Ggra3272.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3272.t1
Unique Name	Ggra3272.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	488

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:184436..185899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3272	Ggra3272	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 184436..185899 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3272.t1.start1	Ggra3272.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 184436..184438 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3272.t1.CDS1	Ggra3272.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 184436..185899 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3272.t1.exon1	Ggra3272.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 184436..185899 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3272.t1.stop1	Ggra3272.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 185897..185899 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3272.t1	Ggra3272.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 184436..185899 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:184436..185899+
coding sequence from alignment at tig00000851_pilon:184436..185899+

mRNA sequence

>Ggra3272.t1 ID=Ggra3272.t1|Name=Ggra3272.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=488bp
MAHPPSLLLDRLSDAILVRIARMLLTNRASLLAFMSTSPNCRSAVISATN
QSFCFSNRTGDDPERSLFDKLSSTLTSIQFKMPDEADFTYRPLGCPLLRT
LEVTAPKLFLSFLPHGLRDLRLHLPFSLDRQQFFDALSELTLFSLHLHLL
PTPSKTQPPSLLEYPQLSVCLEPAGKGEILAAVCPFLQVLRFFFVLAVPF
EPTSRLFPNLRTFSTYGTGQTQFGPIERISLRNSSPRFASLLQDKLVEVH
VQQSLTYDQVFALQRCRNLRSLYLTLHSGAEAGMIAAPFLRVLKRLELEW
IPIPPHPADTSLENFEDEVRLDADQPRFWSPPGGLIPAIFEETERLEELR
LCAMSCDRGDLRRTLKHLGRRLKRLTVEVCGQPESASSRMIALLHFLCRY
NHNLEWFEPANIEELRENPVVLGEFHLEADCTIELWHRVFEMVSRRLPFL
TLPSELRFNGFLAPNNELLTREPWCEIGFDVDAEDLF*

spliced messenger RNA

>Ggra3272.t1 ID=Ggra3272.t1|Name=Ggra3272.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000851_pilon:184436..185899+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATCCTCCCAGCCTACTGCTCGACCGCCTTTCTGACGCCATCCT
GGTCCGCATCGCGCGCATGCTACTCACCAACCGCGCGTCGCTTCTCGCCT
TCATGTCGACGTCTCCCAATTGTCGATCCGCCGTCATCTCCGCCACCAAC
CAGTCTTTTTGCTTCAGCAATCGCACCGGGGACGACCCTGAAAGGAGCTT
GTTTGATAAACTCTCGTCTACTCTCACCTCCATCCAATTCAAAATGCCGG
ACGAAGCTGACTTCACATATCGCCCTCTTGGTTGCCCGCTTCTTCGCACA
CTGGAAGTCACCGCCCCCAAATTATTTCTTAGTTTCTTACCGCACGGTCT
ACGCGATCTACGTCTCCATCTCCCGTTTTCTCTCGACCGCCAGCAGTTCT
TCGATGCGTTATCCGAACTCACGCTATTCTCACTTCACCTCCATCTACTC
CCGACCCCGTCTAAGACGCAGCCCCCCTCTCTCTTAGAGTATCCTCAACT
CTCTGTCTGCCTCGAGCCAGCCGGCAAAGGTGAGATTCTCGCTGCCGTTT
GTCCCTTTCTACAGGTGCTTCGTTTCTTCTTTGTCCTCGCCGTACCATTT
GAACCCACTTCGCGACTGTTCCCCAACCTACGCACCTTCTCCACGTACGG
AACTGGACAGACGCAATTCGGCCCCATAGAAAGAATCTCGCTCCGCAACA
GTTCACCGCGTTTCGCCAGCTTGTTGCAGGACAAACTGGTAGAAGTGCAT
GTCCAGCAGTCGCTCACATACGACCAGGTGTTCGCGCTGCAACGTTGCCG
TAACCTTCGCTCGTTGTATCTCACGCTGCACTCAGGCGCGGAAGCGGGTA
TGATTGCAGCACCGTTTCTTCGCGTGTTAAAGCGCCTGGAGCTCGAGTGG
ATACCGATACCGCCGCATCCGGCCGATACTTCGCTGGAGAATTTTGAAGA
TGAGGTGCGCCTAGACGCGGATCAGCCGCGCTTCTGGAGCCCGCCAGGGG
GCCTCATACCCGCGATTTTTGAGGAGACGGAGCGGCTAGAGGAGCTTCGA
TTGTGCGCCATGTCGTGTGATAGGGGGGACTTGAGGAGAACTTTAAAGCA
TTTGGGGAGGCGGCTTAAACGACTGACAGTTGAAGTGTGCGGCCAGCCAG
AGTCGGCTTCGTCACGAATGATTGCGTTGTTGCATTTTTTGTGTCGGTAC
AATCATAATCTGGAGTGGTTTGAGCCGGCTAACATTGAGGAGCTAAGGGA
GAATCCTGTTGTTTTGGGGGAGTTTCACCTTGAAGCGGATTGCACGATCG
AACTGTGGCACCGCGTTTTTGAAATGGTGTCCAGAAGATTGCCGTTTCTT
ACGCTGCCTTCGGAGTTAAGGTTCAATGGGTTCCTTGCCCCGAACAATGA
GTTGTTGACGAGGGAACCATGGTGTGAAATTGGTTTTGACGTTGATGCGG
AGGATCTATTCTAG

