Ggra3218.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3218.t2
Unique Name	Ggra3218.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	615

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000922_pilon	contig	tig00000922_pilon:103340..105184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3218	Ggra3218	Gracilaria gracilis GNS1m male	gene	tig00000922_pilon 101075..105184 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3218.t2.start1	Ggra3218.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000922_pilon 103340..103342 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3218.t2.CDS1	Ggra3218.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000922_pilon 103340..105184 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3218.t2.exon1	Ggra3218.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000922_pilon 103340..105184 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3218.t2.stop1	Ggra3218.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000922_pilon 105182..105184 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3218.t2	Ggra3218.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000922_pilon 103340..105184 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000922_pilon:103340..105184+
coding sequence from alignment at tig00000922_pilon:103340..105184+

mRNA sequence

>Ggra3218.t2 ID=Ggra3218.t2|Name=Ggra3218.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp
MIPASRQGEVNDYTQRTACRHPNVSEYREHGSEQLSNATLPGLSDIQTTH
VEEREVPHVDSRDVVNSGHMLPDASLATSSDIEDSAPSTGNIVPTVVDPN
AAEPVALSSKNFRRHSNRISASLRYTYAEDETLNFSALNEEDQLVNEPRS
KLSIPKVRSGTSSHANDGNCEDVDIFEAANRAAVDINALVDQSKENDSAV
GSLDGLDLEPVVLPGDDDYSVAPMSPMQNFTPVAGIYYGNSSPSEETMSP
EETVSDKIGIAEYPEYEVLRVAENENEDSVFGSEPNTPVPKESSGWRDAR
PKRSRDLSEQVRDSVAVQLASLSSIHGGRGAGDRTTGKMVPEVLLRDWSG
NTPIEPTVEVVDSAPNSRSSASHVFRTERFPRNVQISSGTDSYRPGNNSN
TQVRDRLQEAKDRLLRVSLHTTDEDHSTQNPSHVRQDVPGKFSTHGFPRR
RIGDVIPENEGSTAVNQARANGRLGHSMAFERGIHHRSNERSRTFEPALP
KAFAMDPVLQDFQVPVTRKSLSEAGGRTRGLDHTTAFLDEESYAGNTRNV
RKADFGFQPPNHDSRTIQLPSNRKQTSDVEHGASAARDESQAFRNVVGRL
VNRMQSAKRMLSTS*

