Ggra3280.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3280.t1
Unique Name	Ggra3280.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:222625..226852 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3280	Ggra3280	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 222625..226852 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3280.t1	Ggra3280.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 222625..226852 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3280.t1.stop1	Ggra3280.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 222625..222627 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3280.t1.CDS1	Ggra3280.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 222625..223121 -
Ggra3280.t1.CDS2	Ggra3280.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 225937..226852 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3280.t1.exon1	Ggra3280.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 222625..223121 -
Ggra3280.t1.exon2	Ggra3280.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 225937..226852 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3280.t1.intron1	Ggra3280.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000851_pilon 223122..225936 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3280.t1.start1	Ggra3280.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 226850..226852 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:222625..226852-
coding sequence from alignment at tig00000851_pilon:222625..226852-

mRNA sequence

>Ggra3280.t1 ID=Ggra3280.t1|Name=Ggra3280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MSTNSSKKRYPVRLFFAISNAAQSLEDEVNSAESVVPSETRGEHQTASDH
QFTVSRKDWRLSLRFVSEDRTKPPPLFHNALALVANKWSSNHSVFNLDNG
SDGIIERSKAAIENVEVNILSSEDECATLRENNLRPSVYELFSELQLPCL
VGILPAITNRHRRVRLVREIDIDLLMSVIVLREGETSQWQRDYLEVLGAW
DAELHSTPESLPDCFQTPLPEDVCARFWPGEPLSNLESRESESPTLLAAY
NGFRKQTVHALGHQCFGFGKQHFVRGLSSGYWWRNQNGFVAEYIGMQKEG
LDIAIDRENWYKNAFDALQALTFLWVGVFGLLKLTSDDPSIIRHSVYGYQ
IIRGVDDIRATVRVDMCKLALINSTQRKREWLTPADLCFATPKCTGDLRI
PGGLPASQAGKEGLLISENVAIYLKRGKEFWVRDGQIDKSSELTAGKLTQ
AMPPNVKVEPDFAVTGTSYC*

spliced messenger RNA

>Ggra3280.t1 ID=Ggra3280.t1|Name=Ggra3280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000851_pilon:222625..226852- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCAACTCTAGCAAGAAGCGGTACCCCGTGCGCTTGTTTTTTGC
AATATCTAATGCCGCTCAAAGTTTGGAAGATGAAGTCAACTCAGCAGAAT
CTGTCGTGCCTTCTGAAACTCGGGGTGAACATCAGACCGCATCTGACCAT
CAATTCACAGTGTCAAGAAAAGATTGGCGACTGAGTCTTCGATTCGTTTC
AGAAGATCGTACTAAACCACCCCCGCTTTTTCATAATGCGCTCGCCTTAG
TCGCGAATAAGTGGAGCTCGAATCATTCTGTTTTCAACTTGGACAACGGC
TCAGATGGCATTATTGAAAGAAGTAAAGCTGCTATAGAGAACGTAGAAGT
GAACATCTTGAGTTCCGAGGATGAATGTGCTACGCTGAGGGAAAATAACC
TTCGCCCGAGTGTTTACGAACTATTTTCTGAACTACAGTTGCCATGTTTG
GTTGGGATTCTTCCGGCCATTACTAATCGGCATCGGCGTGTTCGGCTTGT
TAGGGAGATCGACATTGATCTGCTCATGTCAGTAATCGTACTCAGAGAAG
GTGAAACGTCCCAATGGCAACGTGACTACTTGGAGGTATTGGGCGCCTGG
GACGCTGAACTACACTCCACTCCGGAGAGTCTTCCTGATTGCTTTCAAAC
GCCCCTTCCAGAAGACGTCTGTGCCAGGTTCTGGCCAGGAGAACCATTGT
CCAACTTAGAGTCCCGAGAGTCAGAGTCACCCACTTTACTGGCAGCGTAT
AACGGTTTCAGAAAGCAAACCGTCCATGCACTTGGACATCAATGCTTTGG
CTTTGGGAAACAGCATTTCGTGAGAGGGCTCAGTAGCGGTTACTGGTGGC
GAAATCAAAATGGATTCGTTGCAGAATATATTGGCATGCAGAAAGAAGGG
CTTGACATTGCCATTGATCGGGAAAATTGGTATAAGAATGCGTTTGACGC
TCTACAAGCTCTCACGTTTCTTTGGGTGGGTGTGTTTGGACTTCTGAAAT
TGACAAGCGACGATCCGAGTATTATTCGACACTCCGTGTATGGCTATCAG
ATTATTCGGGGCGTGGACGATATCAGAGCCACTGTCCGCGTTGATATGTG
CAAGCTTGCTTTGATCAACAGCACACAGCGTAAGAGAGAGTGGCTCACCC
CGGCGGATCTATGTTTTGCCACACCGAAATGTACAGGGGATCTAAGAATC
CCCGGAGGCCTTCCAGCTTCACAGGCAGGTAAAGAAGGTTTGTTGATCTC
TGAAAATGTTGCTATCTACTTAAAACGTGGAAAGGAATTCTGGGTGCGAG
ACGGACAAATCGACAAGAGCAGTGAGCTAACTGCAGGGAAGCTCACGCAG
GCTATGCCACCGAATGTAAAGGTAGAGCCGGATTTTGCTGTGACGGGGAC
CTCTTATTGTTGA

