Ggra3292.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3292.t1
Unique Name	Ggra3292.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	537

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:482430..484040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3292	Ggra3292	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 482430..484040 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3292.t1.stop1	Ggra3292.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 482430..482432 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3292.t1.CDS1	Ggra3292.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 482430..484040 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3292.t1.exon1	Ggra3292.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 482430..484040 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3292.t1.start1	Ggra3292.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 484038..484040 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3292.t1	Ggra3292.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 482430..484040 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:482430..484040-
coding sequence from alignment at tig00000851_pilon:482430..484040-

mRNA sequence

>Ggra3292.t1 ID=Ggra3292.t1|Name=Ggra3292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp
MVILFQPTGISYFNSMFDRTILNVVFSGLLAFLILLEIENVADVLMYRAH
NINKRSIDQYILFSRVSSLRGILQTLSGLEYSSKEIRTEPMHHRKRWRAR
LHCALDDGADNLEADRSSEKKESDDERAQGTTIVSTLVDTERSLSVTDLE
ESQPSAGPTELRRIGIPVRDGVPRPHVRLLGMVVPLLFRLTLLTLELLTI
YFSSNISEEVKAGRSFNVRLKEGNAVIKTSQADNSPCREFIHPAKGVEHN
GSVLLCIGSEHTHEFPTENDTFLYFSFDPSQNQMEYVVGDLYGKEISVYV
RMFINLIGDEGVELGPLRPDLPVDDNHSKKVIQRVMNRAISRLGFGMKIE
QIEEIVDDRNVIQYKYPRTFGNTSKLAIERELLSELHTLSLDLNITKEGE
EDALYVFKKDRGYFRHENPVIAIVGKNRLAQGWLVIAWVTLLIVRFVAQR
FLISFDELAYLALKTVHGADISVGPLANVQKKERLSIGKFSDGRVGHIGF
RAANCNQDRVENFYGCAAVWGSGECLRTRERLVQRR*

spliced messenger RNA

>Ggra3292.t1 ID=Ggra3292.t1|Name=Ggra3292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000851_pilon:482430..484040- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATCCTCTTTCAGCCAACGGGTATATCCTACTTCAACAGCATGTT
TGACCGCACCATCTTGAACGTTGTCTTCAGTGGATTGCTTGCCTTTCTCA
TTCTGCTCGAGATCGAAAATGTTGCAGATGTGCTCATGTATCGTGCACAT
AACATCAACAAGCGCTCCATAGACCAATACATTCTGTTCTCGCGAGTGTC
TAGCTTGAGGGGCATCTTACAGACGCTTTCCGGATTGGAGTATTCTTCAA
AGGAGATTCGTACCGAGCCGATGCATCATCGAAAGAGATGGAGAGCTCGA
CTACATTGTGCACTGGACGACGGTGCTGATAACCTCGAGGCAGATCGGAG
CTCCGAGAAGAAGGAGAGTGATGATGAGCGCGCTCAAGGTACAACTATTG
TGTCAACCCTCGTCGATACTGAACGATCTTTGTCTGTAACGGATCTCGAA
GAATCTCAGCCATCAGCGGGTCCCACGGAGCTGCGTCGAATTGGAATTCC
TGTACGTGACGGTGTGCCGCGTCCACATGTGCGACTTTTGGGCATGGTTG
TGCCCCTCCTGTTTCGCTTGACATTGCTCACCCTGGAGTTATTAACCATA
TACTTCAGTTCGAACATCTCTGAAGAGGTGAAAGCCGGCCGTTCGTTCAA
TGTACGTCTCAAAGAAGGCAACGCTGTCATCAAAACGTCCCAGGCTGATA
ACTCTCCGTGTCGGGAATTCATCCACCCTGCGAAGGGAGTAGAGCACAAT
GGAAGTGTACTATTGTGTATTGGCAGTGAACATACCCACGAATTCCCGAC
AGAAAATGACACCTTTCTGTACTTCAGTTTTGATCCGAGCCAAAATCAAA
TGGAGTACGTTGTTGGAGATCTGTATGGCAAGGAGATTTCCGTTTATGTG
CGTATGTTCATCAATTTGATTGGTGATGAGGGGGTGGAATTGGGCCCATT
GCGCCCCGATTTACCGGTCGATGACAATCACTCCAAGAAAGTGATTCAGA
GAGTCATGAATCGAGCGATTAGCAGGTTGGGATTTGGTATGAAGATCGAG
CAAATTGAAGAGATTGTCGACGACAGGAATGTCATTCAGTACAAGTATCC
ACGCACTTTTGGCAATACGAGTAAGCTCGCGATTGAACGCGAATTGCTTT
CTGAGTTACACACCTTAAGCTTGGATTTGAACATTACAAAAGAAGGAGAA
GAGGATGCACTTTACGTGTTTAAGAAGGACAGAGGATACTTCCGACACGA
GAATCCGGTCATAGCCATTGTCGGCAAAAACCGTCTCGCGCAAGGTTGGC
TCGTAATTGCGTGGGTGACTTTGCTAATTGTGCGCTTCGTCGCGCAACGG
TTTCTCATTTCATTTGATGAATTGGCGTACCTGGCCTTGAAAACGGTTCA
TGGCGCGGACATATCGGTTGGACCTCTGGCAAATGTTCAGAAGAAGGAGA
GATTGTCTATTGGGAAGTTTTCTGACGGACGTGTGGGGCATATTGGCTTT
CGTGCGGCAAATTGTAACCAGGATCGCGTGGAGAATTTCTACGGCTGCGC
AGCTGTCTGGGGATCTGGAGAGTGTCTGAGGACGAGGGAGCGCTTGGTCC
AACGAAGGTGA

