Ggra3226.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3226.t1
Unique NameGgra3226.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:120099..121229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3226Ggra3226Gracilaria gracilis GNS1m malegenetig00000922_pilon 120099..121229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3226.t1Ggra3226.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 120099..121229 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3226.t1.stop1Ggra3226.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 120099..120101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3226.t1.CDS1Ggra3226.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 120099..120808 -
Ggra3226.t1.CDS2Ggra3226.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000922_pilon 121029..121055 -
Ggra3226.t1.CDS3Ggra3226.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000922_pilon 121154..121229 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3226.t1.exon1Ggra3226.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 120099..120808 -
Ggra3226.t1.exon2Ggra3226.t1.exon2Gracilaria gracilis GNS1m maleexontig00000922_pilon 121029..121055 -
Ggra3226.t1.exon3Ggra3226.t1.exon3Gracilaria gracilis GNS1m maleexontig00000922_pilon 121154..121229 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3226.t1.intron1Ggra3226.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000922_pilon 120809..121028 -
Ggra3226.t1.intron2Ggra3226.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000922_pilon 121056..121153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3226.t1.start1Ggra3226.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 121227..121229 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3226.t1 ID=Ggra3226.t1|Name=Ggra3226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MADRSDQSDASVQRLSRLLLEGWTMLAETCPRASYDAADVDADVAATPAG
TAATDGAEAAAASAALGDKLLQGWTMLNRACSVCGTPLMRAPRDGAVLCV
LCNEGERAERAERAEHADDDAAAILSRANRELSVSRLEAVRGDRLSAETS
LVQVERGAERRRVRAPRAAAADSADAQLRRARRMDGAQLATLTGAAGADG
GGDESLLCVDEELRRAEQAAARALRSVRERLAQVRDVEALRACLGAMREA
CDAVRAARAARALPSTTRLL*
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spliced messenger RNA

>Ggra3226.t1 ID=Ggra3226.t1|Name=Ggra3226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000922_pilon:120099..121229- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATCGTTCCGATCAATCGGACGCCAGCGTGCAACGTCTGTCGCG
CCTTCTGCTCGAGGGCTGGACCATGCTGGCCGAGACGTGCCCGCGCGCAA
GCTACGACGCCGCCGACGTTGACGCTGACGTAGCGGCCACGCCGGCCGGC
ACCGCCGCGACAGACGGCGCCGAGGCGGCGGCGGCGTCCGCGGCGCTGGG
CGACAAGCTGCTGCAGGGCTGGACCATGCTCAACCGCGCGTGCTCAGTGT
GCGGCACGCCGCTCATGCGCGCGCCGCGCGACGGCGCCGTGCTGTGCGTG
CTGTGCAACGAAGGCGAGCGCGCAGAGCGCGCAGAGCGCGCAGAGCACGC
CGACGACGACGCGGCCGCCATCCTGAGCCGCGCCAACCGCGAGCTGAGCG
TGAGCCGGCTGGAGGCGGTGCGCGGCGACCGCCTCAGCGCGGAGACGTCG
CTGGTGCAGGTGGAGCGCGGCGCGGAGCGGCGGCGCGTACGAGCGCCGCG
CGCCGCCGCCGCCGACAGCGCCGACGCGCAGCTGCGCCGCGCGCGCCGCA
TGGACGGCGCGCAGCTGGCCACGCTGACGGGCGCCGCCGGCGCCGACGGC
GGCGGCGACGAGTCGCTGCTGTGCGTGGACGAGGAGCTGCGGCGCGCCGA
GCAGGCGGCCGCGCGAGCGCTGCGCTCCGTCAGAGAGCGGCTGGCGCAGG
TGCGCGACGTGGAGGCGCTGCGCGCGTGTCTGGGCGCCATGCGCGAGGCG
TGCGACGCCGTGCGCGCTGCGCGCGCTGCGCGTGCGCTGCCGTCCACCAC
GCGTCTGCTGTGA
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protein sequence of Ggra3226.t1

