Ggra3115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3115.t1
Unique NameGgra3115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:194285..195346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4787.PITG_13599T0
Max annot lvl4776|Peronosporales
Evalue0.000189
EggNOG OGs2CACM@1|root,2R08A@2759|Eukaryota,3QCRE@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3115Ggra3115Gracilaria gracilis GNS1m malegenetig00000120_pilon 194285..195346 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3115.t1.start1Ggra3115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 194285..194287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3115.t1.CDS1Ggra3115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 194285..195346 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3115.t1.exon1Ggra3115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 194285..195346 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3115.t1.stop1Ggra3115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 195344..195346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3115.t1Ggra3115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 194285..195346 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3115.t1 ID=Ggra3115.t1|Name=Ggra3115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MTMSTRALCSAFRVSRRQIHIRRWKLSSTPQGSLRITVPFACNLNISPLD
PHQSEWTQTNVQLHIPTSASLSEGEARNITNKLVIHAREESDDKRSAHIE
ASAVQCDREIEKLLLTHVPELRVEIPGLQNVWIELSHGSIRLRDTIEGDV
RIVSDSADVFVNKLRSTSAKIETKEGNVEARILQGNVNIESQIGTVKLTR
AQGNDIKVQCGGPLEAGSLYGGRLTVRSGGAFSADAVHGDADIEADGAVI
SAVQGSLRLKSNNSASITLADTGTELIDIDAEGDVHLGVSKGLAASFDLD
AGNVHDEVAVLRKESGVGGDGTVCSVRVRATGNVTLRDGRWAERMLGLAS
ARH*
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spliced messenger RNA

>Ggra3115.t1 ID=Ggra3115.t1|Name=Ggra3115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000120_pilon:194285..195346+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATGTCCACCAGAGCGCTCTGTTCCGCGTTCCGGGTTTCACGCCG
TCAGATTCATATTCGACGTTGGAAGCTTTCAAGCACACCGCAAGGATCTT
TGAGAATTACGGTCCCTTTTGCATGCAATTTGAACATATCGCCCTTGGAC
CCTCATCAATCGGAGTGGACACAGACAAACGTGCAGCTCCACATTCCTAC
TTCAGCAAGTCTGAGCGAAGGAGAAGCTAGAAATATTACCAATAAGCTTG
TGATACATGCCAGAGAAGAATCAGATGACAAACGTTCCGCTCATATTGAA
GCTTCTGCTGTGCAATGCGATCGTGAGATTGAGAAACTTTTGCTCACACA
CGTGCCGGAGTTGCGAGTTGAGATTCCAGGGCTGCAAAATGTGTGGATCG
AGTTGTCTCATGGAAGTATACGCTTGCGTGACACCATCGAAGGGGATGTG
CGAATTGTCTCCGACAGTGCCGATGTCTTTGTCAACAAGTTGCGAAGCAC
AAGTGCAAAGATAGAGACAAAAGAGGGAAACGTCGAGGCGCGTATTTTGC
AAGGTAATGTGAACATAGAATCCCAGATTGGGACGGTGAAGCTTACAAGA
GCGCAGGGAAATGACATAAAAGTACAGTGCGGTGGACCGCTCGAGGCAGG
TTCTTTGTACGGTGGGCGCCTGACTGTCCGCAGCGGCGGGGCATTTTCAG
CCGATGCCGTACATGGAGACGCAGATATAGAGGCGGACGGAGCCGTAATA
TCGGCAGTACAAGGAAGTTTAAGACTGAAAAGCAATAATAGTGCAAGTAT
AACATTGGCTGATACGGGCACGGAACTGATCGACATCGACGCTGAGGGCG
ACGTTCATCTGGGAGTAAGCAAGGGTCTTGCTGCAAGTTTTGATTTGGAC
GCCGGCAACGTTCATGATGAGGTAGCAGTGCTACGCAAGGAGTCTGGAGT
TGGTGGCGACGGAACGGTTTGCTCTGTGCGGGTGAGAGCTACTGGTAACG
TTACATTGCGCGATGGGCGGTGGGCTGAAAGAATGCTTGGGCTTGCGTCC
GCCAGACATTGA
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protein sequence of Ggra3115.t1

