Ggra3407.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3407.t1
Unique NameGgra3407.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:245074..245627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007515814.1
PFAMsMRP_L53
Max annot lvl3041|Chlorophyta
KEGG koko:K17434
Evalue2.57e-08
EggNOG OGs2E4RK@1|root,2SBKM@2759|Eukaryota,37XVK@33090|Viridiplantae,34IQY@3041|Chlorophyta
Description39S ribosomal protein L53/MRP-L53
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3407Ggra3407Gracilaria gracilis GNS1m malegenetig00000905_pilon 245074..245627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3407.t1Ggra3407.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 245074..245627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3407.t1.stop1Ggra3407.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 245074..245076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3407.t1.CDS1Ggra3407.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 245074..245231 -
Ggra3407.t1.CDS2Ggra3407.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000905_pilon 245316..245428 -
Ggra3407.t1.CDS3Ggra3407.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000905_pilon 245512..245627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3407.t1.exon1Ggra3407.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 245074..245231 -
Ggra3407.t1.exon2Ggra3407.t1.exon2Gracilaria gracilis GNS1m maleexontig00000905_pilon 245316..245428 -
Ggra3407.t1.exon3Ggra3407.t1.exon3Gracilaria gracilis GNS1m maleexontig00000905_pilon 245512..245627 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3407.t1.intron1Ggra3407.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000905_pilon 245232..245315 -
Ggra3407.t1.intron2Ggra3407.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000905_pilon 245429..245511 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3407.t1.start1Ggra3407.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 245625..245627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3407.t1 ID=Ggra3407.t1|Name=Ggra3407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MGQLVRSVAAARQAKELFKALQKVTVIANPFDYRATTAREFLRRVRTPPV
KRSNPKLQTELTISEEYGNPTVELLYGDGFKQKIHTSGLKIMDIMDEVER
VARWKGDGAQNPFEKLREERAKFLGLKK*
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spliced messenger RNA

>Ggra3407.t1 ID=Ggra3407.t1|Name=Ggra3407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000905_pilon:245074..245627- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCAACTAGTTCGTTCAGTGGCTGCAGCCCGCCAGGCAAAAGAACT
GTTCAAGGCATTACAAAAGGTCACCGTGATCGCTAACCCTTTCGATTATC
GCGCGACCACTGCGAGAGAGTTTTTAAGACGAGTGCGCACACCGCCTGTG
AAGCGATCTAACCCAAAGCTACAGACCGAACTCACAATTTCTGAGGAATA
TGGTAACCCGACCGTAGAATTGCTATATGGTGACGGCTTCAAGCAGAAAA
TCCATACCAGCGGTTTAAAGATCATGGACATTATGGATGAAGTTGAGAGG
GTTGCACGATGGAAAGGGGACGGGGCACAGAACCCATTCGAGAAGCTTAG
AGAAGAACGAGCAAAGTTTCTGGGTCTGAAGAAGTAA
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protein sequence of Ggra3407.t1

>Ggra3407.t1 ID=Ggra3407.t1|Name=Ggra3407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MGQLVRSVAAARQAKELFKALQKVTVIANPFDYRATTAREFLRRVRTPPV
KRSNPKLQTELTISEEYGNPTVELLYGDGFKQKIHTSGLKIMDIMDEVER
VARWKGDGAQNPFEKLREERAKFLGLKK*
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mRNA from alignment at tig00000905_pilon:245074..245627-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3407.t1 ID=Ggra3407.t1|Name=Ggra3407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp|location=Sequence derived from alignment at tig00000905_pilon:245074..245627- (Gracilaria gracilis GNS1m male)
ATGGGTCAACTAGTTCGTTCAGTGGCTGCAGCCCGCCAGGCAAAAGAACT
GTTCAAGGCATTACAAAAGGTCACCGTGATCGCTAACCCTTTCGATTATC
GCGCGACCACTGCGAGGTAGGGGGCACTCATTGCAGAGCATTTCGATTCC
GCCGTATACCGTATGAGTCCGAATGTCTAACCCCCAGATGCCATTGCAGA
GAGTTTTTAAGACGAGTGCGCACACCGCCTGTGAAGCGATCTAACCCAAA
GCTACAGACCGAACTCACAATTTCTGAGGAATATGGTAACCCGACCGTAG
AATTGCTATATGGTATGCTTTCTCACTTGTCCCTGTCGTCAAACATTATG
TTTACTAACATCCATACGGTTTCCGCTTGCAACGCTTACTCTGCAGGTGA
CGGCTTCAAGCAGAAAATCCATACCAGCGGTTTAAAGATCATGGACATTA
TGGATGAAGTTGAGAGGGTTGCACGATGGAAAGGGGACGGGGCACAGAAC
CCATTCGAGAAGCTTAGAGAAGAACGAGCAAAGTTTCTGGGTCTGAAGAA
GTAA
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Coding sequence (CDS) from alignment at tig00000905_pilon:245074..245627-

>Ggra3407.t1 ID=Ggra3407.t1|Name=Ggra3407.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000905_pilon:245074..245627- (Gracilaria gracilis GNS1m male)
ATGGGTCAACTAGTTCGTTCAGTGGCTGCAGCCCGCCAGGCAAAAGAACT
GTTCAAGGCATTACAAAAGGTCACCGTGATCGCTAACCCTTTCGATTATC
GCGCGACCACTGCGAGAGAGTTTTTAAGACGAGTGCGCACACCGCCTGTG
AAGCGATCTAACCCAAAGCTACAGACCGAACTCACAATTTCTGAGGAATA
TGGTAACCCGACCGTAGAATTGCTATATGGTGACGGCTTCAAGCAGAAAA
TCCATACCAGCGGTTTAAAGATCATGGACATTATGGATGAAGTTGAGAGG
GTTGCACGATGGAAAGGGGACGGGGCACAGAACCCATTCGAGAAGCTTAG
AGAAGAACGAGCAAAGTTTCTGGGTCTGAAGAAGTAA
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