Ggra3284.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3284.t1
Unique NameGgra3284.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:310582..312159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3284Ggra3284Gracilaria gracilis GNS1m malegenetig00000851_pilon 310582..312159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3284.t1Ggra3284.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 310582..312159 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3284.t1.start1Ggra3284.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 310582..310584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3284.t1.CDS1Ggra3284.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 310582..311857 +
Ggra3284.t1.CDS2Ggra3284.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 311918..312017 +
Ggra3284.t1.CDS3Ggra3284.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000851_pilon 312078..312159 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3284.t1.exon1Ggra3284.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 310582..311857 +
Ggra3284.t1.exon2Ggra3284.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 311918..312017 +
Ggra3284.t1.exon3Ggra3284.t1.exon3Gracilaria gracilis GNS1m maleexontig00000851_pilon 312078..312159 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3284.t1.intron1Ggra3284.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 311858..311917 +
Ggra3284.t1.intron2Ggra3284.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000851_pilon 312018..312077 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3284.t1.stop1Ggra3284.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 312157..312159 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3284.t1 ID=Ggra3284.t1|Name=Ggra3284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp
MDKRKVTTGRFGIRRTLLLGPLLLLPLLLTYVTYTALPTLPLTATRLDTP
ADHLLLLDGWERMINVQGAISRLLHVALDANFTLVEPFMYQSKIDLRYSL
PPLFRRRRLKPQPISTFFDSSGLFNTSGYAPYNQFQRRFRTRRTAYIHAV
LFLTWPKQRWITSKDRNFNEKYPLPKPFFWCDSNAKRLPRLLRPNVHRLM
PAVEVGHILCASPTEITNATFFHSLFNTARRHFKHPRLSCEECTSVAIAN
YRKHAIDDYLTRNSTKILRPPSLSLSAQMFDIASTIVRREFGNEPFLAIH
IRTGRAYTQLTQKRNYSAFKEWLPACVDRLLEAAQAKQMSIYVASDLFNE
GWKGGETANRRVRNALHEARSKLQGNSMVHLNVRNERKLVKQDLMGMASA
IDAAVSVSATHFLFAERSNFGRWVGKGQQEDPSWRLRPRISHPRLLYLDW
TIGQSGLSGDAPILFPCAIREREYPGDVVLAHNMS*
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spliced messenger RNA

>Ggra3284.t1 ID=Ggra3284.t1|Name=Ggra3284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000851_pilon:310582..312159+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGCGTAAGGTTACAACCGGTCGCTTTGGGATACGCCGGACGTT
GCTGCTTGGGCCACTGCTGTTGCTTCCACTGTTGCTTACGTATGTTACAT
ACACCGCTCTGCCAACGCTGCCTCTCACAGCTACACGCTTGGACACGCCT
GCCGATCATCTTCTCCTGCTTGACGGGTGGGAACGCATGATCAACGTTCA
GGGCGCCATTAGTCGTCTGTTGCACGTTGCTCTGGATGCCAACTTTACCC
