Ggra3281.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3281.t1
Unique NameGgra3281.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:238229..239703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3281Ggra3281Gracilaria gracilis GNS1m malegenetig00000851_pilon 238229..239703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3281.t1Ggra3281.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 238229..239703 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3281.t1.start1Ggra3281.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 238229..238231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3281.t1.CDS1Ggra3281.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 238229..238891 +
Ggra3281.t1.CDS2Ggra3281.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 238996..239083 +
Ggra3281.t1.CDS3Ggra3281.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000851_pilon 239150..239296 +
Ggra3281.t1.CDS4Ggra3281.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000851_pilon 239438..239703 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3281.t1.exon1Ggra3281.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 238229..238891 +
Ggra3281.t1.exon2Ggra3281.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 238996..239083 +
Ggra3281.t1.exon3Ggra3281.t1.exon3Gracilaria gracilis GNS1m maleexontig00000851_pilon 239150..239296 +
Ggra3281.t1.exon4Ggra3281.t1.exon4Gracilaria gracilis GNS1m maleexontig00000851_pilon 239438..239703 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3281.t1.intron1Ggra3281.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 238892..238995 +
Ggra3281.t1.intron2Ggra3281.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000851_pilon 239084..239149 +
Ggra3281.t1.intron3Ggra3281.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000851_pilon 239297..239437 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3281.t1.stop1Ggra3281.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 239701..239703 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3281.t1 ID=Ggra3281.t1|Name=Ggra3281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MVSRYRVHHREDYSRIRAEGQNRLKNFPHPILKRSDFNLEKDKAIQSALS
ARDTRATDGDGGTKRSVPSVPGWSEETMLMGILDSNTAGFDAIEKRRSGN
GGAVPARQSILDNDEDFLRNNQTIPRLSLSTALRKRVKSLNANMSSMATR
NSKRKIRFLYSSTAVNELLENLLAYVSQHIECKEKKSGSLMDMSSFELLQ
PIPDREGAHLEGKVFNFIALMVPETQKVRQLMLIEYYGVFIEHELQLDSP
VSPKDNAKSFSDVGGEEQGKDKTYWNYHYQKCFFDPSASALHVRKSTGEV
ETLRSPPTQVVDQLESQVVPIVGGTNWRIDGEKDLKKKDMKVEVGVGSLH
IDDMHHFSVSEVSDVRLKSSDDVTYIDPEIDDNSLIT*
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spliced messenger RNA

