Ggra3369.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3369.t1
Unique Name	Ggra3369.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	656

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:136485..138452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3369	Ggra3369	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 136485..138452 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3369.t1.start1	Ggra3369.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 136485..136487 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3369.t1.CDS1	Ggra3369.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 136485..138452 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3369.t1.exon1	Ggra3369.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 136485..138452 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3369.t1.stop1	Ggra3369.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 138450..138452 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3369.t1	Ggra3369.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 136485..138452 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:136485..138452+
coding sequence from alignment at tig00000189_pilon:136485..138452+

mRNA sequence

>Ggra3369.t1 ID=Ggra3369.t1|Name=Ggra3369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=656bp
MIRHDPSPPPPRSPPRHAPPPPQPRGAFILSFWVPFDVWSRIAAFLTAVS
DLNSFLKVCRAAYNAVCTTQAPLYKDVCHHFRQRQFCIPADLVDKVLMAH
VVPPDGQSLVMFLDETQSGNGIELVWIRGTHIRRVQLGLDTVSASTVSNI
RFSPDGSRIAFLITLAHGNLIAEDLDPLHRLRGWESHTEVRGHPYDITYE
PCEDCTVQIVSLVSDSCGYPHDLIVHTFTHVFVPEYGFDMVWRGTSQKPE
LAFAAMLHSTAGAATYLVRWKTFASPTETNFVFMACIDGASIELLHDKRF
AMLNYEATRCTSRIELGKDAQFIFFDTISKFGVLRFDQVEDAASAKVTRA
DLPNDPIISRVCCASTATTSETRGQHNCAGQKRSAGNSDKCNLKVHNGRE
HCCSHNDEVARTSRMAPNGNLLCSVVCVHCGPHSRNGRRVSQRHIEMRSS
VSGRLLYRQLIPRTFKTSRRRINHIHIPYEKSDNVTRCTIGFSEDSLLLF
IWDTLFTNTEVVASKTLPHVYEAETGRLVQDFNEIASTVSYDQIQTAPNG
LTLYGTRWAKAKVNMDAIDVVSGRVLKTEVLADGLAAPAEFSSDSVYILP
NQNLVAMSRGRLDSFWESTRGALGCEWRSERRSTPFLSRYDSMVRRKQPS
ISEIS*