protein sequence of Ggra3292.t1

>Ggra3292.t1 ID=Ggra3292.t1|Name=Ggra3292.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=537bp
MVILFQPTGISYFNSMFDRTILNVVFSGLLAFLILLEIENVADVLMYRAH
NINKRSIDQYILFSRVSSLRGILQTLSGLEYSSKEIRTEPMHHRKRWRAR
LHCALDDGADNLEADRSSEKKESDDERAQGTTIVSTLVDTERSLSVTDLE
ESQPSAGPTELRRIGIPVRDGVPRPHVRLLGMVVPLLFRLTLLTLELLTI
YFSSNISEEVKAGRSFNVRLKEGNAVIKTSQADNSPCREFIHPAKGVEHN
GSVLLCIGSEHTHEFPTENDTFLYFSFDPSQNQMEYVVGDLYGKEISVYV
RMFINLIGDEGVELGPLRPDLPVDDNHSKKVIQRVMNRAISRLGFGMKIE
QIEEIVDDRNVIQYKYPRTFGNTSKLAIERELLSELHTLSLDLNITKEGE
EDALYVFKKDRGYFRHENPVIAIVGKNRLAQGWLVIAWVTLLIVRFVAQR
FLISFDELAYLALKTVHGADISVGPLANVQKKERLSIGKFSDGRVGHIGF
RAANCNQDRVENFYGCAAVWGSGECLRTRERLVQRR*

mRNA from alignment at tig00000851_pilon:482430..484040-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3292.t1 ID=Ggra3292.t1|Name=Ggra3292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000851_pilon:482430..484040- (Gracilaria gracilis GNS1m male)
ATGGTGATCCTCTTTCAGCCAACGGGTATATCCTACTTCAACAGCATGTT
TGACCGCACCATCTTGAACGTTGTCTTCAGTGGATTGCTTGCCTTTCTCA
TTCTGCTCGAGATCGAAAATGTTGCAGATGTGCTCATGTATCGTGCACAT
AACATCAACAAGCGCTCCATAGACCAATACATTCTGTTCTCGCGAGTGTC
TAGCTTGAGGGGCATCTTACAGACGCTTTCCGGATTGGAGTATTCTTCAA
AGGAGATTCGTACCGAGCCGATGCATCATCGAAAGAGATGGAGAGCTCGA
CTACATTGTGCACTGGACGACGGTGCTGATAACCTCGAGGCAGATCGGAG
CTCCGAGAAGAAGGAGAGTGATGATGAGCGCGCTCAAGGTACAACTATTG
TGTCAACCCTCGTCGATACTGAACGATCTTTGTCTGTAACGGATCTCGAA
GAATCTCAGCCATCAGCGGGTCCCACGGAGCTGCGTCGAATTGGAATTCC
TGTACGTGACGGTGTGCCGCGTCCACATGTGCGACTTTTGGGCATGGTTG
TGCCCCTCCTGTTTCGCTTGACATTGCTCACCCTGGAGTTATTAACCATA
TACTTCAGTTCGAACATCTCTGAAGAGGTGAAAGCCGGCCGTTCGTTCAA
TGTACGTCTCAAAGAAGGCAACGCTGTCATCAAAACGTCCCAGGCTGATA
ACTCTCCGTGTCGGGAATTCATCCACCCTGCGAAGGGAGTAGAGCACAAT
GGAAGTGTACTATTGTGTATTGGCAGTGAACATACCCACGAATTCCCGAC
AGAAAATGACACCTTTCTGTACTTCAGTTTTGATCCGAGCCAAAATCAAA
TGGAGTACGTTGTTGGAGATCTGTATGGCAAGGAGATTTCCGTTTATGTG
CGTATGTTCATCAATTTGATTGGTGATGAGGGGGTGGAATTGGGCCCATT
GCGCCCCGATTTACCGGTCGATGACAATCACTCCAAGAAAGTGATTCAGA
GAGTCATGAATCGAGCGATTAGCAGGTTGGGATTTGGTATGAAGATCGAG
CAAATTGAAGAGATTGTCGACGACAGGAATGTCATTCAGTACAAGTATCC
ACGCACTTTTGGCAATACGAGTAAGCTCGCGATTGAACGCGAATTGCTTT
CTGAGTTACACACCTTAAGCTTGGATTTGAACATTACAAAAGAAGGAGAA
GAGGATGCACTTTACGTGTTTAAGAAGGACAGAGGATACTTCCGACACGA
GAATCCGGTCATAGCCATTGTCGGCAAAAACCGTCTCGCGCAAGGTTGGC
TCGTAATTGCGTGGGTGACTTTGCTAATTGTGCGCTTCGTCGCGCAACGG
TTTCTCATTTCATTTGATGAATTGGCGTACCTGGCCTTGAAAACGGTTCA
TGGCGCGGACATATCGGTTGGACCTCTGGCAAATGTTCAGAAGAAGGAGA
GATTGTCTATTGGGAAGTTTTCTGACGGACGTGTGGGGCATATTGGCTTT
CGTGCGGCAAATTGTAACCAGGATCGCGTGGAGAATTTCTACGGCTGCGC
AGCTGTCTGGGGATCTGGAGAGTGTCTGAGGACGAGGGAGCGCTTGGTCC
AACGAAGGTGA