protein sequence of Ggra3280.t1

>Ggra3280.t1 ID=Ggra3280.t1|Name=Ggra3280.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MSTNSSKKRYPVRLFFAISNAAQSLEDEVNSAESVVPSETRGEHQTASDH
QFTVSRKDWRLSLRFVSEDRTKPPPLFHNALALVANKWSSNHSVFNLDNG
SDGIIERSKAAIENVEVNILSSEDECATLRENNLRPSVYELFSELQLPCL
VGILPAITNRHRRVRLVREIDIDLLMSVIVLREGETSQWQRDYLEVLGAW
DAELHSTPESLPDCFQTPLPEDVCARFWPGEPLSNLESRESESPTLLAAY
NGFRKQTVHALGHQCFGFGKQHFVRGLSSGYWWRNQNGFVAEYIGMQKEG
LDIAIDRENWYKNAFDALQALTFLWVGVFGLLKLTSDDPSIIRHSVYGYQ
IIRGVDDIRATVRVDMCKLALINSTQRKREWLTPADLCFATPKCTGDLRI
PGGLPASQAGKEGLLISENVAIYLKRGKEFWVRDGQIDKSSELTAGKLTQ
AMPPNVKVEPDFAVTGTSYC*

mRNA from alignment at tig00000851_pilon:222625..226852-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3280.t1 ID=Ggra3280.t1|Name=Ggra3280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4228bp|location=Sequence derived from alignment at tig00000851_pilon:222625..226852- (Gracilaria gracilis GNS1m male)
ATGTCTACCAACTCTAGCAAGAAGCGGTACCCCGTGCGCTTGTTTTTTGC
AATATCTAATGCCGCTCAAAGTTTGGAAGATGAAGTCAACTCAGCAGAAT
CTGTCGTGCCTTCTGAAACTCGGGGTGAACATCAGACCGCATCTGACCAT
CAATTCACAGTGTCAAGAAAAGATTGGCGACTGAGTCTTCGATTCGTTTC
AGAAGATCGTACTAAACCACCCCCGCTTTTTCATAATGCGCTCGCCTTAG
TCGCGAATAAGTGGAGCTCGAATCATTCTGTTTTCAACTTGGACAACGGC
TCAGATGGCATTATTGAAAGAAGTAAAGCTGCTATAGAGAACGTAGAAGT
GAACATCTTGAGTTCCGAGGATGAATGTGCTACGCTGAGGGAAAATAACC
TTCGCCCGAGTGTTTACGAACTATTTTCTGAACTACAGTTGCCATGTTTG
GTTGGGATTCTTCCGGCCATTACTAATCGGCATCGGCGTGTTCGGCTTGT
TAGGGAGATCGACATTGATCTGCTCATGTCAGTAATCGTACTCAGAGAAG
GTGAAACGTCCCAATGGCAACGTGACTACTTGGAGGTATTGGGCGCCTGG
GACGCTGAACTACACTCCACTCCGGAGAGTCTTCCTGATTGCTTTCAAAC
GCCCCTTCCAGAAGACGTCTGTGCCAGGTTCTGGCCAGGAGAACCATTGT
CCAACTTAGAGTCCCGAGAGTCAGAGTCACCCACTTTACTGGCAGCGTAT
AACGGTTTCAGAAAGCAAACCGTCCATGCACTTGGACATCAATGCTTTGG