>Ggra3281.t1 ID=Ggra3281.t1|Name=Ggra3281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000851_pilon:238229..239703+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCTAGGTACAGGGTGCATCATCGAGAGGACTACTCACGAATTCG
AGCAGAGGGGCAGAATCGCTTGAAAAACTTCCCACATCCCATTCTGAAGC
GTTCAGATTTCAACTTAGAAAAAGACAAGGCCATCCAGAGTGCTTTATCG
GCACGAGATACTAGAGCAACGGATGGTGATGGTGGGACCAAAAGATCTGT
ACCATCTGTACCGGGGTGGAGTGAGGAGACGATGCTAATGGGTATCCTGG
ACAGTAATACAGCTGGATTTGACGCTATCGAAAAGAGAAGGTCAGGCAAC
GGTGGTGCAGTACCTGCGCGACAGAGTATTTTGGACAATGATGAGGATTT
CCTCCGCAATAACCAGACCATTCCGCGGCTGTCACTCAGTACAGCTCTTA
GAAAGAGGGTGAAAAGTTTGAATGCCAATATGTCATCCATGGCGACACGT
AATTCCAAACGCAAAATTCGATTTTTATACAGCTCCACGGCTGTAAACGA
ATTGCTGGAGAACCTCTTAGCATATGTATCTCAACATATCGAATGCAAAG
AAAAGAAATCGGGGAGCCTCATGGATATGAGTAGTTTTGAACTTCTCCAA
CCGATTCCCGACCGCGAAGGAGCCCATCTTGAGGGAAAAGTCTTCAATTT
TATAGCTCTCATGGTGCCAGAGACACAGAAAGTTCGCCAGCTAATGCTAA
TCGAATATTATGGTGTATTTATTGAGCATGAACTCCAACTGGACAGTCCG
GTGTCTCCGAAGGACAATGCAAAGTCGTTTTCGGACGTCGGAGGTGAGGA
GCAGGGAAAGGATAAAACGTATTGGAACTACCACTACCAAAAGTGCTTTT
TTGATCCCTCTGCATCGGCGTTACATGTTAGAAAGAGTACAGGGGAAGTC
GAGACACTACGCTCTCCACCGACACAAGTTGTTGATCAATTAGAGTCGCA
GGTTGTCCCCATTGTAGGCGGTACAAATTGGAGAATAGACGGGGAGAAGG
ACCTGAAGAAGAAGGACATGAAGGTGGAAGTGGGCGTGGGATCACTTCAC
ATAGATGATATGCATCATTTCTCAGTGTCTGAAGTCAGTGACGTGAGATT
GAAAAGCAGTGACGACGTCACGTACATCGATCCTGAGATCGATGACAACT
CTTTAATTACATAA
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protein sequence of Ggra3281.t1

>Ggra3281.t1 ID=Ggra3281.t1|Name=Ggra3281.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MVSRYRVHHREDYSRIRAEGQNRLKNFPHPILKRSDFNLEKDKAIQSALS
ARDTRATDGDGGTKRSVPSVPGWSEETMLMGILDSNTAGFDAIEKRRSGN
GGAVPARQSILDNDEDFLRNNQTIPRLSLSTALRKRVKSLNANMSSMATR
NSKRKIRFLYSSTAVNELLENLLAYVSQHIECKEKKSGSLMDMSSFELLQ
PIPDREGAHLEGKVFNFIALMVPETQKVRQLMLIEYYGVFIEHELQLDSP
VSPKDNAKSFSDVGGEEQGKDKTYWNYHYQKCFFDPSASALHVRKSTGEV
ETLRSPPTQVVDQLESQVVPIVGGTNWRIDGEKDLKKKDMKVEVGVGSLH
IDDMHHFSVSEVSDVRLKSSDDVTYIDPEIDDNSLIT*
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mRNA from alignment at tig00000851_pilon:238229..239703+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3281.t1 ID=Ggra3281.t1|Name=Ggra3281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1475bp|location=Sequence derived from alignment at tig00000851_pilon:238229..239703+ (Gracilaria gracilis GNS1m male)
ATGGTTTCTAGGTACAGGGTGCATCATCGAGAGGACTACTCACGAATTCG
AGCAGAGGGGCAGAATCGCTTGAAAAACTTCCCACATCCCATTCTGAAGC
GTTCAGATTTCAACTTAGAAAAAGACAAGGCCATCCAGAGTGCTTTATCG
GCACGAGATACTAGAGCAACGGATGGTGATGGTGGGACCAAAAGATCTGT
ACCATCTGTACCGGGGTGGAGTGAGGAGACGATGCTAATGGGTATCCTGG
ACAGTAATACAGCTGGATTTGACGCTATCGAAAAGAGAAGGTCAGGCAAC
GGTGGTGCAGTACCTGCGCGACAGAGTATTTTGGACAATGATGAGGATTT