>Ggra3115.t1 ID=Ggra3115.t1|Name=Ggra3115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MTMSTRALCSAFRVSRRQIHIRRWKLSSTPQGSLRITVPFACNLNISPLD
PHQSEWTQTNVQLHIPTSASLSEGEARNITNKLVIHAREESDDKRSAHIE
ASAVQCDREIEKLLLTHVPELRVEIPGLQNVWIELSHGSIRLRDTIEGDV
RIVSDSADVFVNKLRSTSAKIETKEGNVEARILQGNVNIESQIGTVKLTR
AQGNDIKVQCGGPLEAGSLYGGRLTVRSGGAFSADAVHGDADIEADGAVI
SAVQGSLRLKSNNSASITLADTGTELIDIDAEGDVHLGVSKGLAASFDLD
AGNVHDEVAVLRKESGVGGDGTVCSVRVRATGNVTLRDGRWAERMLGLAS
ARH*
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mRNA from alignment at tig00000120_pilon:194285..195346+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3115.t1 ID=Ggra3115.t1|Name=Ggra3115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000120_pilon:194285..195346+ (Gracilaria gracilis GNS1m male)
ATGACGATGTCCACCAGAGCGCTCTGTTCCGCGTTCCGGGTTTCACGCCG
TCAGATTCATATTCGACGTTGGAAGCTTTCAAGCACACCGCAAGGATCTT
TGAGAATTACGGTCCCTTTTGCATGCAATTTGAACATATCGCCCTTGGAC
CCTCATCAATCGGAGTGGACACAGACAAACGTGCAGCTCCACATTCCTAC
TTCAGCAAGTCTGAGCGAAGGAGAAGCTAGAAATATTACCAATAAGCTTG
TGATACATGCCAGAGAAGAATCAGATGACAAACGTTCCGCTCATATTGAA
GCTTCTGCTGTGCAATGCGATCGTGAGATTGAGAAACTTTTGCTCACACA
CGTGCCGGAGTTGCGAGTTGAGATTCCAGGGCTGCAAAATGTGTGGATCG
AGTTGTCTCATGGAAGTATACGCTTGCGTGACACCATCGAAGGGGATGTG
CGAATTGTCTCCGACAGTGCCGATGTCTTTGTCAACAAGTTGCGAAGCAC
AAGTGCAAAGATAGAGACAAAAGAGGGAAACGTCGAGGCGCGTATTTTGC
AAGGTAATGTGAACATAGAATCCCAGATTGGGACGGTGAAGCTTACAAGA
GCGCAGGGAAATGACATAAAAGTACAGTGCGGTGGACCGCTCGAGGCAGG
TTCTTTGTACGGTGGGCGCCTGACTGTCCGCAGCGGCGGGGCATTTTCAG
CCGATGCCGTACATGGAGACGCAGATATAGAGGCGGACGGAGCCGTAATA
TCGGCAGTACAAGGAAGTTTAAGACTGAAAAGCAATAATAGTGCAAGTAT
AACATTGGCTGATACGGGCACGGAACTGATCGACATCGACGCTGAGGGCG
ACGTTCATCTGGGAGTAAGCAAGGGTCTTGCTGCAAGTTTTGATTTGGAC
GCCGGCAACGTTCATGATGAGGTAGCAGTGCTACGCAAGGAGTCTGGAGT
TGGTGGCGACGGAACGGTTTGCTCTGTGCGGGTGAGAGCTACTGGTAACG
TTACATTGCGCGATGGGCGGTGGGCTGAAAGAATGCTTGGGCTTGCGTCC
GCCAGACATTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:194285..195346+

>Ggra3115.t1 ID=Ggra3115.t1|Name=Ggra3115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000120_pilon:194285..195346+ (Gracilaria gracilis GNS1m male)
ATGACGATGTCCACCAGAGCGCTCTGTTCCGCGTTCCGGGTTTCACGCCG
TCAGATTCATATTCGACGTTGGAAGCTTTCAAGCACACCGCAAGGATCTT
TGAGAATTACGGTCCCTTTTGCATGCAATTTGAACATATCGCCCTTGGAC
CCTCATCAATCGGAGTGGACACAGACAAACGTGCAGCTCCACATTCCTAC
TTCAGCAAGTCTGAGCGAAGGAGAAGCTAGAAATATTACCAATAAGCTTG
TGATACATGCCAGAGAAGAATCAGATGACAAACGTTCCGCTCATATTGAA
GCTTCTGCTGTGCAATGCGATCGTGAGATTGAGAAACTTTTGCTCACACA
CGTGCCGGAGTTGCGAGTTGAGATTCCAGGGCTGCAAAATGTGTGGATCG
AGTTGTCTCATGGAAGTATACGCTTGCGTGACACCATCGAAGGGGATGTG
CGAATTGTCTCCGACAGTGCCGATGTCTTTGTCAACAAGTTGCGAAGCAC
AAGTGCAAAGATAGAGACAAAAGAGGGAAACGTCGAGGCGCGTATTTTGC
AAGGTAATGTGAACATAGAATCCCAGATTGGGACGGTGAAGCTTACAAGA
GCGCAGGGAAATGACATAAAAGTACAGTGCGGTGGACCGCTCGAGGCAGG
TTCTTTGTACGGTGGGCGCCTGACTGTCCGCAGCGGCGGGGCATTTTCAG
CCGATGCCGTACATGGAGACGCAGATATAGAGGCGGACGGAGCCGTAATA
TCGGCAGTACAAGGAAGTTTAAGACTGAAAAGCAATAATAGTGCAAGTAT
AACATTGGCTGATACGGGCACGGAACTGATCGACATCGACGCTGAGGGCG
ACGTTCATCTGGGAGTAAGCAAGGGTCTTGCTGCAAGTTTTGATTTGGAC
GCCGGCAACGTTCATGATGAGGTAGCAGTGCTACGCAAGGAGTCTGGAGT
TGGTGGCGACGGAACGGTTTGCTCTGTGCGGGTGAGAGCTACTGGTAACG
TTACATTGCGCGATGGGCGGTGGGCTGAAAGAATGCTTGGGCTTGCGTCC
GCCAGACATTGA
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