CTTTGGGAAACAGCATTTCGTGAGAGGGCTCAGTAGCGGTTACTGGTGGC
GAAATCAAAATGGATTCGTTGCAGAATATATTGGCATGCAGAAAGAAGGG
CTTGACATTGCCATTGGTACCTGGAATACTGTGGTTTACAGTGCTGTAGT
CGGACCCGCTGAGCAGCCGTCGCCGAATAGATCTTTACAACCAATTCTCT
TTGACTACGATAACATTATGTTTATAGAAAGAAATCAAACTATCCCTATA
CATAAACGTTTAAACGCATTTGCAGAGTTTACTTGATATTTGAAAAGACA
ACAAATTATATCAACCCATCTTCTTTTTTTGTAGAGATGACAAGAAAAAG
CGCAAAGATCAATCATTATAGGAACTCATCCCAAAAAGTTTGGGTTATCC
GTATCTTCATCTGAACCAATTTCGTGGAGTGTGGCTTTCATTCGACGCAC
CCTTTTTTCTCTATACCTTTTCTGAGCCATCTTTCTTTTTCCGAGCATTT
CCTCCCCAATTTTAAACAAATGATTCCTAATTTGGCTATAAAACTGACCA
TCTCCAGCTCCCAATAAGTGCCACATAATATGGGCGTTTGTCGATGACAA
ACAAAGTAGAAATATTTCATTATAATACTTCTCACCCCATTTGTATTTTG
AACCCAAAACATTCCATAATTTTGTTAAATGGCCAAAATAACTTTCTGCA
ATAACCCTGTCGGACGCAATATTCTTATTCTTTTCCTCTTCGGAAGTTGA
AAGCAGCCCTAGCGGTGGTTTTTTAGGATGTACTACCCGTGCATGTTCCT
TCGCTCCTTGATACCCTTTATCCATTAAAACGCCCCATGAATCAGGATAT
TTATCCAATAGTTCGCAGGCATCCAAATTATAATTCAGGCCTTCATTATC
CCTTTTTTCAAAGCCGTGTAATGCACATCAATATTTGCATAAAATATATC
AATATCAGCCGTAGACCCTGGTACATGTTCAGAACAATTTATAGCCTGCC
CATTTGGTAACATTGATACTTCAGTCTTGAATCCATAAAGTTTGTGTTTG
CCGCTATAATACTTTTTGCCTTTGCCCATGCTCCCACTTGGCCTATAAGA
CTGCTGAAAGATGACGTCCGTCGCATACCGACAGTACTTGAAGTGCCGAA
AGCCCAAATTCTGGCGAAGAATTTTTTTCATCGGCCAACGGCCGTGATTT
CCGTCAACATAATGATTATAAACCTCAACAAAAATACAGGAAAAAAATTT
CAAAACCAATCGTTCGAAAGTGTTACCATTAATTTTGAACATATTACCTA
AAAACTCTCAAGTGCCACCGTGTTTGAGCACTGTTAAAACCATGAACAAA
ACATCCTTATCTTTAAATGCATAGCGGCGTCCTCTTCCTATATTCTATAT
TCGTGCCAGAAGAGGCGCTACAATATTCCAGATTAAATGGAATGCACGAC
TAGAAAAATTCGTCATAAGTATAATAATCTGGGAACCATTTCGTAAATAA
AATACATCATAGATAGGACGGTTGGAATCACATTTTTCGTCAGAATCTTA
TTGTATCTTTTAAGTAGTGAATTGCTGCATTTGCGCTACGCGGCCAAGTT
GCGCTTCAGCGACGGCCTCAATGACGTTTTCGGCATGAGATTCAGAAATA
TCTGCCATATCCAGACTGGAAACGATTAATGTCGTTTTTAGAAAGGTTGA