TTGTCGAGCCGTTCATGTATCAATCCAAGATCGACTTGCGCTATTCGCTA
CCACCATTGTTTCGACGACGAAGACTGAAACCCCAACCAATTTCGACCTT
TTTCGACAGTAGCGGTCTCTTCAATACGTCCGGATACGCGCCATACAATC
AGTTTCAACGACGGTTCAGAACACGGCGAACTGCGTATATACACGCCGTG
TTGTTTCTGACGTGGCCGAAACAACGCTGGATCACATCTAAAGATCGCAA
CTTCAACGAAAAGTACCCGCTACCAAAACCATTCTTCTGGTGTGACTCTA
ATGCGAAACGCCTCCCGCGACTCTTAAGGCCCAATGTGCATCGCCTCATG
CCCGCCGTCGAGGTGGGCCATATTCTCTGCGCCAGTCCAACAGAGATCAC
CAACGCCACCTTCTTTCACTCATTGTTCAACACTGCTCGACGGCATTTCA
AACACCCGCGACTATCCTGCGAAGAATGTACCTCGGTCGCGATTGCCAAC
TATCGAAAGCATGCTATAGACGATTACCTGACGCGGAACAGCACCAAAAT
CCTCCGTCCGCCATCTCTCTCGCTGTCTGCACAAATGTTCGACATCGCCT
CAACTATAGTGCGCCGTGAATTTGGTAATGAACCCTTCTTGGCAATTCAC
ATTCGAACGGGCAGAGCGTATACACAGCTGACTCAGAAACGGAATTACTC
TGCATTTAAAGAATGGCTGCCAGCTTGCGTCGATCGTTTACTTGAGGCTG
CGCAGGCCAAGCAAATGTCCATATATGTTGCATCGGACCTGTTCAACGAA
GGTTGGAAGGGCGGAGAAACGGCAAACCGAAGAGTTCGCAACGCCTTGCA
TGAAGCACGATCGAAGCTGCAGGGCAATTCAATGGTACATCTGAACGTCA
GGAATGAACGAAAGCTGGTTAAACAAGACCTTATGGGAATGGCGTCCGCC
ATTGATGCTGCAGTTTCTGTCTCGGCCACTCATTTTCTCTTTGCCGAGCG
GTCTAATTTTGGACGCTGGGTTGGCAAGGGTCAACAAGAGGATCCTTCCT
GGCGACTTAGGCCTCGCATAAGCCACCCAAGGTTGTTGTACCTGGACTGG
ACTATCGGTCAGTCCGGTCTTTCGGGCGACGCGCCTATCCTTTTCCCCTG
CGCCATACGTGAAAGAGAATACCCCGGAGATGTTGTATTAGCTCATAATA
TGAGCTAA
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protein sequence of Ggra3284.t1

>Ggra3284.t1 ID=Ggra3284.t1|Name=Ggra3284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=486bp
MDKRKVTTGRFGIRRTLLLGPLLLLPLLLTYVTYTALPTLPLTATRLDTP
ADHLLLLDGWERMINVQGAISRLLHVALDANFTLVEPFMYQSKIDLRYSL
PPLFRRRRLKPQPISTFFDSSGLFNTSGYAPYNQFQRRFRTRRTAYIHAV
LFLTWPKQRWITSKDRNFNEKYPLPKPFFWCDSNAKRLPRLLRPNVHRLM
PAVEVGHILCASPTEITNATFFHSLFNTARRHFKHPRLSCEECTSVAIAN
YRKHAIDDYLTRNSTKILRPPSLSLSAQMFDIASTIVRREFGNEPFLAIH
IRTGRAYTQLTQKRNYSAFKEWLPACVDRLLEAAQAKQMSIYVASDLFNE
GWKGGETANRRVRNALHEARSKLQGNSMVHLNVRNERKLVKQDLMGMASA
IDAAVSVSATHFLFAERSNFGRWVGKGQQEDPSWRLRPRISHPRLLYLDW
TIGQSGLSGDAPILFPCAIREREYPGDVVLAHNMS*
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mRNA from alignment at tig00000851_pilon:310582..312159+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3284.t1 ID=Ggra3284.t1|Name=Ggra3284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000851_pilon:310582..312159+ (Gracilaria gracilis GNS1m male)
ATGGACAAGCGTAAGGTTACAACCGGTCGCTTTGGGATACGCCGGACGTT
GCTGCTTGGGCCACTGCTGTTGCTTCCACTGTTGCTTACGTATGTTACAT
ACACCGCTCTGCCAACGCTGCCTCTCACAGCTACACGCTTGGACACGCCT
GCCGATCATCTTCTCCTGCTTGACGGGTGGGAACGCATGATCAACGTTCA
GGGCGCCATTAGTCGTCTGTTGCACGTTGCTCTGGATGCCAACTTTACCC
TTGTCGAGCCGTTCATGTATCAATCCAAGATCGACTTGCGCTATTCGCTA
CCACCATTGTTTCGACGACGAAGACTGAAACCCCAACCAATTTCGACCTT
TTTCGACAGTAGCGGTCTCTTCAATACGTCCGGATACGCGCCATACAATC
AGTTTCAACGACGGTTCAGAACACGGCGAACTGCGTATATACACGCCGTG
TTGTTTCTGACGTGGCCGAAACAACGCTGGATCACATCTAAAGATCGCAA
CTTCAACGAAAAGTACCCGCTACCAAAACCATTCTTCTGGTGTGACTCTA