Coding sequence (CDS) from alignment at tig00000851_pilon:482430..484040-

>Ggra3292.t1 ID=Ggra3292.t1|Name=Ggra3292.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00000851_pilon:482430..484040- (Gracilaria gracilis GNS1m male)
ATGGTGATCCTCTTTCAGCCAACGGGTATATCCTACTTCAACAGCATGTT
TGACCGCACCATCTTGAACGTTGTCTTCAGTGGATTGCTTGCCTTTCTCA
TTCTGCTCGAGATCGAAAATGTTGCAGATGTGCTCATGTATCGTGCACAT
AACATCAACAAGCGCTCCATAGACCAATACATTCTGTTCTCGCGAGTGTC
TAGCTTGAGGGGCATCTTACAGACGCTTTCCGGATTGGAGTATTCTTCAA
AGGAGATTCGTACCGAGCCGATGCATCATCGAAAGAGATGGAGAGCTCGA
CTACATTGTGCACTGGACGACGGTGCTGATAACCTCGAGGCAGATCGGAG
CTCCGAGAAGAAGGAGAGTGATGATGAGCGCGCTCAAGGTACAACTATTG
TGTCAACCCTCGTCGATACTGAACGATCTTTGTCTGTAACGGATCTCGAA
GAATCTCAGCCATCAGCGGGTCCCACGGAGCTGCGTCGAATTGGAATTCC
TGTACGTGACGGTGTGCCGCGTCCACATGTGCGACTTTTGGGCATGGTTG
TGCCCCTCCTGTTTCGCTTGACATTGCTCACCCTGGAGTTATTAACCATA
TACTTCAGTTCGAACATCTCTGAAGAGGTGAAAGCCGGCCGTTCGTTCAA
TGTACGTCTCAAAGAAGGCAACGCTGTCATCAAAACGTCCCAGGCTGATA
ACTCTCCGTGTCGGGAATTCATCCACCCTGCGAAGGGAGTAGAGCACAAT
GGAAGTGTACTATTGTGTATTGGCAGTGAACATACCCACGAATTCCCGAC
AGAAAATGACACCTTTCTGTACTTCAGTTTTGATCCGAGCCAAAATCAAA
TGGAGTACGTTGTTGGAGATCTGTATGGCAAGGAGATTTCCGTTTATGTG
CGTATGTTCATCAATTTGATTGGTGATGAGGGGGTGGAATTGGGCCCATT
GCGCCCCGATTTACCGGTCGATGACAATCACTCCAAGAAAGTGATTCAGA
GAGTCATGAATCGAGCGATTAGCAGGTTGGGATTTGGTATGAAGATCGAG
CAAATTGAAGAGATTGTCGACGACAGGAATGTCATTCAGTACAAGTATCC
ACGCACTTTTGGCAATACGAGTAAGCTCGCGATTGAACGCGAATTGCTTT
CTGAGTTACACACCTTAAGCTTGGATTTGAACATTACAAAAGAAGGAGAA
GAGGATGCACTTTACGTGTTTAAGAAGGACAGAGGATACTTCCGACACGA
GAATCCGGTCATAGCCATTGTCGGCAAAAACCGTCTCGCGCAAGGTTGGC
TCGTAATTGCGTGGGTGACTTTGCTAATTGTGCGCTTCGTCGCGCAACGG
TTTCTCATTTCATTTGATGAATTGGCGTACCTGGCCTTGAAAACGGTTCA
TGGCGCGGACATATCGGTTGGACCTCTGGCAAATGTTCAGAAGAAGGAGA
GATTGTCTATTGGGAAGTTTTCTGACGGACGTGTGGGGCATATTGGCTTT
CGTGCGGCAAATTGTAACCAGGATCGCGTGGAGAATTTCTACGGCTGCGC
AGCTGTCTGGGGATCTGGAGAGTGTCTGAGGACGAGGGAGCGCTTGGTCC
AACGAAGGTGA