Ggra3274.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3274.t1
Unique NameGgra3274.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:191715..192392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102129.Lepto7375DRAFT_1292
PFAMsAhpC-TSA
Max annot lvl1117|Cyanobacteria
Evalue3.32e-14
EggNOG OGsCOG1225@1|root,COG1225@2|Bacteria,1G3WF@1117|Cyanobacteria,1HAID@1150|Oscillatoriales
DescriptionPFAM AhpC TSA family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3274Ggra3274Gracilaria gracilis GNS1m malegenetig00000851_pilon 191715..192392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3274.t1Ggra3274.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 191715..192392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3274.t1.start1Ggra3274.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 191715..191717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3274.t1.CDS1Ggra3274.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 191715..191962 +
Ggra3274.t1.CDS2Ggra3274.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 192254..192392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3274.t1.exon1Ggra3274.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 191715..191962 +
Ggra3274.t1.exon2Ggra3274.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 192254..192392 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3274.t1.intron1Ggra3274.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 191963..192253 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3274.t1.stop1Ggra3274.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 192390..192392 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3274.t1 ID=Ggra3274.t1|Name=Ggra3274.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MTVSTAPSLAPQLQAFKEKFLGSASPEMVATVSRTSAELEEANPINPLKV
GDRAPDFTLPNATGKQVTLSSLLEKHSAVVMTWMARLPAPATYVIDKERT
IKYVFADLDYTKRAEPSEVMEVLKTLAQ*
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spliced messenger RNA

>Ggra3274.t1 ID=Ggra3274.t1|Name=Ggra3274.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000851_pilon:191715..192392+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTCTCTACCGCACCGTCGCTCGCCCCGCAGCTCCAGGCCTTCAA
GGAAAAGTTCCTGGGTTCAGCGTCACCAGAGATGGTGGCCACCGTTTCCA
GGACGTCGGCCGAGCTGGAGGAAGCGAACCCGATCAACCCGCTCAAGGTC
GGCGATCGCGCGCCGGACTTCACGCTGCCGAACGCCACCGGCAAGCAGGT
GACGCTCTCCTCGCTGCTCGAGAAGCATTCCGCCGTAGTGATGACGTGgA
TGGCGCGTCTGCCAGCACCGGCTACGTATGTGATTGACAAGGAGCGTACC
ATCAAGTATGTCTTCGCTGATCTGGACTACACGAAGAGAGCTGAGCCGTC
GGAGGTAATGGAGGTGCTCAAGACTCTTGCTCAGTAA
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protein sequence of Ggra3274.t1

>Ggra3274.t1 ID=Ggra3274.t1|Name=Ggra3274.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MTVSTAPSLAPQLQAFKEKFLGSASPEMVATVSRTSAELEEANPINPLKV
GDRAPDFTLPNATGKQVTLSSLLEKHSAVVMTWMARLPAPATYVIDKERT
IKYVFADLDYTKRAEPSEVMEVLKTLAQ*
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mRNA from alignment at tig00000851_pilon:191715..192392+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3274.t1 ID=Ggra3274.t1|Name=Ggra3274.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000851_pilon:191715..192392+ (Gracilaria gracilis GNS1m male)
ATGACTGTCTCTACCGCACCGTCGCTCGCCCCGCAGCTCCAGGCCTTCAA
GGAAAAGTTCCTGGGTTCAGCGTCACCAGAGATGGTGGCCACCGTTTCCA
GGACGTCGGCCGAGCTGGAGGAAGCGAACCCGATCAACCCGCTCAAGGTC
GGCGATCGCGCGCCGGACTTCACGCTGCCGAACGCCACCGGCAAGCAGGT
GACGCTCTCCTCGCTGCTCGAGAAGCATTCCGCCGTAGTGATGACGTGGT
ATCGTGGAGGgtggtgcccgtactgcaatctggcgctgcgcgccttcacg
cagctcaacggcgagattgaagccagcggcgccaagttggtggcgttgac
gccggagacggctgacgagagcctttccacttcggagaagaacgagctga
atttcgaggtgctgtcagatgacggctcgactgttgccgagaagttcggc
gttgtgttcacagttcccgacgatatcaagaccttgtacaagggattcct
cgttgacctcgataacaagaacggtaacgggggcaagaggATGGCGCGTC
TGCCAGCACCGGCTACGTATGTGATTGACAAGGAGCGTACCATCAAGTAT
GTCTTCGCTGATCTGGACTACACGAAGAGAGCTGAGCCGTCGGAGGTAAT
GGAGGTGCTCAAGACTCTTGCTCAGTAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:191715..192392+

>Ggra3274.t1 ID=Ggra3274.t1|Name=Ggra3274.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000851_pilon:191715..192392+ (Gracilaria gracilis GNS1m male)
ATGACTGTCTCTACCGCACCGTCGCTCGCCCCGCAGCTCCAGGCCTTCAA
GGAAAAGTTCCTGGGTTCAGCGTCACCAGAGATGGTGGCCACCGTTTCCA
GGACGTCGGCCGAGCTGGAGGAAGCGAACCCGATCAACCCGCTCAAGGTC
GGCGATCGCGCGCCGGACTTCACGCTGCCGAACGCCACCGGCAAGCAGGT
GACGCTCTCCTCGCTGCTCGAGAAGCATTCCGCCGTAGTGATGACGTGgA
TGGCGCGTCTGCCAGCACCGGCTACGTATGTGATTGACAAGGAGCGTACC
ATCAAGTATGTCTTCGCTGATCTGGACTACACGAAGAGAGCTGAGCCGTC
GGAGGTAATGGAGGTGCTCAAGACTCTTGCTCAGTAA
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