spliced messenger RNA

>Ggra3218.t2 ID=Ggra3218.t2|Name=Ggra3218.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000922_pilon:103340..105184+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCAGCAAGCCGGCAAGGTGAAGTGAATGACTACACCCAACGAAC
GGCATGCCGTCACCCCAACGTCTCGGAATATAGAGAGCATGGTAGTGAGC
AGCTTTCTAACGCAACGCTGCCTGGTCTCTCGGATATTCAGACTACCCAT
GTCGAAGAAAGAGAAGTGCCCCATGTTGATAGCCGTGATGTTGTGAATTC
AGGACATATGCTTCCAGATGCTAGTCTTGCAACATCTTCCGATATTGAAG
ACAGTGCGCCTTCAACTGGCAATATCGTCCCCACAGTTGTTGATCCAAAT
GCTGCGGAACCCGTGGCTCTATCGTCCAAGAATTTCCGTCGCCACAGCAA
CCGGATAAGTGCAAGCCTCCGTTATACATACGCCGAAGACGAAACTTTGA
ACTTCTCTGCTCTCAATGAAGAAGACCAGCTTGTCAACGAGCCGAGATCA
AAGCTCTCTATTCCCAAAGTTAGATCTGGAACTTCTTCCCACGCGAACGA
TGGAAACTGTGAAGACGTCGACATTTTTGAGGCTGCAAACCGTGCTGCTG
TTGACATTAACGCGTTGGTGGATCAGTCAAAGGAAAATGACTCAGCAGTG
GGAAGTTTGGATGGACTTGACTTGGAGCCAGTTGTTCTACCGGGAGATGA
TGACTACTCGGTTGCTCCAATGTCACCTATGCAGAACTTTACCCCAGTTG
CAGGTATTTACTATGGAAATTCGTCTCCGTCTGAAGAAACAATGTCCCCT
GAAGAAACTGTGTCAGACAAGATTGGAATCGCAGAATACCCTGAATATGA
AGTTTTGAGGGTTGCGGAAAATGAAAATGAAGACTCTGTGTTTGGTTCTG
AACCAAACACCCCCGTACCAAAAGAAAGTTCAGGATGGCGGGATGCACGA
CCGAAGAGATCTCGTGACCTCAGTGAACAGGTAAGAGATTCTGTTGCAGT
GCAACTAGCGAGTTTATCTTCAATTCACGGTGGTCGCGGTGCAGGTGACA
GAACTACTGGAAAAATGGTCCCCGAAGTCTTATTGCGTGATTGGTCTGGG
AATACTCCCATTGAACCAACTGTAGAAGTAGTCGACTCTGCTCCGAACTC
TAGATCTTCGGCGTCACATGTCTTTCGCACAGAGCGATTCCCCAGGAATG
TGCAGATTAGTAGTGGGACCGATTCTTATAGACCTGGAAACAATTCGAAT
ACTCAAGTGCGTGACCGACTCCAGGAAGCGAAGGATCGTCTACTTCGAGT
TTCATTACACACCACAGATGAAGACCATTCTACTCAAAATCCATCTCATG
TACGGCAGGATGTGCCCGGGAAATTTTCTACCCATGGTTTCCCGCGACGA
AGAATTGGTGATGTGATTCCCGAGAACGAAGGCTCGACTGCTGTGAATCA
AGCTCGTGCGAATGGAAGACTGGGTCATTCGATGGCTTTCGAACGTGGAA
TTCATCATAGAAGTAATGAGCGAAGTCGAACATTCGAGCCGGCTCTTCCC
AAGGCCTTTGCTATGGACCCAGTTCTGCAGGACTTCCAAGTGCCTGTCAC
GCGAAAATCTTTGTCAGAAGCTGGAGGTAGGACGAGGGGGTTGGATCACA
CTACTGCGTTTCTTGACGAAGAATCCTATGCTGGAAACACGCGGAATGTT
AGGAAAGCAGATTTTGGCTTTCAGCCGCCAAACCATGACAGTCGAACGAT
TCAGCTGCCATCAAATCGCAAGCAGACGTCTGATGTGGAACATGGCGCCA
GTGCGGCGAGGGATGAGAGTCAAGCTTTCAGAAATGTAGTGGGTAGACTG
GTGAACAGAATGCAAAGTGCAAAACGCATGCTTTCGACTAGTTGA

protein sequence of Ggra3218.t2

>Ggra3218.t2 ID=Ggra3218.t2|Name=Ggra3218.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=615bp
MIPASRQGEVNDYTQRTACRHPNVSEYREHGSEQLSNATLPGLSDIQTTH
VEEREVPHVDSRDVVNSGHMLPDASLATSSDIEDSAPSTGNIVPTVVDPN
AAEPVALSSKNFRRHSNRISASLRYTYAEDETLNFSALNEEDQLVNEPRS
KLSIPKVRSGTSSHANDGNCEDVDIFEAANRAAVDINALVDQSKENDSAV
GSLDGLDLEPVVLPGDDDYSVAPMSPMQNFTPVAGIYYGNSSPSEETMSP
EETVSDKIGIAEYPEYEVLRVAENENEDSVFGSEPNTPVPKESSGWRDAR
PKRSRDLSEQVRDSVAVQLASLSSIHGGRGAGDRTTGKMVPEVLLRDWSG
NTPIEPTVEVVDSAPNSRSSASHVFRTERFPRNVQISSGTDSYRPGNNSN
TQVRDRLQEAKDRLLRVSLHTTDEDHSTQNPSHVRQDVPGKFSTHGFPRR
RIGDVIPENEGSTAVNQARANGRLGHSMAFERGIHHRSNERSRTFEPALP
KAFAMDPVLQDFQVPVTRKSLSEAGGRTRGLDHTTAFLDEESYAGNTRNV
RKADFGFQPPNHDSRTIQLPSNRKQTSDVEHGASAARDESQAFRNVVGRL
VNRMQSAKRMLSTS*

