTTFSSNILMSSFRFSTIVLKLIKDNPFHVFAGIGYGLFVLVNKGIALGD
RSHHEMTTHYAMFAYFAAFHGTFFGLIQLSAPWEALNMVYRVFSSLKLVT
LILTICVAMTGAVLATGDKVHPFILADNRHFTFYIYRRWLLRSLGRRLAL
VPVYAWGIAGPFCEREITRGTRRQEMESSLTEEYQNQCIQRADFVSDIAL
LLCVYITLVPAALFEPRYFVVGSTLFCLRRCARLRSPPNTRLLWFLSATM
VLLNIAFVFVFAELPFPRPVDEHMPKDTSPGRFMF*
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mRNA from alignment at tig00000905_pilon:246314..247771+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3408.t1 ID=Ggra3408.t1|Name=Ggra3408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000905_pilon:246314..247771+ (Gracilaria gracilis GNS1m male)
ATGTTCACAGCTCCGAAAATCTTTCTCGCGGCAGCTTTACTTTTGCTATG
CTTGCATACATGGATCAATTTTCGCCAACCTGAACCGTACATGGATGAAC
TGTTCCATGTTCCTCAGGCTCAAGAATTCTGTGAAGCTTTCATGGCCAGG
CTCCTTCCATCCTATGATCCTTCTATAACAACACCGCCTGTCCTGTATAT
TCCCAATGCTATTCTTGCAAGTGTGATGAGGAACACCGTTGTCTGCGGAA
CTAGGTGGCTTCGAGTTACTTCTGCTGTCATGTCCTTCCTCTCGCTTGCG
CTTATGGGTGATATTCTGCGGATCATTACTGAGCGGCGACGTGTTCATAA
TGAACGAATTGCTGCGGTATGTGTTCGAGGGGACCGTGAAGTAATCTGGT
TGCTTGCGTTTATCATTTGGCTTCATCCTGTCAATCTGTTCTATGCGAAC
TTATTCTATACAGACACCACATCGCTGTTTTGGGTGCTGGTCTTATGGAG
GATGAACCTCGGTAACAATTCCTTTTTGTCTGCACCTTTCGGAGTACTGG
GAAGCCTATCGAGACAAACCAACATGGTATGGCACGCATATATTGTCTTC
GACACCACATTTAGCTCGAATATCCTCATGAGTAGCTTTCGATTCTCTAC
AATTGTACTGAAGTTAATCAAGGACAATCCTTTTCACGTATTCGCTGGGA
TAGGATATGGGCTGTTCGTGCTTGTAAACAAAGGAATTGCACTCGGAGAC
AGATCACATCATGAGATGACTACCCATTACGCTATGTTTGCTTATTTCGC
AGCTTTCCATGGCACTTTCTTTGGTTTGATCCAACTCTCGGCCCCTTGGG
AAGCATTGAACATGGTGTACAGGGTTTTCTCATCTCTTAAATTAGTGACG
TTGATTCTCACTATTTGTGTTGCTATGACCGGTGCCGTACTTGCCACCGG
AGACAAAGTGCACCCTTTCATTCTCGCTGACAATCGCCATTTCACTTTCT
ATATCTACCGTCGTTGGTTGTTACGATCTCTAGGGCGAAGGCTTGCCCTT
GTCCCGGTATATGCTTGGGGGATTGCGGGTCCATTCTGTGAACGAGAGAT
AACACGCGGTACGAGACGACAGGAAATGGAATCAAGTCTGACCGAAGAAT
ACCAGAATCAGTGTATACAAAGAGCTGACTTTGTATCTGATATCGCTTTG
TTGCTTTGTGTATACATCACTCTAGTACCAGCTGCTCTCTTTGAACCAAG
ATACTTCGTTGTTGGAAGCACTTTGTTTTGCTTAAGGCGTTGTGCAAGAT
TGAGATCGCCACCGAACACACGCCTTTTGTGGTTTCTTTCGGCTACCATG