spliced messenger RNA

>Ggra3369.t1 ID=Ggra3369.t1|Name=Ggra3369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1968bp|location=Sequence derived from alignment at tig00000189_pilon:136485..138452+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCCATGACCCCAGTcctcccccgccgcgctccccaccccgtca
cgccccgccgccgccccagccgcGTGGCGCCTTCATTCTCTCCTTCTGGG
TTCCGTTCGACGTCTGGTCGCGAATCGCCGCCTTCCTCACCGCCGTCTCC
GACCTCAACTCCTTCCTCAAGGTCTGTCGCGCCGCGTACAACGCTGTGTG
CACCACGCAGGCGCCGCTCTACAAGGACGTGTGCCACCACTTTCGACAAC
GCCAGTTTTGCATCCCAGCAGACCTCGTCGACAAGGTGCTCATGGCCCAC
GTCGTCCCTCCCGATGGGCAGAGTCTGGTCATGTTTCTTGACGAGACCCA
ATCCGGAAACGGTATTGAGCTTGTCTGGATCCGCGGCACCCACATTCGCC
GCGTCCAGCTTGGCTTGGACACTGTTTCAGCCAGCACCGTCAGCAACATA
CGCTTCTCCCCGGACGGCTCTCGTATAGCCTTTCTTATCACTCTGGCCCA
CGGCAATCTCATTGCAGAGGATCTCGATCCCTTGCACCGCCTCCGAGGCT
GGGAATCGCACACCGAGGTTCGTGGTCACCCGTACGATATTACTTACGAG
CCGTGCGAGGATTGCACCGTTCAGATTGTGTCTCTCGTATCCGACAGCTG
TGGTTATCCGCATGACCTCATCGTGCACACCTTCACGCACGTGTTTGTGC
CGGAATACGGCTTCGATATGGTATGGAGGGGCACCAGTCAAAAGCCGGAG
TTAGCTTTCGCAGCCATGCTGCATTCAACAGCGGGAGCCGCCACATACCT
CGTCAGATGGAAAACGTTTGCCTCCCCTACTGAAACCAATTTTGTGTTCA
TGGCCTGTATTGACGGTGCGAGCATCGAGTTGTTGCACGACAAGCGATTT
GCAATGCTAAATTACGAAGCAACGAGGTGCACCTCAAGGATTGAACTAGG
CAAAGATGCCCAGTTTATCTTCTTTGATACTATTTCCAAGTTCGGTGTCC
TGAGATTTGACCAGGTGGAAGATGCCGCATCCGCAAAGGTTACCCGAGCA
GATCTCCCAAACGATCCGATTATTTCGCGAGTATGCTGTGCTTCCACGGC
AACAACATCCGAAACTAGAGGACAACACAATTGTGCTGGACAAAAACGTA
GCGCTGGGAATTCGGACAAATGCAATCTAAAGGTTCATAATGGGAGAGAG
CATTGTTGTTCTCACAATGATGAAGTCGCGCGTACAAGCCGGATGGCGCC
AAACGGGAACCTTCTTTGTTCAGTGGTCTGCGTACATTGCGGTCCACACA
GCAGGAATGGTAGGCGTGTTTCACAACGTCATATTGAAATGCGTTCCAGC
GTGAGTGGTCGCTTGTTATATCGTCAATTGATTCCTCGAACCTTTAAAAC
ATCTCGACGCAGGATCAATCACATTCATATCCCTTATGAGAAATCTGACA
ATGTTACTAGATGCACCATCGGCTTTTCAGAAGATTCTCTTCTTCTTTTT
ATATGGGATACTTTATTTACAAACACCGAAGTTGTAGCCTCGAAGACACT
CCCACATGTGTATGAGGCCGAAACGGGTCGTCTGGTGCAAGATTTCAACG
AAATTGCGTCTACTGTTTCTTACGATCAAATACAAACCGCACCGAATGGT
CTTACGCTATACGGCACTAGATGGGCGAAGGCTAAGGTGAATATGGATGC
TATCGACGTGGTTTCCGGTCGCGTTCTCAAGACCGAGGTTCTAGCTGATG
GCCTGGCAGCACCAGCCGAATTTTCGTCTGACTCAGTGTACATATTACCG
AACCAGAACCTCGTAGCAATGTCGAGGGGGAGATTGGACAGCTTCTGGGA
ATCCACGCGCGGGGCTCTTGGATGCGAATGGAGGTCCGAGAGGCGGAGCA
CCCCATTTCTATCAAGATACGATTCTATGGTGAGGAGGAAACAACCTAGT
ATCAGTGAAATAAGCTAA

protein sequence of Ggra3369.t1

>Ggra3369.t1 ID=Ggra3369.t1|Name=Ggra3369.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=656bp
MIRHDPSPPPPRSPPRHAPPPPQPRGAFILSFWVPFDVWSRIAAFLTAVS
DLNSFLKVCRAAYNAVCTTQAPLYKDVCHHFRQRQFCIPADLVDKVLMAH
VVPPDGQSLVMFLDETQSGNGIELVWIRGTHIRRVQLGLDTVSASTVSNI
RFSPDGSRIAFLITLAHGNLIAEDLDPLHRLRGWESHTEVRGHPYDITYE
PCEDCTVQIVSLVSDSCGYPHDLIVHTFTHVFVPEYGFDMVWRGTSQKPE
LAFAAMLHSTAGAATYLVRWKTFASPTETNFVFMACIDGASIELLHDKRF
AMLNYEATRCTSRIELGKDAQFIFFDTISKFGVLRFDQVEDAASAKVTRA
DLPNDPIISRVCCASTATTSETRGQHNCAGQKRSAGNSDKCNLKVHNGRE
HCCSHNDEVARTSRMAPNGNLLCSVVCVHCGPHSRNGRRVSQRHIEMRSS
VSGRLLYRQLIPRTFKTSRRRINHIHIPYEKSDNVTRCTIGFSEDSLLLF
IWDTLFTNTEVVASKTLPHVYEAETGRLVQDFNEIASTVSYDQIQTAPNG
LTLYGTRWAKAKVNMDAIDVVSGRVLKTEVLADGLAAPAEFSSDSVYILP
NQNLVAMSRGRLDSFWESTRGALGCEWRSERRSTPFLSRYDSMVRRKQPS
ISEIS*

