Ggra3273.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3273.t1
Unique NameGgra3273.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:190045..190572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3273Ggra3273Gracilaria gracilis GNS1m malegenetig00000851_pilon 190045..190572 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3273.t1.start1Ggra3273.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 190045..190047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3273.t1.CDS1Ggra3273.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 190045..190572 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3273.t1.exon1Ggra3273.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 190045..190572 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3273.t1.stop1Ggra3273.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 190570..190572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3273.t1Ggra3273.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 190045..190572 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3273.t1 ID=Ggra3273.t1|Name=Ggra3273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MKTILQLKLFVALLFSAYASGMPSPDACAVAFSECAFRFSGSNMLQAFPL
GVADMPFTPQIVSRTPGERIGILNSNGVEPQFINSAGVATDITDFGNGFT
PTQFKPFAIPERIGSGIGHETFQGNKALASGQCVRVFFTSFQKLVSFGPP
VVTTNINLTPQEAVRMKICVVFRTT*
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spliced messenger RNA

>Ggra3273.t1 ID=Ggra3273.t1|Name=Ggra3273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000851_pilon:190045..190572+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTATCCTTCAACTCAAGTTGTTTGTCGCGCTTCTATTTTCCGC
CTATGCCAGTGGCATGCCTTCACCGGACGCTTGTGCGGTCGCTTTCTCTG
AGTGTGCCTTCCGCTTCTCGGGATCAAATATGCTTCAGGCTTTCCCTCTT
GGAGTTGCAGATATGCCCTTCACACCGCAGATCGTTTCACGTACTCCCGG
GGAACGCATTGGCATCCTTAACTCGAATGGGGTGGAACCACAATTTATTA
ATTCCGCAGGGGTCGCCACAGACATTACGGACTTCGGAAACGGATTTACG
CCAACTCAGTTCAAACCGTTCGCCATCCCGGAACGCATTGGATCTGGAAT
AGGCCATGAAACATTCCAAGGAAACAAGGCGTTAGCCTCCGGCCAGTGCG
TCCGCGTGTTCTTCACTTCGTTCCAGAAGCTGGTGAGTTTTGGCCCGCCT
GTGGTTACGACCAACATCAATCTGACGCCGCAGGAGGCAGTGAGGATGAA
GATCTGCGTTGTATTCCGTACGACGTGA
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protein sequence of Ggra3273.t1

>Ggra3273.t1 ID=Ggra3273.t1|Name=Ggra3273.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MKTILQLKLFVALLFSAYASGMPSPDACAVAFSECAFRFSGSNMLQAFPL
GVADMPFTPQIVSRTPGERIGILNSNGVEPQFINSAGVATDITDFGNGFT
PTQFKPFAIPERIGSGIGHETFQGNKALASGQCVRVFFTSFQKLVSFGPP
VVTTNINLTPQEAVRMKICVVFRTT*
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mRNA from alignment at tig00000851_pilon:190045..190572+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3273.t1 ID=Ggra3273.t1|Name=Ggra3273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000851_pilon:190045..190572+ (Gracilaria gracilis GNS1m male)
ATGAAGACTATCCTTCAACTCAAGTTGTTTGTCGCGCTTCTATTTTCCGC
CTATGCCAGTGGCATGCCTTCACCGGACGCTTGTGCGGTCGCTTTCTCTG
AGTGTGCCTTCCGCTTCTCGGGATCAAATATGCTTCAGGCTTTCCCTCTT
GGAGTTGCAGATATGCCCTTCACACCGCAGATCGTTTCACGTACTCCCGG
GGAACGCATTGGCATCCTTAACTCGAATGGGGTGGAACCACAATTTATTA
ATTCCGCAGGGGTCGCCACAGACATTACGGACTTCGGAAACGGATTTACG
CCAACTCAGTTCAAACCGTTCGCCATCCCGGAACGCATTGGATCTGGAAT
AGGCCATGAAACATTCCAAGGAAACAAGGCGTTAGCCTCCGGCCAGTGCG
TCCGCGTGTTCTTCACTTCGTTCCAGAAGCTGGTGAGTTTTGGCCCGCCT
GTGGTTACGACCAACATCAATCTGACGCCGCAGGAGGCAGTGAGGATGAA
GATCTGCGTTGTATTCCGTACGACGTGA
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Coding sequence (CDS) from alignment at tig00000851_pilon:190045..190572+

>Ggra3273.t1 ID=Ggra3273.t1|Name=Ggra3273.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000851_pilon:190045..190572+ (Gracilaria gracilis GNS1m male)
ATGAAGACTATCCTTCAACTCAAGTTGTTTGTCGCGCTTCTATTTTCCGC
CTATGCCAGTGGCATGCCTTCACCGGACGCTTGTGCGGTCGCTTTCTCTG
AGTGTGCCTTCCGCTTCTCGGGATCAAATATGCTTCAGGCTTTCCCTCTT
GGAGTTGCAGATATGCCCTTCACACCGCAGATCGTTTCACGTACTCCCGG
GGAACGCATTGGCATCCTTAACTCGAATGGGGTGGAACCACAATTTATTA
ATTCCGCAGGGGTCGCCACAGACATTACGGACTTCGGAAACGGATTTACG
CCAACTCAGTTCAAACCGTTCGCCATCCCGGAACGCATTGGATCTGGAAT
AGGCCATGAAACATTCCAAGGAAACAAGGCGTTAGCCTCCGGCCAGTGCG
TCCGCGTGTTCTTCACTTCGTTCCAGAAGCTGGTGAGTTTTGGCCCGCCT
GTGGTTACGACCAACATCAATCTGACGCCGCAGGAGGCAGTGAGGATGAA
GATCTGCGTTGTATTCCGTACGACGTGA
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