GTACTTCTGAACATAGCATTTGTCTTTGTTTTTGCTGAACTCCCGTTTCC
GAGACCTGTGGATGAACATATGCCGAAGGACACGTCCCCCGGGCGCTTCA
TGTTCTAA
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Coding sequence (CDS) from alignment at tig00000905_pilon:246314..247771+

>Ggra3408.t1 ID=Ggra3408.t1|Name=Ggra3408.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00000905_pilon:246314..247771+ (Gracilaria gracilis GNS1m male)
ATGTTCACAGCTCCGAAAATCTTTCTCGCGGCAGCTTTACTTTTGCTATG
CTTGCATACATGGATCAATTTTCGCCAACCTGAACCGTACATGGATGAAC
TGTTCCATGTTCCTCAGGCTCAAGAATTCTGTGAAGCTTTCATGGCCAGG
CTCCTTCCATCCTATGATCCTTCTATAACAACACCGCCTGTCCTGTATAT
TCCCAATGCTATTCTTGCAAGTGTGATGAGGAACACCGTTGTCTGCGGAA
CTAGGTGGCTTCGAGTTACTTCTGCTGTCATGTCCTTCCTCTCGCTTGCG
CTTATGGGTGATATTCTGCGGATCATTACTGAGCGGCGACGTGTTCATAA
TGAACGAATTGCTGCGGTATGTGTTCGAGGGGACCGTGAAGTAATCTGGT
TGCTTGCGTTTATCATTTGGCTTCATCCTGTCAATCTGTTCTATGCGAAC
TTATTCTATACAGACACCACATCGCTGTTTTGGGTGCTGGTCTTATGGAG
GATGAACCTCGGTAACAATTCCTTTTTGTCTGCACCTTTCGGAGTACTGG
GAAGCCTATCGAGACAAACCAACATGGTATGGCACGCATATATTGTCTTC
GACACCACATTTAGCTCGAATATCCTCATGAGTAGCTTTCGATTCTCTAC
AATTGTACTGAAGTTAATCAAGGACAATCCTTTTCACGTATTCGCTGGGA
TAGGATATGGGCTGTTCGTGCTTGTAAACAAAGGAATTGCACTCGGAGAC
AGATCACATCATGAGATGACTACCCATTACGCTATGTTTGCTTATTTCGC
AGCTTTCCATGGCACTTTCTTTGGTTTGATCCAACTCTCGGCCCCTTGGG
AAGCATTGAACATGGTGTACAGGGTTTTCTCATCTCTTAAATTAGTGACG
TTGATTCTCACTATTTGTGTTGCTATGACCGGTGCCGTACTTGCCACCGG
AGACAAAGTGCACCCTTTCATTCTCGCTGACAATCGCCATTTCACTTTCT
ATATCTACCGTCGTTGGTTGTTACGATCTCTAGGGCGAAGGCTTGCCCTT
GTCCCGGTATATGCTTGGGGGATTGCGGGTCCATTCTGTGAACGAGAGAT
AACACGCGGTACGAGACGACAGGAAATGGAATCAAGTCTGACCGAAGAAT
ACCAGAATCAGTGTATACAAAGAGCTGACTTTGTATCTGATATCGCTTTG
TTGCTTTGTGTATACATCACTCTAGTACCAGCTGCTCTCTTTGAACCAAG
ATACTTCGTTGTTGGAAGCACTTTGTTTTGCTTAAGGCGTTGTGCAAGAT
TGAGATCGCCACCGAACACACGCCTTTTGTGGTTTCTTTCGGCTACCATG
GTACTTCTGAACATAGCATTTGTCTTTGTTTTTGCTGAACTCCCGTTTCC
GAGACCTGTGGATGAACATATGCCGAAGGACACGTCCCCCGGGCGCTTCA
TGTTCTAA
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