Ggra3376.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3376.t1
Unique NameGgra3376.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:161838..162752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog383372.Rcas_0381
PFAMsRmlD_sub_bind
Max annot lvl32061|Chloroflexia
KEGG rclassRC00182
KEGG koko:K00067
KEGG ReactionR02777
KEGG Pathwayko00521,ko00523,ko01130,map00521,map00523,map01130
KEGG ModuleM00793
Evalue6.65e-26
EggNOG OGsCOG1091@1|root,COG1091@2|Bacteria,2G9A2@200795|Chloroflexi,375MR@32061|Chloroflexia
EC1.1.1.133
DescriptionPFAM NAD-dependent epimerase dehydratase
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3376Ggra3376Gracilaria gracilis GNS1m malegenetig00000189_pilon 161838..162752 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3376.t1.start1Ggra3376.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 161838..161840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3376.t1.CDS1Ggra3376.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 161838..162752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3376.t1.exon1Ggra3376.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 161838..162752 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3376.t1.stop1Ggra3376.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 162750..162752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3376.t1Ggra3376.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 161838..162752 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3376.t1 ID=Ggra3376.t1|Name=Ggra3376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MGTLVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVT
WVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVD
DVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVY
KQQMEQQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIE
LFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLL
AKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLNTHIDGISE
RLSK*
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spliced messenger RNA

>Ggra3376.t1 ID=Ggra3376.t1|Name=Ggra3376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000189_pilon:161838..162752+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACGCTGGTCATCATCGGCGCCACGGGCGAGCTCGGCAGCAAGAC
CGTTCTGGCCGCCTGCGCGGACGACGCCGCCGCATGGCAGGGCGATATCA
TCGCCACGTACAACAATAACCCGCCGGTGCTCGGGCTGCCGCGCGTCACG
TGGGTCAAGCTCGATTGCTCCGATCATAAGGCCGTGCGCTCGCTCATCGT
GTCGCTGGCTGAGCTGGCGGCCGTGGTGTACTGCGCGGTGCCGAAGCATG
GCGGCGCGGCTGACAAGGGTGGTGGGCTTGTTCGCGCGGGTATTGTGGAT
GATGTGCTAAACTGTGCGGAGGCTGTTGCTTTGATTGACGCGAGGTTTGT
CGCTGTTTCGACTGACTTGGTGTTTGATGGCCGCATTCCAGAAGGAGAGT
GTTATGATGAAGCTAGCCAGACTTGTCCACCCAACCCGTATGGCGTGTAC
AAGCAGCAAATGGAGCAGCAGTTGTTGGCGCTCTCTGGAAATATTGTCGT
GGCGCGTTCCAGTTTGATTCTCACAATGGATCAACCACCGTACGGAAAGG
GTATTCAGTTTGTCGTGGATTGTATCAATGGCAAGAAGGGTGAGATCGAA
CTCTTCACAGACGAATGGCGCAACATGTCATTCTCAGATGATCTCGGACG
CGCACTTGTTGAACTGGCCAAGCCACAGTGCACACACGTTGGCATCATTC
ATATGGTCAGTGATGAGGTGACGAATCGATGGGAGCTGGCTAAACTGCTG
GCGAAACGCCTCGGTCTGGAGGACAAGCTCGGAAAGTTTGCAAAGAGTGG
GCTGTCGGCAGAGAGCGGTCTTGACCGCCCACTGAACTGCGCTCTGTCTA
CCAAATTGAAGAACAAGGTCCTCAACACCCATATCGATGGAATCTCTGAA
CGACTGTCAAAATAG
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protein sequence of Ggra3376.t1