AGGTGTTTTGGGAAGATTGGTGATGTGGACAACGCACTATGATCTACAAA
AGTACTAACACAACGTTTTTATACCTGTCTTTCAATATCTACATTGTTTT
AGCTTTGTTGTCAAATCTTGCACTGACGTCAACGTCTTTAGGCAAAATTG
TGGTGTCTACGTCACAGTAGTTTTAGTTACGTAGACACTTAGTGAATTAT
GGTAGATGTCCTCCTTTTGGCTTTATTCTTTTTTGTTGTCTAGTATGTTA
AGTTATGTCCATATCTTCTAGTGAATCTCGCAGTTCGCGATCTTCGCGTA
GTGCAACAGATTCGAATCCGCCGGATCACAACAGAAGGGAAGCCGAAATA
GAGTTCGGAGATGTGATTCTTAGATTGTAACCGATTCTTGCGTTCGCGGC
TCGCGGCGTGTATAGGGTGGGAAGAGTTGCTTTGTTCGTTGAACATGGAC
AGGAGGCCTGGCACAACAACGAAACCCGTACCGACGGTACCCTTTCATTC
GCACCATCTTTCGGTAAGTGTGACATTTTCTATCCAAGGGTGTTAGTTCA
TGAGTTGACCCTTTGTAGTAGTTGGTGCCCATCTGGAGTCACCACCCGGC
AACTACCTAGATTTCACCATACCCCTGAAGCTTTTTCATCACTCATTACG
CCTTCCTTTACAAGTACTAACCTACAAATGCCGATACCAACACATGAGAT
CCTGTCACCGTAATGGTCTGCAGTGCGAGGCATCTTGAGGCTCTATTTTG
TATCTCTGGCATTCTATCTGTCCTATCTTCGTCTTCTTACAATGATAGAT
CCGTCTGTCACGCTCCTTCGTCGATTGGTACCAAATTTGAAGCGTTTTAT
AATTCGCTTACTGTTTCCTCGGATGAACTGGCATGTTGCTGAAATTCGCC
CGTACGACTGTGTTCTAGTAATTCGTGATGGCCAGTTTGTATTGGCTCAA
TCGCCCCAAACTATCCTCAGAATTGATGATGATATCTCTTCCACTTCTCC
TGAAGAAAGAAATCTCATTCCTCCTGTAAGAATATTGTTGTATTTCATGA
TTTTTTACGAGATTGAACTGACAAAGAAGATCGGGTGTGCGAAGTAATGG
ATCAGAAAAGTTAAGTATGATCCTGAAGGTGGGAGAGTACGACTTCACCC
CCGCAAAAACATGGTTCTGGAGAATATACGCGGTATGCTCGGCTATTGCT
TCGATGTTTGTGTATTTCCGGAACCCCGCAGATCGGGAAAATTGGTATAA
GAATGCGTTTGACGCTCTACAAGCTCTCACGTTTCTTTGGGTGGGTGTGT
TTGGACTTCTGAAATTGACAAGCGACGATCCGAGTATTATTCGACACTCC
GTGTATGGCTATCAGATTATTCGGGGCGTGGACGATATCAGAGCCACTGT
CCGCGTTGATATGTGCAAGCTTGCTTTGATCAACAGCACACAGCGTAAGA
GAGAGTGGCTCACCCCGGCGGATCTATGTTTTGCCACACCGAAATGTACA
GGGGATCTAAGAATCCCCGGAGGCCTTCCAGCTTCACAGGCAGGTAAAGA
AGGTTTGTTGATCTCTGAAAATGTTGCTATCTACTTAAAACGTGGAAAGG
AATTCTGGGTGCGAGACGGACAAATCGACAAGAGCAGTGAGCTAACTGCA
GGGAAGCTCACGCAGGCTATGCCACCGAATGTAAAGGTAGAGCCGGATTT
TGCTGTGACGGGGACCTCTTATTGTTGA