mRNA from alignment at tig00000922_pilon:103340..105184+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3218.t2 ID=Ggra3218.t2|Name=Ggra3218.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000922_pilon:103340..105184+ (Gracilaria gracilis GNS1m male)
ATGATTCCAGCAAGCCGGCAAGGTGAAGTGAATGACTACACCCAACGAAC
GGCATGCCGTCACCCCAACGTCTCGGAATATAGAGAGCATGGTAGTGAGC
AGCTTTCTAACGCAACGCTGCCTGGTCTCTCGGATATTCAGACTACCCAT
GTCGAAGAAAGAGAAGTGCCCCATGTTGATAGCCGTGATGTTGTGAATTC
AGGACATATGCTTCCAGATGCTAGTCTTGCAACATCTTCCGATATTGAAG
ACAGTGCGCCTTCAACTGGCAATATCGTCCCCACAGTTGTTGATCCAAAT
GCTGCGGAACCCGTGGCTCTATCGTCCAAGAATTTCCGTCGCCACAGCAA
CCGGATAAGTGCAAGCCTCCGTTATACATACGCCGAAGACGAAACTTTGA
ACTTCTCTGCTCTCAATGAAGAAGACCAGCTTGTCAACGAGCCGAGATCA
AAGCTCTCTATTCCCAAAGTTAGATCTGGAACTTCTTCCCACGCGAACGA
TGGAAACTGTGAAGACGTCGACATTTTTGAGGCTGCAAACCGTGCTGCTG
TTGACATTAACGCGTTGGTGGATCAGTCAAAGGAAAATGACTCAGCAGTG
GGAAGTTTGGATGGACTTGACTTGGAGCCAGTTGTTCTACCGGGAGATGA
TGACTACTCGGTTGCTCCAATGTCACCTATGCAGAACTTTACCCCAGTTG
CAGGTATTTACTATGGAAATTCGTCTCCGTCTGAAGAAACAATGTCCCCT
GAAGAAACTGTGTCAGACAAGATTGGAATCGCAGAATACCCTGAATATGA
AGTTTTGAGGGTTGCGGAAAATGAAAATGAAGACTCTGTGTTTGGTTCTG
AACCAAACACCCCCGTACCAAAAGAAAGTTCAGGATGGCGGGATGCACGA
CCGAAGAGATCTCGTGACCTCAGTGAACAGGTAAGAGATTCTGTTGCAGT
GCAACTAGCGAGTTTATCTTCAATTCACGGTGGTCGCGGTGCAGGTGACA
GAACTACTGGAAAAATGGTCCCCGAAGTCTTATTGCGTGATTGGTCTGGG
AATACTCCCATTGAACCAACTGTAGAAGTAGTCGACTCTGCTCCGAACTC
TAGATCTTCGGCGTCACATGTCTTTCGCACAGAGCGATTCCCCAGGAATG
TGCAGATTAGTAGTGGGACCGATTCTTATAGACCTGGAAACAATTCGAAT
ACTCAAGTGCGTGACCGACTCCAGGAAGCGAAGGATCGTCTACTTCGAGT
TTCATTACACACCACAGATGAAGACCATTCTACTCAAAATCCATCTCATG
TACGGCAGGATGTGCCCGGGAAATTTTCTACCCATGGTTTCCCGCGACGA
AGAATTGGTGATGTGATTCCCGAGAACGAAGGCTCGACTGCTGTGAATCA
AGCTCGTGCGAATGGAAGACTGGGTCATTCGATGGCTTTCGAACGTGGAA
TTCATCATAGAAGTAATGAGCGAAGTCGAACATTCGAGCCGGCTCTTCCC
AAGGCCTTTGCTATGGACCCAGTTCTGCAGGACTTCCAAGTGCCTGTCAC
GCGAAAATCTTTGTCAGAAGCTGGAGGTAGGACGAGGGGGTTGGATCACA
CTACTGCGTTTCTTGACGAAGAATCCTATGCTGGAAACACGCGGAATGTT
AGGAAAGCAGATTTTGGCTTTCAGCCGCCAAACCATGACAGTCGAACGAT
TCAGCTGCCATCAAATCGCAAGCAGACGTCTGATGTGGAACATGGCGCCA
GTGCGGCGAGGGATGAGAGTCAAGCTTTCAGAAATGTAGTGGGTAGACTG
GTGAACAGAATGCAAAGTGCAAAACGCATGCTTTCGACTAGTTGA