protein sequence of Ggra3272.t1

>Ggra3272.t1 ID=Ggra3272.t1|Name=Ggra3272.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=488bp
MAHPPSLLLDRLSDAILVRIARMLLTNRASLLAFMSTSPNCRSAVISATN
QSFCFSNRTGDDPERSLFDKLSSTLTSIQFKMPDEADFTYRPLGCPLLRT
LEVTAPKLFLSFLPHGLRDLRLHLPFSLDRQQFFDALSELTLFSLHLHLL
PTPSKTQPPSLLEYPQLSVCLEPAGKGEILAAVCPFLQVLRFFFVLAVPF
EPTSRLFPNLRTFSTYGTGQTQFGPIERISLRNSSPRFASLLQDKLVEVH
VQQSLTYDQVFALQRCRNLRSLYLTLHSGAEAGMIAAPFLRVLKRLELEW
IPIPPHPADTSLENFEDEVRLDADQPRFWSPPGGLIPAIFEETERLEELR
LCAMSCDRGDLRRTLKHLGRRLKRLTVEVCGQPESASSRMIALLHFLCRY
NHNLEWFEPANIEELRENPVVLGEFHLEADCTIELWHRVFEMVSRRLPFL
TLPSELRFNGFLAPNNELLTREPWCEIGFDVDAEDLF*

mRNA from alignment at tig00000851_pilon:184436..185899+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3272.t1 ID=Ggra3272.t1|Name=Ggra3272.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000851_pilon:184436..185899+ (Gracilaria gracilis GNS1m male)
ATGGCTCATCCTCCCAGCCTACTGCTCGACCGCCTTTCTGACGCCATCCT
GGTCCGCATCGCGCGCATGCTACTCACCAACCGCGCGTCGCTTCTCGCCT
TCATGTCGACGTCTCCCAATTGTCGATCCGCCGTCATCTCCGCCACCAAC
CAGTCTTTTTGCTTCAGCAATCGCACCGGGGACGACCCTGAAAGGAGCTT
GTTTGATAAACTCTCGTCTACTCTCACCTCCATCCAATTCAAAATGCCGG
ACGAAGCTGACTTCACATATCGCCCTCTTGGTTGCCCGCTTCTTCGCACA
CTGGAAGTCACCGCCCCCAAATTATTTCTTAGTTTCTTACCGCACGGTCT
ACGCGATCTACGTCTCCATCTCCCGTTTTCTCTCGACCGCCAGCAGTTCT
TCGATGCGTTATCCGAACTCACGCTATTCTCACTTCACCTCCATCTACTC
CCGACCCCGTCTAAGACGCAGCCCCCCTCTCTCTTAGAGTATCCTCAACT
CTCTGTCTGCCTCGAGCCAGCCGGCAAAGGTGAGATTCTCGCTGCCGTTT
GTCCCTTTCTACAGGTGCTTCGTTTCTTCTTTGTCCTCGCCGTACCATTT
GAACCCACTTCGCGACTGTTCCCCAACCTACGCACCTTCTCCACGTACGG
AACTGGACAGACGCAATTCGGCCCCATAGAAAGAATCTCGCTCCGCAACA
GTTCACCGCGTTTCGCCAGCTTGTTGCAGGACAAACTGGTAGAAGTGCAT
GTCCAGCAGTCGCTCACATACGACCAGGTGTTCGCGCTGCAACGTTGCCG
TAACCTTCGCTCGTTGTATCTCACGCTGCACTCAGGCGCGGAAGCGGGTA
TGATTGCAGCACCGTTTCTTCGCGTGTTAAAGCGCCTGGAGCTCGAGTGG
ATACCGATACCGCCGCATCCGGCCGATACTTCGCTGGAGAATTTTGAAGA
TGAGGTGCGCCTAGACGCGGATCAGCCGCGCTTCTGGAGCCCGCCAGGGG
GCCTCATACCCGCGATTTTTGAGGAGACGGAGCGGCTAGAGGAGCTTCGA
TTGTGCGCCATGTCGTGTGATAGGGGGGACTTGAGGAGAACTTTAAAGCA
TTTGGGGAGGCGGCTTAAACGACTGACAGTTGAAGTGTGCGGCCAGCCAG
AGTCGGCTTCGTCACGAATGATTGCGTTGTTGCATTTTTTGTGTCGGTAC
AATCATAATCTGGAGTGGTTTGAGCCGGCTAACATTGAGGAGCTAAGGGA
GAATCCTGTTGTTTTGGGGGAGTTTCACCTTGAAGCGGATTGCACGATCG
AACTGTGGCACCGCGTTTTTGAAATGGTGTCCAGAAGATTGCCGTTTCTT
ACGCTGCCTTCGGAGTTAAGGTTCAATGGGTTCCTTGCCCCGAACAATGA
GTTGTTGACGAGGGAACCATGGTGTGAAATTGGTTTTGACGTTGATGCGG
AGGATCTATTCTAG