>Ggra3226.t1 ID=Ggra3226.t1|Name=Ggra3226.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MADRSDQSDASVQRLSRLLLEGWTMLAETCPRASYDAADVDADVAATPAG
TAATDGAEAAAASAALGDKLLQGWTMLNRACSVCGTPLMRAPRDGAVLCV
LCNEGERAERAERAEHADDDAAAILSRANRELSVSRLEAVRGDRLSAETS
LVQVERGAERRRVRAPRAAAADSADAQLRRARRMDGAQLATLTGAAGADG
GGDESLLCVDEELRRAEQAAARALRSVRERLAQVRDVEALRACLGAMREA
CDAVRAARAARALPSTTRLL*
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mRNA from alignment at tig00000922_pilon:120099..121229-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3226.t1 ID=Ggra3226.t1|Name=Ggra3226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000922_pilon:120099..121229- (Gracilaria gracilis GNS1m male)
ATGGCCGATCGTTCCGATCAATCGGACGCCAGCGTGCAACGTCTGTCGCG
CCTTCTGCTCGAGGGCTGGACCATGCGTAAGTAGCTCCCGCTCCTCGCAC
AATCGCACGCTCTCCAACGCTGTACTCTAACCGCTACCGCTTTCTCTCTC
TCTCTCTCTCTCTCTCCTGCGCAGTGGCCGAGACGTGCCCGCGCGCAAGC
TGTAACATGCCGCTCGCGCGCTCGCGACAGGGAAGAGTGGTGTGCTGCAA
CTGCCGCGCCGACGTGGTCACGCAGCCGCCGCTGCAGCTGCTTGCGCCCG
CGCCCGCGCCCGCGCCCGCGCCCGCGCCCGCGCCCGCGCCCCGCGCCCGC
GCCCGCGCCCGCGCCCGCGCCCGCGCCGAACGGCGACATGCCGCACACCA
CCACGTCGCCGCCGCCCACAGACGACGCCGCCGACGTTGACGCTGACGTA
GCGGCCACGCCGGCCGGCACCGCCGCGACAGACGGCGCCGAGGCGGCGGC
GGCGTCCGCGGCGCTGGGCGACAAGCTGCTGCAGGGCTGGACCATGCTCA
ACCGCGCGTGCTCAGTGTGCGGCACGCCGCTCATGCGCGCGCCGCGCGAC
GGCGCCGTGCTGTGCGTGCTGTGCAACGAAGGCGAGCGCGCAGAGCGCGC
AGAGCGCGCAGAGCACGCCGACGACGACGCGGCCGCCATCCTGAGCCGCG
CCAACCGCGAGCTGAGCGTGAGCCGGCTGGAGGCGGTGCGCGGCGACCGC
CTCAGCGCGGAGACGTCGCTGGTGCAGGTGGAGCGCGGCGCGGAGCGGCG
GCGCGTACGAGCGCCGCGCGCCGCCGCCGCCGACAGCGCCGACGCGCAGC
TGCGCCGCGCGCGCCGCATGGACGGCGCGCAGCTGGCCACGCTGACGGGC
GCCGCCGGCGCCGACGGCGGCGGCGACGAGTCGCTGCTGTGCGTGGACGA
GGAGCTGCGGCGCGCCGAGCAGGCGGCCGCGCGAGCGCTGCGCTCCGTCA
GAGAGCGGCTGGCGCAGGTGCGCGACGTGGAGGCGCTGCGCGCGTGTCTG
GGCGCCATGCGCGAGGCGTGCGACGCCGTGCGCGCTGCGCGCGCTGCGCG
TGCGCTGCCGTCCACCACGCGTCTGCTGTGA
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Coding sequence (CDS) from alignment at tig00000922_pilon:120099..121229-

>Ggra3226.t1 ID=Ggra3226.t1|Name=Ggra3226.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000922_pilon:120099..121229- (Gracilaria gracilis GNS1m male)
ATGGCCGATCGTTCCGATCAATCGGACGCCAGCGTGCAACGTCTGTCGCG
CCTTCTGCTCGAGGGCTGGACCATGCTGGCCGAGACGTGCCCGCGCGCAA
GCTACGACGCCGCCGACGTTGACGCTGACGTAGCGGCCACGCCGGCCGGC
ACCGCCGCGACAGACGGCGCCGAGGCGGCGGCGGCGTCCGCGGCGCTGGG
CGACAAGCTGCTGCAGGGCTGGACCATGCTCAACCGCGCGTGCTCAGTGT
GCGGCACGCCGCTCATGCGCGCGCCGCGCGACGGCGCCGTGCTGTGCGTG
CTGTGCAACGAAGGCGAGCGCGCAGAGCGCGCAGAGCGCGCAGAGCACGC
CGACGACGACGCGGCCGCCATCCTGAGCCGCGCCAACCGCGAGCTGAGCG
TGAGCCGGCTGGAGGCGGTGCGCGGCGACCGCCTCAGCGCGGAGACGTCG
CTGGTGCAGGTGGAGCGCGGCGCGGAGCGGCGGCGCGTACGAGCGCCGCG
CGCCGCCGCCGCCGACAGCGCCGACGCGCAGCTGCGCCGCGCGCGCCGCA
TGGACGGCGCGCAGCTGGCCACGCTGACGGGCGCCGCCGGCGCCGACGGC
GGCGGCGACGAGTCGCTGCTGTGCGTGGACGAGGAGCTGCGGCGCGCCGA
GCAGGCGGCCGCGCGAGCGCTGCGCTCCGTCAGAGAGCGGCTGGCGCAGG
TGCGCGACGTGGAGGCGCTGCGCGCGTGTCTGGGCGCCATGCGCGAGGCG
TGCGACGCCGTGCGCGCTGCGCGCGCTGCGCGTGCGCTGCCGTCCACCAC
GCGTCTGCTGTGA
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