Coding sequence (CDS) from alignment at tig00000922_pilon:103340..105184+

>Ggra3218.t2 ID=Ggra3218.t2|Name=Ggra3218.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1845bp|location=Sequence derived from alignment at tig00000922_pilon:103340..105184+ (Gracilaria gracilis GNS1m male)
ATGATTCCAGCAAGCCGGCAAGGTGAAGTGAATGACTACACCCAACGAAC
GGCATGCCGTCACCCCAACGTCTCGGAATATAGAGAGCATGGTAGTGAGC
AGCTTTCTAACGCAACGCTGCCTGGTCTCTCGGATATTCAGACTACCCAT
GTCGAAGAAAGAGAAGTGCCCCATGTTGATAGCCGTGATGTTGTGAATTC
AGGACATATGCTTCCAGATGCTAGTCTTGCAACATCTTCCGATATTGAAG
ACAGTGCGCCTTCAACTGGCAATATCGTCCCCACAGTTGTTGATCCAAAT
GCTGCGGAACCCGTGGCTCTATCGTCCAAGAATTTCCGTCGCCACAGCAA
CCGGATAAGTGCAAGCCTCCGTTATACATACGCCGAAGACGAAACTTTGA
ACTTCTCTGCTCTCAATGAAGAAGACCAGCTTGTCAACGAGCCGAGATCA
AAGCTCTCTATTCCCAAAGTTAGATCTGGAACTTCTTCCCACGCGAACGA
TGGAAACTGTGAAGACGTCGACATTTTTGAGGCTGCAAACCGTGCTGCTG
TTGACATTAACGCGTTGGTGGATCAGTCAAAGGAAAATGACTCAGCAGTG
GGAAGTTTGGATGGACTTGACTTGGAGCCAGTTGTTCTACCGGGAGATGA
TGACTACTCGGTTGCTCCAATGTCACCTATGCAGAACTTTACCCCAGTTG
CAGGTATTTACTATGGAAATTCGTCTCCGTCTGAAGAAACAATGTCCCCT
GAAGAAACTGTGTCAGACAAGATTGGAATCGCAGAATACCCTGAATATGA
AGTTTTGAGGGTTGCGGAAAATGAAAATGAAGACTCTGTGTTTGGTTCTG
AACCAAACACCCCCGTACCAAAAGAAAGTTCAGGATGGCGGGATGCACGA
CCGAAGAGATCTCGTGACCTCAGTGAACAGGTAAGAGATTCTGTTGCAGT
GCAACTAGCGAGTTTATCTTCAATTCACGGTGGTCGCGGTGCAGGTGACA
GAACTACTGGAAAAATGGTCCCCGAAGTCTTATTGCGTGATTGGTCTGGG
AATACTCCCATTGAACCAACTGTAGAAGTAGTCGACTCTGCTCCGAACTC
TAGATCTTCGGCGTCACATGTCTTTCGCACAGAGCGATTCCCCAGGAATG
TGCAGATTAGTAGTGGGACCGATTCTTATAGACCTGGAAACAATTCGAAT
ACTCAAGTGCGTGACCGACTCCAGGAAGCGAAGGATCGTCTACTTCGAGT
TTCATTACACACCACAGATGAAGACCATTCTACTCAAAATCCATCTCATG
TACGGCAGGATGTGCCCGGGAAATTTTCTACCCATGGTTTCCCGCGACGA
AGAATTGGTGATGTGATTCCCGAGAACGAAGGCTCGACTGCTGTGAATCA
AGCTCGTGCGAATGGAAGACTGGGTCATTCGATGGCTTTCGAACGTGGAA
TTCATCATAGAAGTAATGAGCGAAGTCGAACATTCGAGCCGGCTCTTCCC
AAGGCCTTTGCTATGGACCCAGTTCTGCAGGACTTCCAAGTGCCTGTCAC
GCGAAAATCTTTGTCAGAAGCTGGAGGTAGGACGAGGGGGTTGGATCACA
CTACTGCGTTTCTTGACGAAGAATCCTATGCTGGAAACACGCGGAATGTT
AGGAAAGCAGATTTTGGCTTTCAGCCGCCAAACCATGACAGTCGAACGAT
TCAGCTGCCATCAAATCGCAAGCAGACGTCTGATGTGGAACATGGCGCCA
GTGCGGCGAGGGATGAGAGTCAAGCTTTCAGAAATGTAGTGGGTAGACTG
GTGAACAGAATGCAAAGTGCAAAACGCATGCTTTCGACTAGTTGA