mRNA from alignment at tig00000189_pilon:136485..138452+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3369.t1 ID=Ggra3369.t1|Name=Ggra3369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1968bp|location=Sequence derived from alignment at tig00000189_pilon:136485..138452+ (Gracilaria gracilis GNS1m male)
ATGATTCGCCATGACCCCAGTcctcccccgccgcgctccccaccccgtca
cgccccgccgccgccccagccgcGTGGCGCCTTCATTCTCTCCTTCTGGG
TTCCGTTCGACGTCTGGTCGCGAATCGCCGCCTTCCTCACCGCCGTCTCC
GACCTCAACTCCTTCCTCAAGGTCTGTCGCGCCGCGTACAACGCTGTGTG
CACCACGCAGGCGCCGCTCTACAAGGACGTGTGCCACCACTTTCGACAAC
GCCAGTTTTGCATCCCAGCAGACCTCGTCGACAAGGTGCTCATGGCCCAC
GTCGTCCCTCCCGATGGGCAGAGTCTGGTCATGTTTCTTGACGAGACCCA
ATCCGGAAACGGTATTGAGCTTGTCTGGATCCGCGGCACCCACATTCGCC
GCGTCCAGCTTGGCTTGGACACTGTTTCAGCCAGCACCGTCAGCAACATA
CGCTTCTCCCCGGACGGCTCTCGTATAGCCTTTCTTATCACTCTGGCCCA
CGGCAATCTCATTGCAGAGGATCTCGATCCCTTGCACCGCCTCCGAGGCT
GGGAATCGCACACCGAGGTTCGTGGTCACCCGTACGATATTACTTACGAG
CCGTGCGAGGATTGCACCGTTCAGATTGTGTCTCTCGTATCCGACAGCTG
TGGTTATCCGCATGACCTCATCGTGCACACCTTCACGCACGTGTTTGTGC
CGGAATACGGCTTCGATATGGTATGGAGGGGCACCAGTCAAAAGCCGGAG
TTAGCTTTCGCAGCCATGCTGCATTCAACAGCGGGAGCCGCCACATACCT
CGTCAGATGGAAAACGTTTGCCTCCCCTACTGAAACCAATTTTGTGTTCA
TGGCCTGTATTGACGGTGCGAGCATCGAGTTGTTGCACGACAAGCGATTT
GCAATGCTAAATTACGAAGCAACGAGGTGCACCTCAAGGATTGAACTAGG
CAAAGATGCCCAGTTTATCTTCTTTGATACTATTTCCAAGTTCGGTGTCC
TGAGATTTGACCAGGTGGAAGATGCCGCATCCGCAAAGGTTACCCGAGCA
GATCTCCCAAACGATCCGATTATTTCGCGAGTATGCTGTGCTTCCACGGC
AACAACATCCGAAACTAGAGGACAACACAATTGTGCTGGACAAAAACGTA
GCGCTGGGAATTCGGACAAATGCAATCTAAAGGTTCATAATGGGAGAGAG
CATTGTTGTTCTCACAATGATGAAGTCGCGCGTACAAGCCGGATGGCGCC
AAACGGGAACCTTCTTTGTTCAGTGGTCTGCGTACATTGCGGTCCACACA
GCAGGAATGGTAGGCGTGTTTCACAACGTCATATTGAAATGCGTTCCAGC
GTGAGTGGTCGCTTGTTATATCGTCAATTGATTCCTCGAACCTTTAAAAC
ATCTCGACGCAGGATCAATCACATTCATATCCCTTATGAGAAATCTGACA
ATGTTACTAGATGCACCATCGGCTTTTCAGAAGATTCTCTTCTTCTTTTT
ATATGGGATACTTTATTTACAAACACCGAAGTTGTAGCCTCGAAGACACT
CCCACATGTGTATGAGGCCGAAACGGGTCGTCTGGTGCAAGATTTCAACG
AAATTGCGTCTACTGTTTCTTACGATCAAATACAAACCGCACCGAATGGT
CTTACGCTATACGGCACTAGATGGGCGAAGGCTAAGGTGAATATGGATGC
TATCGACGTGGTTTCCGGTCGCGTTCTCAAGACCGAGGTTCTAGCTGATG
GCCTGGCAGCACCAGCCGAATTTTCGTCTGACTCAGTGTACATATTACCG
AACCAGAACCTCGTAGCAATGTCGAGGGGGAGATTGGACAGCTTCTGGGA
ATCCACGCGCGGGGCTCTTGGATGCGAATGGAGGTCCGAGAGGCGGAGCA
CCCCATTTCTATCAAGATACGATTCTATGGTGAGGAGGAAACAACCTAGT
ATCAGTGAAATAAGCTAA