>Ggra3376.t1 ID=Ggra3376.t1|Name=Ggra3376.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MGTLVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVT
WVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVD
DVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVY
KQQMEQQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIE
LFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLL
AKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLNTHIDGISE
RLSK*
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mRNA from alignment at tig00000189_pilon:161838..162752+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3376.t1 ID=Ggra3376.t1|Name=Ggra3376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000189_pilon:161838..162752+ (Gracilaria gracilis GNS1m male)
ATGGGCACGCTGGTCATCATCGGCGCCACGGGCGAGCTCGGCAGCAAGAC
CGTTCTGGCCGCCTGCGCGGACGACGCCGCCGCATGGCAGGGCGATATCA
TCGCCACGTACAACAATAACCCGCCGGTGCTCGGGCTGCCGCGCGTCACG
TGGGTCAAGCTCGATTGCTCCGATCATAAGGCCGTGCGCTCGCTCATCGT
GTCGCTGGCTGAGCTGGCGGCCGTGGTGTACTGCGCGGTGCCGAAGCATG
GCGGCGCGGCTGACAAGGGTGGTGGGCTTGTTCGCGCGGGTATTGTGGAT
GATGTGCTAAACTGTGCGGAGGCTGTTGCTTTGATTGACGCGAGGTTTGT
CGCTGTTTCGACTGACTTGGTGTTTGATGGCCGCATTCCAGAAGGAGAGT
GTTATGATGAAGCTAGCCAGACTTGTCCACCCAACCCGTATGGCGTGTAC
AAGCAGCAAATGGAGCAGCAGTTGTTGGCGCTCTCTGGAAATATTGTCGT
GGCGCGTTCCAGTTTGATTCTCACAATGGATCAACCACCGTACGGAAAGG
GTATTCAGTTTGTCGTGGATTGTATCAATGGCAAGAAGGGTGAGATCGAA
CTCTTCACAGACGAATGGCGCAACATGTCATTCTCAGATGATCTCGGACG
CGCACTTGTTGAACTGGCCAAGCCACAGTGCACACACGTTGGCATCATTC
ATATGGTCAGTGATGAGGTGACGAATCGATGGGAGCTGGCTAAACTGCTG
GCGAAACGCCTCGGTCTGGAGGACAAGCTCGGAAAGTTTGCAAAGAGTGG
GCTGTCGGCAGAGAGCGGTCTTGACCGCCCACTGAACTGCGCTCTGTCTA
CCAAATTGAAGAACAAGGTCCTCAACACCCATATCGATGGAATCTCTGAA
CGACTGTCAAAATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:161838..162752+

>Ggra3376.t1 ID=Ggra3376.t1|Name=Ggra3376.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000189_pilon:161838..162752+ (Gracilaria gracilis GNS1m male)
ATGGGCACGCTGGTCATCATCGGCGCCACGGGCGAGCTCGGCAGCAAGAC
CGTTCTGGCCGCCTGCGCGGACGACGCCGCCGCATGGCAGGGCGATATCA
TCGCCACGTACAACAATAACCCGCCGGTGCTCGGGCTGCCGCGCGTCACG
TGGGTCAAGCTCGATTGCTCCGATCATAAGGCCGTGCGCTCGCTCATCGT
GTCGCTGGCTGAGCTGGCGGCCGTGGTGTACTGCGCGGTGCCGAAGCATG
GCGGCGCGGCTGACAAGGGTGGTGGGCTTGTTCGCGCGGGTATTGTGGAT
GATGTGCTAAACTGTGCGGAGGCTGTTGCTTTGATTGACGCGAGGTTTGT
CGCTGTTTCGACTGACTTGGTGTTTGATGGCCGCATTCCAGAAGGAGAGT
GTTATGATGAAGCTAGCCAGACTTGTCCACCCAACCCGTATGGCGTGTAC
AAGCAGCAAATGGAGCAGCAGTTGTTGGCGCTCTCTGGAAATATTGTCGT
GGCGCGTTCCAGTTTGATTCTCACAATGGATCAACCACCGTACGGAAAGG
GTATTCAGTTTGTCGTGGATTGTATCAATGGCAAGAAGGGTGAGATCGAA
CTCTTCACAGACGAATGGCGCAACATGTCATTCTCAGATGATCTCGGACG
CGCACTTGTTGAACTGGCCAAGCCACAGTGCACACACGTTGGCATCATTC
ATATGGTCAGTGATGAGGTGACGAATCGATGGGAGCTGGCTAAACTGCTG
GCGAAACGCCTCGGTCTGGAGGACAAGCTCGGAAAGTTTGCAAAGAGTGG
GCTGTCGGCAGAGAGCGGTCTTGACCGCCCACTGAACTGCGCTCTGTCTA
CCAAATTGAAGAACAAGGTCCTCAACACCCATATCGATGGAATCTCTGAA
CGACTGTCAAAATAG
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