Ggra3233.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3233.t1
Unique NameGgra3233.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:135604..136136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705379.1
Preferred nameBET1
Max annot lvl2759|Eukaryota
KEGG koko:K08504,ko:K21412
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019905,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030173,GO:0031090,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0050789,GO:0050794,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060627,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098827,GO:2000156
Evalue4.27e-14
EggNOG OGsKOG3385@1|root,KOG3385@2759|Eukaryota
Descriptionprotein transport
COG categoryK
BRITEko00000,ko00001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3233Ggra3233Gracilaria gracilis GNS1m malegenetig00000922_pilon 135604..136136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3233.t1Ggra3233.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 135604..136136 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3233.t1.start1Ggra3233.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 135604..135606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3233.t1.CDS1Ggra3233.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 135604..135843 +
Ggra3233.t1.CDS2Ggra3233.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000922_pilon 135927..136136 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3233.t1.exon1Ggra3233.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 135604..135843 +
Ggra3233.t1.exon2Ggra3233.t1.exon2Gracilaria gracilis GNS1m maleexontig00000922_pilon 135927..136136 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3233.t1.intron1Ggra3233.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000922_pilon 135844..135926 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3233.t1.stop1Ggra3233.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 136134..136136 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3233.t1 ID=Ggra3233.t1|Name=Ggra3233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=150bp
MTAVPNDEAQRRALLFGARTEPGTYRRAGAAAGAAAGAAAGAAAGAAAGA
PMGAADNELLEQNNVERVDGLHGQVRQMRHLAIDIGQEVRDQNAMLDAMQ
GTFDQGTDSVRRTIAQLRRLARSGGGAHLCALALFSLAFFVLIYLLLRR*
back to top

spliced messenger RNA

>Ggra3233.t1 ID=Ggra3233.t1|Name=Ggra3233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000922_pilon:135604..136136+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCGTGCCAAACGACGAGGCGCAGCGGCGCGCGCTGCTGTTTGG
CGCGCGCACGGAGCCCGGCACGTACCGCCGCGCCGGCGCGGCTGCGGGCG
CGGCTGCGGGCGCGGCTGCGGGCGCGGCTGCGGGCGCGGCTGCGGGCGCG
CCGATGGGTGCCGCCGACAACGAGCTACTCGAGCAGAACAACGTGGAACG
GGTGGACGGACTGCACGGCCAAGTACGCCAGATGCGACACCTTGCCATCG
ACATAGGACAGGAGGTGCGCGACCAGAACGCCATGCTGGACGCCATGCAG
GGGACATTTGATCAGGGGACCGACTCGGTGCGGCGCACCATCGCGCAGCT
GCGGCGGCTGGCGCGATCGGGCGGCGGCGCGCATTTGTGCGCGCTGGCGC
TCTTCTCACTGGCCTTCTTCGTGCTCATCTATCTGCTGCTACGCCGATAG
back to top

protein sequence of Ggra3233.t1

>Ggra3233.t1 ID=Ggra3233.t1|Name=Ggra3233.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MTAVPNDEAQRRALLFGARTEPGTYRRAGAAAGAAAGAAAGAAAGAAAGA
PMGAADNELLEQNNVERVDGLHGQVRQMRHLAIDIGQEVRDQNAMLDAMQ
GTFDQGTDSVRRTIAQLRRLARSGGGAHLCALALFSLAFFVLIYLLLRR*
back to top

mRNA from alignment at tig00000922_pilon:135604..136136+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3233.t1 ID=Ggra3233.t1|Name=Ggra3233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=533bp|location=Sequence derived from alignment at tig00000922_pilon:135604..136136+ (Gracilaria gracilis GNS1m male)
ATGACGGCCGTGCCAAACGACGAGGCGCAGCGGCGCGCGCTGCTGTTTGG
CGCGCGCACGGAGCCCGGCACGTACCGCCGCGCCGGCGCGGCTGCGGGCG
CGGCTGCGGGCGCGGCTGCGGGCGCGGCTGCGGGCGCGGCTGCGGGCGCG
CCGATGGGTGCCGCCGACAACGAGCTACTCGAGCAGAACAACGTGGAACG
GGTGGACGGACTGCACGGCCAAGTACGCCAGATGCGACACGTAAGTGGAC
AAGCACAACTGTTGCGCGACGGCGCGGGTGCAAAGCGCGAGCAACGACGC
TGACTGACGCGCGTGTGCAACAGCTTGCCATCGACATAGGACAGGAGGTG
CGCGACCAGAACGCCATGCTGGACGCCATGCAGGGGACATTTGATCAGGG
GACCGACTCGGTGCGGCGCACCATCGCGCAGCTGCGGCGGCTGGCGCGAT
CGGGCGGCGGCGCGCATTTGTGCGCGCTGGCGCTCTTCTCACTGGCCTTC
TTCGTGCTCATCTATCTGCTGCTACGCCGATAG
back to top

Coding sequence (CDS) from alignment at tig00000922_pilon:135604..136136+

>Ggra3233.t1 ID=Ggra3233.t1|Name=Ggra3233.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00000922_pilon:135604..136136+ (Gracilaria gracilis GNS1m male)
ATGACGGCCGTGCCAAACGACGAGGCGCAGCGGCGCGCGCTGCTGTTTGG
CGCGCGCACGGAGCCCGGCACGTACCGCCGCGCCGGCGCGGCTGCGGGCG
CGGCTGCGGGCGCGGCTGCGGGCGCGGCTGCGGGCGCGGCTGCGGGCGCG
CCGATGGGTGCCGCCGACAACGAGCTACTCGAGCAGAACAACGTGGAACG
GGTGGACGGACTGCACGGCCAAGTACGCCAGATGCGACACCTTGCCATCG
ACATAGGACAGGAGGTGCGCGACCAGAACGCCATGCTGGACGCCATGCAG
GGGACATTTGATCAGGGGACCGACTCGGTGCGGCGCACCATCGCGCAGCT
GCGGCGGCTGGCGCGATCGGGCGGCGGCGCGCATTTGTGCGCGCTGGCGC
TCTTCTCACTGGCCTTCTTCGTGCTCATCTATCTGCTGCTACGCCGATAG
back to top