Coding sequence (CDS) from alignment at tig00000851_pilon:184436..185899+

>Ggra3272.t1 ID=Ggra3272.t1|Name=Ggra3272.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00000851_pilon:184436..185899+ (Gracilaria gracilis GNS1m male)
ATGGCTCATCCTCCCAGCCTACTGCTCGACCGCCTTTCTGACGCCATCCT
GGTCCGCATCGCGCGCATGCTACTCACCAACCGCGCGTCGCTTCTCGCCT
TCATGTCGACGTCTCCCAATTGTCGATCCGCCGTCATCTCCGCCACCAAC
CAGTCTTTTTGCTTCAGCAATCGCACCGGGGACGACCCTGAAAGGAGCTT
GTTTGATAAACTCTCGTCTACTCTCACCTCCATCCAATTCAAAATGCCGG
ACGAAGCTGACTTCACATATCGCCCTCTTGGTTGCCCGCTTCTTCGCACA
CTGGAAGTCACCGCCCCCAAATTATTTCTTAGTTTCTTACCGCACGGTCT
ACGCGATCTACGTCTCCATCTCCCGTTTTCTCTCGACCGCCAGCAGTTCT
TCGATGCGTTATCCGAACTCACGCTATTCTCACTTCACCTCCATCTACTC
CCGACCCCGTCTAAGACGCAGCCCCCCTCTCTCTTAGAGTATCCTCAACT
CTCTGTCTGCCTCGAGCCAGCCGGCAAAGGTGAGATTCTCGCTGCCGTTT
GTCCCTTTCTACAGGTGCTTCGTTTCTTCTTTGTCCTCGCCGTACCATTT
GAACCCACTTCGCGACTGTTCCCCAACCTACGCACCTTCTCCACGTACGG
AACTGGACAGACGCAATTCGGCCCCATAGAAAGAATCTCGCTCCGCAACA
GTTCACCGCGTTTCGCCAGCTTGTTGCAGGACAAACTGGTAGAAGTGCAT
GTCCAGCAGTCGCTCACATACGACCAGGTGTTCGCGCTGCAACGTTGCCG
TAACCTTCGCTCGTTGTATCTCACGCTGCACTCAGGCGCGGAAGCGGGTA
TGATTGCAGCACCGTTTCTTCGCGTGTTAAAGCGCCTGGAGCTCGAGTGG
ATACCGATACCGCCGCATCCGGCCGATACTTCGCTGGAGAATTTTGAAGA
TGAGGTGCGCCTAGACGCGGATCAGCCGCGCTTCTGGAGCCCGCCAGGGG
GCCTCATACCCGCGATTTTTGAGGAGACGGAGCGGCTAGAGGAGCTTCGA
TTGTGCGCCATGTCGTGTGATAGGGGGGACTTGAGGAGAACTTTAAAGCA
TTTGGGGAGGCGGCTTAAACGACTGACAGTTGAAGTGTGCGGCCAGCCAG
AGTCGGCTTCGTCACGAATGATTGCGTTGTTGCATTTTTTGTGTCGGTAC
AATCATAATCTGGAGTGGTTTGAGCCGGCTAACATTGAGGAGCTAAGGGA
GAATCCTGTTGTTTTGGGGGAGTTTCACCTTGAAGCGGATTGCACGATCG
AACTGTGGCACCGCGTTTTTGAAATGGTGTCCAGAAGATTGCCGTTTCTT
ACGCTGCCTTCGGAGTTAAGGTTCAATGGGTTCCTTGCCCCGAACAATGA
GTTGTTGACGAGGGAACCATGGTGTGAAATTGGTTTTGACGTTGATGCGG
AGGATCTATTCTAG