Coding sequence (CDS) from alignment at tig00000851_pilon:222625..226852-

>Ggra3280.t1 ID=Ggra3280.t1|Name=Ggra3280.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000851_pilon:222625..226852- (Gracilaria gracilis GNS1m male)
ATGTCTACCAACTCTAGCAAGAAGCGGTACCCCGTGCGCTTGTTTTTTGC
AATATCTAATGCCGCTCAAAGTTTGGAAGATGAAGTCAACTCAGCAGAAT
CTGTCGTGCCTTCTGAAACTCGGGGTGAACATCAGACCGCATCTGACCAT
CAATTCACAGTGTCAAGAAAAGATTGGCGACTGAGTCTTCGATTCGTTTC
AGAAGATCGTACTAAACCACCCCCGCTTTTTCATAATGCGCTCGCCTTAG
TCGCGAATAAGTGGAGCTCGAATCATTCTGTTTTCAACTTGGACAACGGC
TCAGATGGCATTATTGAAAGAAGTAAAGCTGCTATAGAGAACGTAGAAGT
GAACATCTTGAGTTCCGAGGATGAATGTGCTACGCTGAGGGAAAATAACC
TTCGCCCGAGTGTTTACGAACTATTTTCTGAACTACAGTTGCCATGTTTG
GTTGGGATTCTTCCGGCCATTACTAATCGGCATCGGCGTGTTCGGCTTGT
TAGGGAGATCGACATTGATCTGCTCATGTCAGTAATCGTACTCAGAGAAG
GTGAAACGTCCCAATGGCAACGTGACTACTTGGAGGTATTGGGCGCCTGG
GACGCTGAACTACACTCCACTCCGGAGAGTCTTCCTGATTGCTTTCAAAC
GCCCCTTCCAGAAGACGTCTGTGCCAGGTTCTGGCCAGGAGAACCATTGT
CCAACTTAGAGTCCCGAGAGTCAGAGTCACCCACTTTACTGGCAGCGTAT
AACGGTTTCAGAAAGCAAACCGTCCATGCACTTGGACATCAATGCTTTGG
CTTTGGGAAACAGCATTTCGTGAGAGGGCTCAGTAGCGGTTACTGGTGGC
GAAATCAAAATGGATTCGTTGCAGAATATATTGGCATGCAGAAAGAAGGG
CTTGACATTGCCATTGATCGGGAAAATTGGTATAAGAATGCGTTTGACGC
TCTACAAGCTCTCACGTTTCTTTGGGTGGGTGTGTTTGGACTTCTGAAAT
TGACAAGCGACGATCCGAGTATTATTCGACACTCCGTGTATGGCTATCAG
ATTATTCGGGGCGTGGACGATATCAGAGCCACTGTCCGCGTTGATATGTG
CAAGCTTGCTTTGATCAACAGCACACAGCGTAAGAGAGAGTGGCTCACCC
CGGCGGATCTATGTTTTGCCACACCGAAATGTACAGGGGATCTAAGAATC
CCCGGAGGCCTTCCAGCTTCACAGGCAGGTAAAGAAGGTTTGTTGATCTC
TGAAAATGTTGCTATCTACTTAAAACGTGGAAAGGAATTCTGGGTGCGAG
ACGGACAAATCGACAAGAGCAGTGAGCTAACTGCAGGGAAGCTCACGCAG
GCTATGCCACCGAATGTAAAGGTAGAGCCGGATTTTGCTGTGACGGGGAC
CTCTTATTGTTGA