Coding sequence (CDS) from alignment at tig00000189_pilon:136485..138452+

>Ggra3369.t1 ID=Ggra3369.t1|Name=Ggra3369.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1968bp|location=Sequence derived from alignment at tig00000189_pilon:136485..138452+ (Gracilaria gracilis GNS1m male)
ATGATTCGCCATGACCCCAGTcctcccccgccgcgctccccaccccgtca
cgccccgccgccgccccagccgcGTGGCGCCTTCATTCTCTCCTTCTGGG
TTCCGTTCGACGTCTGGTCGCGAATCGCCGCCTTCCTCACCGCCGTCTCC
GACCTCAACTCCTTCCTCAAGGTCTGTCGCGCCGCGTACAACGCTGTGTG
CACCACGCAGGCGCCGCTCTACAAGGACGTGTGCCACCACTTTCGACAAC
GCCAGTTTTGCATCCCAGCAGACCTCGTCGACAAGGTGCTCATGGCCCAC
GTCGTCCCTCCCGATGGGCAGAGTCTGGTCATGTTTCTTGACGAGACCCA
ATCCGGAAACGGTATTGAGCTTGTCTGGATCCGCGGCACCCACATTCGCC
GCGTCCAGCTTGGCTTGGACACTGTTTCAGCCAGCACCGTCAGCAACATA
CGCTTCTCCCCGGACGGCTCTCGTATAGCCTTTCTTATCACTCTGGCCCA
CGGCAATCTCATTGCAGAGGATCTCGATCCCTTGCACCGCCTCCGAGGCT
GGGAATCGCACACCGAGGTTCGTGGTCACCCGTACGATATTACTTACGAG
CCGTGCGAGGATTGCACCGTTCAGATTGTGTCTCTCGTATCCGACAGCTG
TGGTTATCCGCATGACCTCATCGTGCACACCTTCACGCACGTGTTTGTGC
CGGAATACGGCTTCGATATGGTATGGAGGGGCACCAGTCAAAAGCCGGAG
TTAGCTTTCGCAGCCATGCTGCATTCAACAGCGGGAGCCGCCACATACCT
CGTCAGATGGAAAACGTTTGCCTCCCCTACTGAAACCAATTTTGTGTTCA
TGGCCTGTATTGACGGTGCGAGCATCGAGTTGTTGCACGACAAGCGATTT
GCAATGCTAAATTACGAAGCAACGAGGTGCACCTCAAGGATTGAACTAGG
CAAAGATGCCCAGTTTATCTTCTTTGATACTATTTCCAAGTTCGGTGTCC
TGAGATTTGACCAGGTGGAAGATGCCGCATCCGCAAAGGTTACCCGAGCA
GATCTCCCAAACGATCCGATTATTTCGCGAGTATGCTGTGCTTCCACGGC
AACAACATCCGAAACTAGAGGACAACACAATTGTGCTGGACAAAAACGTA
GCGCTGGGAATTCGGACAAATGCAATCTAAAGGTTCATAATGGGAGAGAG
CATTGTTGTTCTCACAATGATGAAGTCGCGCGTACAAGCCGGATGGCGCC
AAACGGGAACCTTCTTTGTTCAGTGGTCTGCGTACATTGCGGTCCACACA
GCAGGAATGGTAGGCGTGTTTCACAACGTCATATTGAAATGCGTTCCAGC
GTGAGTGGTCGCTTGTTATATCGTCAATTGATTCCTCGAACCTTTAAAAC
ATCTCGACGCAGGATCAATCACATTCATATCCCTTATGAGAAATCTGACA
ATGTTACTAGATGCACCATCGGCTTTTCAGAAGATTCTCTTCTTCTTTTT
ATATGGGATACTTTATTTACAAACACCGAAGTTGTAGCCTCGAAGACACT
CCCACATGTGTATGAGGCCGAAACGGGTCGTCTGGTGCAAGATTTCAACG
AAATTGCGTCTACTGTTTCTTACGATCAAATACAAACCGCACCGAATGGT
CTTACGCTATACGGCACTAGATGGGCGAAGGCTAAGGTGAATATGGATGC
TATCGACGTGGTTTCCGGTCGCGTTCTCAAGACCGAGGTTCTAGCTGATG
GCCTGGCAGCACCAGCCGAATTTTCGTCTGACTCAGTGTACATATTACCG
AACCAGAACCTCGTAGCAATGTCGAGGGGGAGATTGGACAGCTTCTGGGA
ATCCACGCGCGGGGCTCTTGGATGCGAATGGAGGTCCGAGAGGCGGAGCA
CCCCATTTCTATCAAGATACGATTCTATGGTGAGGAGGAAACAACCTAGT
ATCAGTGAAATAAGCTAA