ATGCGAAACGCCTCCCGCGACTCTTAAGGCCCAATGTGCATCGCCTCATG
CCCGCCGTCGAGGTGGGCCATATTCTCTGCGCCAGTCCAACAGAGATCAC
CAACGCCACCTTCTTTCACTCATTGTTCAACACTGCTCGACGGCATTTCA
AACACCCGCGACTATCCTGCGAAGAATGTACCTCGGTCGCGATTGCCAAC
TATCGAAAGCATGCTATAGACGATTACCTGACGCGGAACAGCACCAAAAT
CCTCCGTCCGCCATCTCTCTCGCTGTCTGCACAAATGTTCGACATCGCCT
CAACTATAGTGCGCCGTGAATTTGGTAATGAACCCTTCTTGGCAATTCAC
ATTCGAACGGGCAGAGCGTATACACAGCTGACTCAGAAACGGAATTACTC
TGCATTTAAAGAATGGCTGCCAGCTTGCGTCGATCGTTTACTTGAGGCTG
CGCAGGCCAAGCAAATGTCCATATATGTTGCATCGGACCTGTTCAACGAA
GGTTGGAAGGGCGGAGAAACGGCAAACCGAAGAGTTCGCAACGCCTTGCA
TGAAGCACGATCGAAGCTGCAGGGCAATTCAATGGTACATCTGAACGTCA
GGAATGAACGAAAGCTGGTTAAACAAGACCTTATGGGAATGGCGTCCGCC
ATTGATGCTGCAGTTTCTGTCTCGGCCACTCATTTTCTCTTTGCCGAGCG
GTCTAATTTTGGACGCTGGGTTGGCAGTATGCGACGTTTGCGAGGTCTGG
AATTCGACACAGTGTCATGTCCGTTTTAATTCACAGAGGGTCAACAAGAG
GATCCTTCCTGGCGACTTAGGCCTCGCATAAGCCACCCAAGGTTGTTGTA
CCTGGACTGGACTATCGGTCAGTCCGGTCTTTCGGGGTATGTACAAATCA
TGATTGGAAGTTCTCTACGAAGGTATTTCTACTAATACCCCTCCAGCGAC
GCGCCTATCCTTTTCCCCTGCGCCATACGTGAAAGAGAATACCCCGGAGA
TGTTGTATTAGCTCATAATATGAGCTAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:310582..312159+

>Ggra3284.t1 ID=Ggra3284.t1|Name=Ggra3284.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00000851_pilon:310582..312159+ (Gracilaria gracilis GNS1m male)
ATGGACAAGCGTAAGGTTACAACCGGTCGCTTTGGGATACGCCGGACGTT
GCTGCTTGGGCCACTGCTGTTGCTTCCACTGTTGCTTACGTATGTTACAT
ACACCGCTCTGCCAACGCTGCCTCTCACAGCTACACGCTTGGACACGCCT
GCCGATCATCTTCTCCTGCTTGACGGGTGGGAACGCATGATCAACGTTCA
GGGCGCCATTAGTCGTCTGTTGCACGTTGCTCTGGATGCCAACTTTACCC
TTGTCGAGCCGTTCATGTATCAATCCAAGATCGACTTGCGCTATTCGCTA
CCACCATTGTTTCGACGACGAAGACTGAAACCCCAACCAATTTCGACCTT
TTTCGACAGTAGCGGTCTCTTCAATACGTCCGGATACGCGCCATACAATC
AGTTTCAACGACGGTTCAGAACACGGCGAACTGCGTATATACACGCCGTG
TTGTTTCTGACGTGGCCGAAACAACGCTGGATCACATCTAAAGATCGCAA
CTTCAACGAAAAGTACCCGCTACCAAAACCATTCTTCTGGTGTGACTCTA
ATGCGAAACGCCTCCCGCGACTCTTAAGGCCCAATGTGCATCGCCTCATG
CCCGCCGTCGAGGTGGGCCATATTCTCTGCGCCAGTCCAACAGAGATCAC
CAACGCCACCTTCTTTCACTCATTGTTCAACACTGCTCGACGGCATTTCA
AACACCCGCGACTATCCTGCGAAGAATGTACCTCGGTCGCGATTGCCAAC
TATCGAAAGCATGCTATAGACGATTACCTGACGCGGAACAGCACCAAAAT
CCTCCGTCCGCCATCTCTCTCGCTGTCTGCACAAATGTTCGACATCGCCT
CAACTATAGTGCGCCGTGAATTTGGTAATGAACCCTTCTTGGCAATTCAC
ATTCGAACGGGCAGAGCGTATACACAGCTGACTCAGAAACGGAATTACTC
TGCATTTAAAGAATGGCTGCCAGCTTGCGTCGATCGTTTACTTGAGGCTG
CGCAGGCCAAGCAAATGTCCATATATGTTGCATCGGACCTGTTCAACGAA
GGTTGGAAGGGCGGAGAAACGGCAAACCGAAGAGTTCGCAACGCCTTGCA
TGAAGCACGATCGAAGCTGCAGGGCAATTCAATGGTACATCTGAACGTCA
GGAATGAACGAAAGCTGGTTAAACAAGACCTTATGGGAATGGCGTCCGCC
ATTGATGCTGCAGTTTCTGTCTCGGCCACTCATTTTCTCTTTGCCGAGCG
GTCTAATTTTGGACGCTGGGTTGGCAAGGGTCAACAAGAGGATCCTTCCT
GGCGACTTAGGCCTCGCATAAGCCACCCAAGGTTGTTGTACCTGGACTGG
ACTATCGGTCAGTCCGGTCTTTCGGGCGACGCGCCTATCCTTTTCCCCTG
CGCCATACGTGAAAGAGAATACCCCGGAGATGTTGTATTAGCTCATAATA
TGAGCTAA
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