CCTCCGCAATAACCAGACCATTCCGCGGCTGTCACTCAGTACAGCTCTTA
GAAAGAGGGTGAAAAGTTTGAATGCCAATATGTCATCCATGGCGACACGT
AATTCCAAACGCAAAATTCGATTTTTATACAGCTCCACGGCTGTAAACGA
ATTGCTGGAGAACCTCTTAGCATATGTATCTCAACATATCGAATGCAAAG
AAAAGAAATCGGGGAGCCTCATGGATATGAGTAGTTTTGAACTTCTCCAA
CCGATTCCCGACCGCGAAGGAGCCCATCTTGAGGGAAAAGTCTTCAATTT
TATAGCTCTCATGGTATCCATTTCCCACGCAAAGGGATTCCTGTATGGAA
TCCATCACAATATATATTTGAAACTGCGAAAGAAGGGCAATGGACGTTTT
ATTAATGGTCGTTTTAGGTGCCAGAGACACAGAAAGTTCGCCAGCTAATG
CTAATCGAATATTATGGTGTATTTATTGAGCATGAACTCCAACTGGACAG
TCCGGGTTAATATGAATAACACCCACGCCTCTGCTCAGGTTTCTGATTCT
GACAGTAAGAAGCGCTATCAGTGTCTCCGAAGGACAATGCAAAGTCGTTT
TCGGACGTCGGAGGTGAGGAGCAGGGAAAGGATAAAACGTATTGGAACTA
CCACTACCAAAAGTGCTTTTTTGATCCCTCTGCATCGGCGTTACATGTTA
GAAAGAGTACAGGGGAAGGTATGTTTCTTTTTCCGGATGGAGTATCTGTG
CAAGAAAATGTACTACATCCTTCCTCTCGTTCTACACCTGACACTCACGC
CGTATCTATACTGCCAGTACCTACCCAAACTAAAATGGTACAGCCCTAAG
AACATTCAGTCGAGACACTACGCTCTCCACCGACACAAGTTGTTGATCAA
TTAGAGTCGCAGGTTGTCCCCATTGTAGGCGGTACAAATTGGAGAATAGA
CGGGGAGAAGGACCTGAAGAAGAAGGACATGAAGGTGGAAGTGGGCGTGG
GATCACTTCACATAGATGATATGCATCATTTCTCAGTGTCTGAAGTCAGT
GACGTGAGATTGAAAAGCAGTGACGACGTCACGTACATCGATCCTGAGAT
CGATGACAACTCTTTAATTACATAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:238229..239703+

>Ggra3281.t1 ID=Ggra3281.t1|Name=Ggra3281.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000851_pilon:238229..239703+ (Gracilaria gracilis GNS1m male)
ATGGTTTCTAGGTACAGGGTGCATCATCGAGAGGACTACTCACGAATTCG
AGCAGAGGGGCAGAATCGCTTGAAAAACTTCCCACATCCCATTCTGAAGC
GTTCAGATTTCAACTTAGAAAAAGACAAGGCCATCCAGAGTGCTTTATCG
GCACGAGATACTAGAGCAACGGATGGTGATGGTGGGACCAAAAGATCTGT
ACCATCTGTACCGGGGTGGAGTGAGGAGACGATGCTAATGGGTATCCTGG
ACAGTAATACAGCTGGATTTGACGCTATCGAAAAGAGAAGGTCAGGCAAC
GGTGGTGCAGTACCTGCGCGACAGAGTATTTTGGACAATGATGAGGATTT
CCTCCGCAATAACCAGACCATTCCGCGGCTGTCACTCAGTACAGCTCTTA
GAAAGAGGGTGAAAAGTTTGAATGCCAATATGTCATCCATGGCGACACGT
AATTCCAAACGCAAAATTCGATTTTTATACAGCTCCACGGCTGTAAACGA
ATTGCTGGAGAACCTCTTAGCATATGTATCTCAACATATCGAATGCAAAG
AAAAGAAATCGGGGAGCCTCATGGATATGAGTAGTTTTGAACTTCTCCAA
CCGATTCCCGACCGCGAAGGAGCCCATCTTGAGGGAAAAGTCTTCAATTT
TATAGCTCTCATGGTGCCAGAGACACAGAAAGTTCGCCAGCTAATGCTAA
TCGAATATTATGGTGTATTTATTGAGCATGAACTCCAACTGGACAGTCCG
GTGTCTCCGAAGGACAATGCAAAGTCGTTTTCGGACGTCGGAGGTGAGGA
GCAGGGAAAGGATAAAACGTATTGGAACTACCACTACCAAAAGTGCTTTT
TTGATCCCTCTGCATCGGCGTTACATGTTAGAAAGAGTACAGGGGAAGTC
GAGACACTACGCTCTCCACCGACACAAGTTGTTGATCAATTAGAGTCGCA
GGTTGTCCCCATTGTAGGCGGTACAAATTGGAGAATAGACGGGGAGAAGG
ACCTGAAGAAGAAGGACATGAAGGTGGAAGTGGGCGTGGGATCACTTCAC
ATAGATGATATGCATCATTTCTCAGTGTCTGAAGTCAGTGACGTGAGATT
GAAAAGCAGTGACGACGTCACGTACATCGATCCTGAGATCGATGACAACT
CTTTAATTACATAA
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